Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006648

Physical Location & Seq

Genomic Coordinates Forward (+)

24085352 .. 24086497

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATGAAGGTAGGCCTAATGTGGATGAGTACTCGGATCATCAGCAGCGAGATGAACTACTTCTTGAATTGACTCAATCTCCAGAGGATGAAGAGGAAAGGACATGGATAACTGAAGACGAAAGGAAACCGTCAGAGAAAGATTTGGAATTGGAGCTCTTGGATGAAGACATAAGGTTATGGTCATCTGGTAAGGAATCCAACATTCGTATGCTGCTTTCGACGCTACACCATATTGTATGGCCCAACAGTGGATGGTATGCAATTCCATTGACAAGCCTAATAGAAAGTTCACAGGTGAAGAAAGCCTATCAGAAAGCAAGGCTGTGCCTCCACCCAGACAAACTGCAACAAAGAGGAGCAACATCTGCTCAAAAATATATTGCTGAAAAGGCCTTCACCATCCTCCAGGATGCATGGGCTGTGTTCATCTCCAAAGATGTATTCATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.63

Weight (kDa)

4.79

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30280 AT1G30280 AT1G30280
fragaria_vesca	FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 FvH4_3g05060
malus_domestica	MD05G1279900.v1.1 MD10G1258400.v1.1
prunus_persica	Prupe.4G085400_v2.0.a1 Prupe.4G085400_v2.0.a1
pyrus_communis	pycom05g26010 pycom10g21470 pycom10g21480
rosa_chinensis	RchiOBHm_Chr5g0014901
rosa_laevigata	RLG00000032149
rosa_multiflora	Rmu_sc0013610.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061670
rosa_rugosa	Rorug05G0021100.1 Rorug05G0021200
rosa_samantha	Rh5AG117000 Rh5BG113400 Rh5BG114000 Rh5CG125500 Rh5DG113400
rosa_wichuraiana	Rw5G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	1 cut(s)	428
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	14, 242, 393
ApeKI	GCWGC	2 cut(s)	46, 214
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	310, 391
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	123, 174
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	58, 201
BccI	CCATC	2 cut(s)	249, 410
BciT130I	CCWGG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	47, 215
BlsI	GCNGC	2 cut(s)	48, 216
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	2 cut(s)	123, 174
BpmI	CTGGAG	2 cut(s)	66, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	410
BseGI	GGATG	7 cut(s)	10, 31, 94, 169, 260, 402, 418
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	58, 201
BshFI	GGCC	3 cut(s)	16, 244, 395
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	3 cut(s)	16, 244, 395
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	3 cut(s)	16, 244, 395
BspPI	GGATC	1 cut(s)	45
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	132, 251
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstF5I	GGATG	7 cut(s)	10, 31, 94, 169, 260, 402, 418
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 368, 392
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	58, 201
BstV2I	GAAGAC	2 cut(s)	123, 174
BsuRI	GGCC	3 cut(s)	16, 244, 395
BtsCI	GGATG	7 cut(s)	10, 31, 94, 169, 260, 402, 418
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	105, 417
CviJI	RGCY	8 cut(s)	16, 157, 244, 279, 308, 325, 395, 422
CviKI_1	RGCY	8 cut(s)	16, 157, 244, 279, 308, 325, 395, 422
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	157
Eco147I	AGGCCT	2 cut(s)	16, 395
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	108, 420
FaiI	YATR	9 cut(s)	106, 173, 181, 212, 234, 241, 261, 381, 418
FatI	CATG	2 cut(s)	104, 416
Fnu4HI	GCNGC	2 cut(s)	47, 215
FokI	GGATG	7 cut(s)	17, 38, 101, 176, 267, 389, 425
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	47, 215
GluI	GCNGC	2 cut(s)	47, 215
GsuI	CTGGAG	2 cut(s)	66, 392
HaeIII	GGCC	3 cut(s)	16, 244, 395
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	108, 420
HinfI	GANTC	2 cut(s)	73, 197
HphI	GGTGA	2 cut(s)	310, 391
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	37, 136, 315
Hpy188III	TCNNGA	2 cut(s)	65, 83
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	132, 251
HpyCH4V	TGCA	3 cut(s)	263, 349, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 368, 392
Hsp92II	CATG	2 cut(s)	108, 420
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	154, 359
LpnPI	CCDG	6 cut(s)	96, 174, 281, 351, 395, 422
Lsp1109I	GCAGC	2 cut(s)	58, 201
LweI	GCATC	1 cut(s)	403
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	4 cut(s)	104, 128, 179, 313
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	68, 149, 264
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	79, 88, 341, 350, 416
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	223, 368, 392
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	108, 420
NsiI	ATGCAT	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	16, 395
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	48, 216
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	2 cut(s)	47, 215
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	13, 159, 179, 300
SfaNI	GCATC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	68, 149, 264
SseBI	AGGCCT	2 cut(s)	16, 395
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	2 cut(s)	16, 395
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	132, 251
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	68, 149, 264
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	46, 214
TspDTI	ATGAA	6 cut(s)	21, 69, 105, 180, 418, 436
TspRI	CASTG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.