Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011925

Physical Location & Seq

Genomic Coordinates Reverse (-)

23957872 .. 23959517

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTTCCGATTGCTTTTGTCTCTGCATTCACAACTCTGGACAATCTGAAGAAACTTCTTCCGTTTCTGAAGCCAATTTTGAAGCAAGAGGCGATTAGGACAGTGCTAGGGGCTTATCTACCCCAAATTGTACTTATACTCTTTCTAGCTTTCTTGCCAAAGTTCCTTCTGTTTTTGTCTAAGGCTGAGGGAATCCCTTCCCAGAGCCATGCAGTAAGGGCTTTTTCCGGGAAATACTTCTACTTTACGGTAGGTGGAACCTTATTCAGTACATTCAAGAGCATCAAGAAGGATCCTAACTCTCTTGTTGACTTACTCGCAACTAGCCTCCCCGACAATGCAACTTACTTCCTCACCTTTGTGGCCCTGGAGTACGTAACAATTTACGTCTTCTACTTGCATCCTAGGGATCTTGGATATGGGACTAGAGTACCCGGTGATACGCTCATCATTACAATTGTCCTCTGCTACTCTGTTATTGCTCCGCTGATTCTTCCAATTGGTGTGCTCTACTTTGGCCTTGGATGGCCTGTCCTTCGAAATCAGGTATCCTCAGCCTTTTTCGAGCTCGCAAGTTTTACCAAAGGGATACACAACTTAACCTACTTTTTTGTTCTAAGCAAGCATATGATGTGGCTGCACATCCAAATTCAACTCATCGCATCTCTGATACTGTACCAAGTTACCATGTTTGGTTACTTTGGGGTGAAGAAATTCTACTATGCACCATTCTTAATTCCACTTCCTATCATGTCCTTTGTCTTTAGTTTCGTCTGCAGCAAGAAACTCTACCGGTTTTTCCAACACACTGCGCTTGAAGTTGCTGCACACGAGCTCAAGGAAATTCCTTTTACAGAGCTTTCATCCCACCGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0030054 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

293

Amino Acids

33.2

Weight (kDa)

9.47

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_7TM	PF02714	1 - 131	1.8e-25	Calcium-dependent channel, 7TM region, putative phosphate
RSN1_7TM	PF02714	134 - 234	1.8e-13	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30360
fragaria_vesca	FvH4_3g04980 FvH4_3g04980
malus_domestica	MD05G1278500.v1.1 MD10G1257300.v1.1
prunus_persica	Prupe.4G086300_v2.0.a1
pyrus_communis	pycom05g25910 pycom10g21280 pycom10g21310 pycom10g21330
rosa_chinensis	RchiOBHm_Chr5g0015001
rosa_laevigata	RLG00000032159
rosa_multiflora	Rmu_sc0004889.1_g000022
rosa_roxburghii	Rroxscaffold_1G00061540
rosa_rugosa	Rorug05G0022600 Rorug05G0022700
rosa_samantha	Rh5AG117900 Rh5BG115100
rosa_wichuraiana	Rw5G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	287, 300, 417
AcsI	RAATTY	3 cut(s)	648, 713, 843
AcuI	CTGAAG	2 cut(s)	68, 89
AfaI	GTAC	5 cut(s)	132, 271, 374, 432, 677
AgeI	ACCGGT	1 cut(s)	792
AgsI	TTSAA	4 cut(s)	82, 277, 653, 818
AjnI	CCWGG	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	149, 568, 835, 859
AluI	AGCT	4 cut(s)	149, 568, 835, 859
Alw21I	GWGCWC	3 cut(s)	510, 570, 837
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	287, 300, 417
AoxI	GGCC	3 cut(s)	363, 517, 527
ApeKI	GCWGC	3 cut(s)	637, 777, 824
ApoI	RAATTY	3 cut(s)	648, 713, 843
AsiGI	ACCGGT	1 cut(s)	792
Asp700I	GAANNNNTTC	3 cut(s)	196, 236, 713
AspA2I	CCTAGG	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	364
AsuC2I	CCSGG	2 cut(s)	229, 435
AsuHPI	GGTGA	3 cut(s)	346, 449, 718
AsuII	TTCGAA	1 cut(s)	538
AvrII	CCTAGG	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	570, 837
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	3 cut(s)	510, 570, 837
BbvCI	CCTCAGC	2 cut(s)	186, 553
BbvI	GCAGC	3 cut(s)	624, 789, 811
BccI	CCATC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	2 cut(s)	559, 582
BcnI	CCSGG	2 cut(s)	229, 435
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	5 cut(s)	107, 146, 324, 405, 426
BfmI	CTRYAG	1 cut(s)	775
BfuI	GTATCC	2 cut(s)	559, 582
BisI	GCNGC	3 cut(s)	638, 778, 825
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	3 cut(s)	639, 779, 826
Bme1390I	CCNGG	3 cut(s)	229, 368, 435
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	3 cut(s)	6, 259, 294
BmrFI	CCNGG	3 cut(s)	229, 368, 435
BmsI	GCATC	3 cut(s)	291, 409, 671
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	186, 553
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	229, 435
BsaAI	YACGTR	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	366, 404, 520
BsaWI	WCCGGW	1 cut(s)	792
Bse118I	RCCGGY	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	366, 404, 520
BseGI	GGATG	4 cut(s)	400, 530, 642, 863
BseMII	CTCAG	2 cut(s)	177, 567
BseXI	GCAGC	3 cut(s)	624, 789, 811
BsgI	GTGCAG	2 cut(s)	623, 810
BshFI	GGCC	3 cut(s)	365, 519, 529
BshTI	ACCGGT	1 cut(s)	792
BsiHKAI	GWGCWC	3 cut(s)	510, 570, 837
BsiSI	CCGG	3 cut(s)	228, 435, 793
BslFI	GGGAC	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	365, 519, 529
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	510, 570, 837
Bsp143I	GATC	2 cut(s)	292, 409
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	3 cut(s)	365, 519, 529
BspCNI	CTCAG	2 cut(s)	178, 566
BspLI	GGNNCC	3 cut(s)	6, 259, 294
BspMAI	CTGCAG	1 cut(s)	779
BspPI	GGATC	3 cut(s)	287, 300, 417
BspT104I	TTCGAA	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	792
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	3 cut(s)	366, 404, 520
BssMI	GATC	2 cut(s)	292, 409
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	2 cut(s)	404, 520
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	103, 250, 675
BstBAI	YACGTR	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	570, 623
BstDEI	CTNAG	4 cut(s)	180, 186, 553, 617
BstF5I	GGATG	4 cut(s)	400, 530, 642, 863
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	2 cut(s)	295, 412
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	292, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	227, 366, 433
BstSFI	CTRYAG	1 cut(s)	775
BstSNI	TACGTA	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	624, 789, 811
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	2 cut(s)	292, 409
BstYI	RGATCY	2 cut(s)	292, 409
BsuI	GTATCC	2 cut(s)	559, 582
BsuRI	GGCC	3 cut(s)	365, 519, 529
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	4 cut(s)	400, 530, 642, 863
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	108, 807
Cac8I	GCNNGC	2 cut(s)	570, 623
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	5 cut(s)	131, 270, 373, 431, 676
CspAI	ACCGGT	1 cut(s)	792
CviAII	CATG	3 cut(s)	209, 688, 751
CviQI	GTAC	5 cut(s)	131, 270, 373, 431, 676
DdeI	CTNAG	4 cut(s)	180, 186, 553, 617
DpnI	GATC	2 cut(s)	294, 411
DpnII	GATC	2 cut(s)	292, 409
Ecl136II	GAGCTC	2 cut(s)	568, 835
Eco105I	TACGTA	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	404, 520
Eco24I	GRGCYC	2 cut(s)	570, 837
Eco53kI	GAGCTC	2 cut(s)	568, 835
Eco57I	CTGAAG	2 cut(s)	68, 89
EcoICRI	GAGCTC	2 cut(s)	568, 835
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	404, 520
EcoT38I	GRGCYC	2 cut(s)	570, 837
ErhI	CCWWGG	2 cut(s)	404, 520
FaeI	CATG	3 cut(s)	212, 691, 754
FaiI	YATR	8 cut(s)	137, 210, 420, 627, 629, 689, 723, 752
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	208, 687, 750
FauNDI	CATATG	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	638, 778, 825
FokI	GGATG	4 cut(s)	387, 537, 629, 850
FriOI	GRGCYC	2 cut(s)	570, 837
Fsp4HI	GCNGC	3 cut(s)	638, 778, 825
FspBI	CTAG	5 cut(s)	107, 146, 324, 405, 426
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	3 cut(s)	638, 778, 825
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	365, 519, 529
HapII	CCGG	3 cut(s)	228, 435, 793
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	3 cut(s)	212, 691, 754
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	192, 490
HpaII	CCGG	3 cut(s)	228, 435, 793
HphI	GGTGA	3 cut(s)	346, 449, 718
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	9, 48, 69, 669
Hpy188III	TCNNGA	3 cut(s)	38, 277, 286
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	4 cut(s)	176, 207, 283, 545
HpyCH4III	ACNGT	3 cut(s)	103, 250, 675
HpyCH4IV	ACGT	2 cut(s)	375, 387
HpyCH4V	TGCA	8 cut(s)	26, 212, 341, 400, 640, 725, 777, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	180, 186, 553, 617
HpySE526I	ACGT	2 cut(s)	375, 387
Hsp92II	CATG	3 cut(s)	212, 691, 754
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	2 cut(s)	292, 409
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	23, 215, 241, 353, 380, 448, 530, 543, 806
Lsp1109I	GCAGC	3 cut(s)	624, 789, 811
LweI	GCATC	3 cut(s)	291, 409, 671
MaeI	CTAG	5 cut(s)	107, 146, 324, 405, 426
MaeII	ACGT	2 cut(s)	375, 387
MaeIII	GTNAC	3 cut(s)	376, 682, 695
MalI	GATC	2 cut(s)	294, 411
MboI	GATC	2 cut(s)	292, 409
MboII	GAAGA	5 cut(s)	50, 61, 382, 485, 721
MfeI	CAATTG	2 cut(s)	456, 498
MflI	RGATCY	2 cut(s)	292, 409
MhlI	GDGCHC	3 cut(s)	510, 570, 837
MluCI	AATT	9 cut(s)	75, 126, 381, 456, 498, 648, 713, 735, 843
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	6 cut(s)	82, 181, 338, 362, 473, 562
MroXI	GAANNNNTTC	3 cut(s)	196, 236, 713
MseI	TTAA	2 cut(s)	599, 734
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	3 cut(s)	228, 435, 793
MspR9I	CCNGG	3 cut(s)	229, 368, 435
MunI	CAATTG	2 cut(s)	456, 498
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	229, 435
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	2 cut(s)	292, 409
NlaIII	CATG	3 cut(s)	212, 691, 754
NlaIV	GGNNCC	3 cut(s)	6, 259, 294
NspV	TTCGAA	1 cut(s)	538
OliI	CACNNNNGTG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	3 cut(s)	196, 236, 713
PfeI	GAWTC	2 cut(s)	192, 490
PfoI	TCCNGGA	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	792
PkrI	GCNGC	3 cut(s)	639, 779, 826
Ppu21I	YACGTR	1 cut(s)	376
Psp124BI	GAGCTC	2 cut(s)	570, 837
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	6, 259, 294
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	292, 409
RsaI	GTAC	5 cut(s)	132, 271, 374, 432, 677
RsaNI	GTAC	5 cut(s)	131, 270, 373, 431, 676
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	2 cut(s)	570, 837
SaqAI	TTAA	2 cut(s)	599, 734
SatI	GCNGC	3 cut(s)	638, 778, 825
Sau3AI	GATC	2 cut(s)	292, 409
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	3 cut(s)	229, 368, 435
SduI	GDGCHC	3 cut(s)	510, 570, 837
SfaNI	GCATC	3 cut(s)	291, 409, 671
SfcI	CTRYAG	1 cut(s)	775
SfuI	TTCGAA	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SnaBI	TACGTA	1 cut(s)	376
Sse9I	AATT	9 cut(s)	75, 126, 381, 456, 498, 648, 713, 735, 843
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	5 cut(s)	107, 146, 324, 405, 426
SstI	GAGCTC	2 cut(s)	570, 837
StyD4I	CCNGG	3 cut(s)	227, 366, 433
StyI	CCWWGG	2 cut(s)	404, 520
TaaI	ACNGT	3 cut(s)	103, 250, 675
TaiI	ACGT	2 cut(s)	378, 390
TaqI	TCGA	2 cut(s)	538, 564
TasI	AATT	9 cut(s)	75, 126, 381, 456, 498, 648, 713, 735, 843
TatI	WGTACW	2 cut(s)	130, 269
TfiI	GAWTC	2 cut(s)	192, 490
Tru1I	TTAA	2 cut(s)	599, 734
Tru9I	TTAA	2 cut(s)	599, 734
TscAI	CASTG	2 cut(s)	108, 814
TseI	GCWGC	3 cut(s)	637, 777, 824
TspDTI	ATGAA	1 cut(s)	852
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	108, 814
XapI	RAATTY	3 cut(s)	648, 713, 843
XmaJI	CCTAGG	1 cut(s)	404
XmnI	GAANNNNTTC	3 cut(s)	196, 236, 713
XspI	CTAG	5 cut(s)	107, 146, 324, 405, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.