Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011925

Physical Location & Seq

Genomic Coordinates Reverse (-)

1441840 .. 1445069

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTGGAATTTAGGCTTTACAACTCGATGACACACCAGAAGGAGGTCTTCAAGCCCAATGTTCCCGGCGAGGTGGGTATGTACGTTTGCGGCGTCACACCCTACGCTGAGAGCCACATCGGTCATGCCCGCGCCGCCGTCAATTTTGATGTGCTCTTCAGATACTTAATGGAGTTGGGTTATAAGGTCACGTACGTGCGGAACTTCACCGATGTTGATGACAAGATAATTGATGGAGCAAATAAGAGTGGGGAAGATCCAATGACATTAAGTAATCGTTTTTGCGAAAAATATAAAAATGACATGAAAGATCTCCAATGCCTCGATCCAACCTATCAGCCGCGTGTTTCTGATCACATGGATCAGATAATAGATATGATAACACAGATCGTCGACAATGAATATGCCTACGTAGTTGATGGGGATGTATTCTTTGCTGTTGAGAAATTCCCAAATTATGGGCAATTATCTAGACAAAATTTGGAACATATTAGGGCGGGTGAACGAGTTGATGTTGATTTAAGAAAGCGCAATCCTGCAGATTTTGCATTGTGGAAGTCTGCAAAGCCTGGAGAGCCAGAATGGAAAAGCCCTTGGGGACCAGGAAGGCCGGGGTGGCACATTGAATGCAGTGCCATGAGTGCTCGTTATCTTACATACAAGTTTGATATTCATGGTGGTGGTATTGACTTGATTTTTCCGCATCATGAAAACGAGATCTCTCAAAGTGGTGCTGCATGCCAGGAGGCTTGTGTCAGTTATTGGTTGCACAACGGTCATGTTACTAAGGATAATGAGAAAATGTCAAAATCATTGGGGAACTTTTCCACAATTCGTCAGATTACTGAAATATATCACCCACTGTCTTTGAGACACTTCTTGTTAAGTGCGCACTATAGATCTCCACTCAATTACAGTGAATCCCAGCTGGATAGTGCATCAGCTGCTGTCTATTACATATATCAGACTTTGCAAGAGTGTGAAGATGCTTTATCTCCATTTCAAGAAGAGGTCCAGAAGGAAGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0030054 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

343

Amino Acids

39.35

Weight (kDa)

5.45

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	17 - 313	5.9e-128	tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g	PF09334	34 - 145	2.2e-06	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30360
fragaria_vesca	FvH4_3g04980 FvH4_3g04980
malus_domestica	MD05G1278500.v1.1 MD10G1257300.v1.1
prunus_persica	Prupe.4G086300_v2.0.a1
pyrus_communis	pycom05g25910 pycom10g21280 pycom10g21310 pycom10g21330
rosa_chinensis	RchiOBHm_Chr5g0015001
rosa_laevigata	RLG00000032159
rosa_multiflora	Rmu_sc0004889.1_g000022
rosa_roxburghii	Rroxscaffold_1G00061540
rosa_rugosa	Rorug05G0022600 Rorug05G0022700
rosa_samantha	Rh5AG117900 Rh5BG115100
rosa_wichuraiana	Rw5G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
Acc16I	TGCGCA	1 cut(s)	891
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	132, 343
AciI	CCGC	7 cut(s)	90, 130, 135, 199, 341, 497, 701
AclWI	GGATC	3 cut(s)	251, 320, 369
AcsI	RAATTY	3 cut(s)	8, 446, 478
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	83, 194
AfiI	CCNNNNNNNGG	2 cut(s)	43, 458
AgsI	TTSAA	3 cut(s)	52, 626, 1004
AjnI	CCWGG	3 cut(s)	568, 601, 741
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	928, 944
AluI	AGCT	2 cut(s)	928, 944
Alw21I	GWGCWC	2 cut(s)	156, 646
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	3 cut(s)	251, 320, 369
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	734, 944
ApoI	RAATTY	3 cut(s)	8, 446, 478
AspLEI	GCGC	3 cut(s)	134, 531, 892
AspS9I	GGNCC	2 cut(s)	599, 1012
AsuC2I	CCSGG	2 cut(s)	66, 612
AsuHPI	GGTGA	3 cut(s)	199, 512, 848
AvaII	GGWCC	2 cut(s)	599, 1012
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	156, 646
BbvI	GCAGC	2 cut(s)	721, 931
BccI	CCATC	2 cut(s)	227, 413
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	3 cut(s)	570, 603, 743
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	66, 612
BcoDI	GTCTC	1 cut(s)	865
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	537, 895
BglI	GCCNNNNNGGC	1 cut(s)	616
BglII	AGATCT	3 cut(s)	310, 717, 899
BisI	GCNGC	5 cut(s)	91, 135, 341, 735, 945
BlsI	GCNGC	5 cut(s)	92, 136, 342, 736, 946
Bme1390I	CCNGG	5 cut(s)	66, 570, 603, 612, 743
Bme18I	GGWCC	2 cut(s)	599, 1012
BmgT120I	GGNCC	2 cut(s)	599, 1012
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	5 cut(s)	66, 570, 603, 612, 743
BmsI	GCATC	3 cut(s)	712, 947, 976
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	66, 612
BsaAI	YACGTR	3 cut(s)	192, 196, 412
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	593, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 458
BseBI	CCWGG	3 cut(s)	570, 603, 743
BseDI	CCNNGG	2 cut(s)	593, 611
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	43, 458
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	721, 931
BseYI	CCCAGC	1 cut(s)	924
Bsh1236I	CGCG	2 cut(s)	132, 343
BshFI	GGCC	1 cut(s)	610
BsiHKAI	GWGCWC	2 cut(s)	156, 646
BsiSI	CCGG	2 cut(s)	66, 611
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	43, 458
BsmAI	GTCTC	1 cut(s)	865
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	156, 646
Bsp143I	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
BspACI	CCGC	7 cut(s)	90, 130, 135, 199, 341, 497, 701
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	132, 343
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	3 cut(s)	251, 320, 369
BspQI	GCTCTTC	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	593, 611
BssMI	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	3 cut(s)	570, 603, 743
Bst4CI	ACNGT	3 cut(s)	776, 864, 917
Bst6I	CTCTTC	2 cut(s)	161, 1002
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	2 cut(s)	545, 944
BstBAI	YACGTR	3 cut(s)	192, 196, 412
BstC8I	GCNNGC	2 cut(s)	130, 739
BstDEI	CTNAG	2 cut(s)	108, 786
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	132, 343
BstHHI	GCGC	3 cut(s)	134, 531, 892
BstKTI	GATC	8 cut(s)	259, 313, 328, 355, 364, 390, 720, 902
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 545, 574, 616, 641, 944
BstNI	CCWGG	3 cut(s)	570, 603, 743
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	5 cut(s)	64, 568, 601, 610, 741
BstSFI	CTRYAG	2 cut(s)	537, 895
BstSNI	TACGTA	1 cut(s)	412
BstUI	CGCG	2 cut(s)	132, 343
BstV1I	GCAGC	2 cut(s)	721, 931
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	4 cut(s)	256, 310, 717, 899
BstYI	RGATCY	4 cut(s)	256, 310, 717, 899
BsuRI	GGCC	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	3 cut(s)	637, 860, 922
Cac8I	GCNNGC	2 cut(s)	130, 739
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	3 cut(s)	134, 531, 892
Cfr13I	GGNCC	2 cut(s)	599, 1012
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	82, 193
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	8 cut(s)	125, 304, 358, 637, 674, 707, 738, 779
CviQI	GTAC	2 cut(s)	82, 193
DdeI	CTNAG	2 cut(s)	108, 786
DpnI	GATC	8 cut(s)	258, 312, 327, 354, 363, 389, 719, 901
DpnII	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
Eam1104I	CTCTTC	2 cut(s)	161, 1002
EarI	CTCTTC	2 cut(s)	161, 1002
Eco105I	TACGTA	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	593
Eco47I	GGWCC	2 cut(s)	599, 1012
Eco57I	CTGAAG	1 cut(s)	142
EcoRII	CCWGG	3 cut(s)	568, 601, 741
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	8 cut(s)	128, 307, 361, 640, 677, 710, 741, 782
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	8 cut(s)	124, 303, 357, 636, 673, 706, 737, 778
FauI	CCCGC	2 cut(s)	137, 490
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	91, 135, 341, 735, 945
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	5 cut(s)	91, 135, 341, 735, 945
FspAI	RTGCGCAY	1 cut(s)	891
FspBI	CTAG	1 cut(s)	471
FspI	TGCGCA	1 cut(s)	891
GlaI	GCGC	3 cut(s)	133, 530, 891
GluI	GCNGC	5 cut(s)	91, 135, 341, 735, 945
GsaI	CCCAGC	1 cut(s)	928
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	66, 611
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	3 cut(s)	134, 531, 892
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	8 cut(s)	128, 307, 361, 640, 677, 710, 741, 782
Hin6I	GCGC	3 cut(s)	132, 529, 890
HinP1I	GCGC	3 cut(s)	132, 529, 890
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	1 cut(s)	920
HpaII	CCGG	2 cut(s)	66, 611
HphI	GGTGA	3 cut(s)	199, 512, 848
Hpy166II	GTNNAC	2 cut(s)	394, 503
Hpy188I	TCNGA	5 cut(s)	161, 352, 366, 840, 966
Hpy188III	TCNNGA	4 cut(s)	471, 707, 1004, 1015
Hpy8I	GTNNAC	2 cut(s)	394, 503
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	4 cut(s)	34, 600, 1012, 1016
HpyCH4III	ACNGT	3 cut(s)	776, 864, 917
HpyCH4IV	ACGT	4 cut(s)	84, 191, 195, 411
HpyCH4V	TGCA	8 cut(s)	539, 548, 563, 630, 737, 769, 938, 973
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 545, 574, 616, 641, 944
HpyF3I	CTNAG	2 cut(s)	108, 786
HpySE526I	ACGT	4 cut(s)	84, 191, 195, 411
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	8 cut(s)	128, 307, 361, 640, 677, 710, 741, 782
HspAI	GCGC	3 cut(s)	132, 529, 890
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	721, 931
LweI	GCATC	3 cut(s)	712, 947, 976
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	4 cut(s)	84, 191, 195, 411
MaeIII	GTNAC	3 cut(s)	94, 187, 781
MalI	GATC	8 cut(s)	258, 312, 327, 354, 363, 389, 719, 901
MboI	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
MboII	GAAGA	5 cut(s)	40, 148, 266, 995, 1019
MflI	RGATCY	4 cut(s)	256, 310, 717, 899
MhlI	GDGCHC	2 cut(s)	156, 646
MluCI	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 478, 831, 910
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	37, 64, 332, 739, 1003
MseI	TTAA	4 cut(s)	167, 269, 521, 884
MslI	CAYNNNNRTG	2 cut(s)	194, 678
MspA1I	CMGCKG	2 cut(s)	928, 944
MspI	CCGG	2 cut(s)	66, 611
MspR9I	CCNGG	5 cut(s)	66, 570, 603, 612, 743
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	3 cut(s)	570, 603, 743
MvnI	CGCG	2 cut(s)	132, 343
MwoI	GCNNNNNNNGC	6 cut(s)	134, 545, 574, 616, 641, 944
NciI	CCSGG	2 cut(s)	66, 612
NdeII	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
NlaIII	CATG	8 cut(s)	128, 307, 361, 640, 677, 710, 741, 782
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	94, 187
NsbI	TGCGCA	1 cut(s)	891
NspI	RCATGY	1 cut(s)	741
OliI	CACNNNNGTG	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	741
PagI	TCATGA	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	920
Pfl23II	CGTACG	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	92, 136, 342, 736, 946
Ppu21I	YACGTR	3 cut(s)	192, 196, 412
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	568, 601, 741
PspFI	CCCAGC	1 cut(s)	924
PspGI	CCWGG	3 cut(s)	568, 601, 741
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	599, 1012
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	4 cut(s)	256, 310, 717, 899
PvuII	CAGCTG	2 cut(s)	928, 944
RsaI	GTAC	2 cut(s)	83, 194
RsaNI	GTAC	2 cut(s)	82, 193
RseI	CAYNNNNRTG	2 cut(s)	194, 678
SalI	GTCGAC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	167, 269, 521, 884
SatI	GCNGC	5 cut(s)	91, 135, 341, 735, 945
Sau3AI	GATC	8 cut(s)	256, 310, 325, 352, 361, 387, 717, 899
Sau96I	GGNCC	2 cut(s)	599, 1012
ScrFI	CCNGG	5 cut(s)	66, 570, 603, 612, 743
SduI	GDGCHC	2 cut(s)	156, 646
SfaNI	GCATC	3 cut(s)	712, 947, 976
SfcI	CTRYAG	2 cut(s)	537, 895
SinI	GGWCC	2 cut(s)	599, 1012
SmiMI	CAYNNNNRTG	2 cut(s)	194, 678
SnaBI	TACGTA	1 cut(s)	412
SphI	GCATGC	1 cut(s)	741
Sse9I	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 478, 831, 910
SsiI	CCGC	7 cut(s)	90, 130, 135, 199, 341, 497, 701
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	5 cut(s)	64, 568, 601, 610, 741
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	3 cut(s)	776, 864, 917
TaiI	ACGT	4 cut(s)	87, 194, 198, 414
TaqI	TCGA	3 cut(s)	26, 324, 393
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 478, 831, 910
TauI	GCSGC	3 cut(s)	93, 137, 343
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	4 cut(s)	167, 269, 521, 884
Tru9I	TTAA	4 cut(s)	167, 269, 521, 884
TscAI	CASTG	3 cut(s)	637, 867, 922
TseFI	GTSAC	2 cut(s)	94, 187
TseI	GCWGC	2 cut(s)	734, 944
Tsp45I	GTSAC	2 cut(s)	94, 187
TspDTI	ATGAA	4 cut(s)	320, 414, 662, 723
TspRI	CASTG	3 cut(s)	637, 867, 922
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	599, 1012
XapI	RAATTY	3 cut(s)	8, 446, 478
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.