Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Forward (+)

24113247 .. 24116088

Gene Structure 2842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTAGCTATTTCAAGGATGAAGGCCTTCATTTCATCCGCCCCTCACGTTTCCAAGACCACACCTTTCGCCCTTTTATCTTCCGCCTCCTCCTCCAAGTCCTTCTCCTTCAGCCCTCCTACCCTTTTCCAAAAACCCAATATTTTTCTCCCCAAAAGATCCATTTTTTCACCTCAGAACGTCCGATGTCTGCAAATGGAGGCGGAATCTCACCAGCGCTCCGGTGAGATTCACGTCATCGTCGGCCCCATGTTCGCCGGCAAGACCACCACGCTTCTTCGCAAAGTTCAGTGCGAGAGAGGCAACGGCAGAAATGTTGCTATAATCAAATCGATCAAGGATACAAGATATGGATTGGATTCAATAGTGACACATGACGGGGTCAAGTTGCCATGCTGGCCTTTAAAAGATTTATCATCGTTCAAACAAAAGTTTACCCCTGAGGCATATGATAAGCTAGATGTGATTGGTATCGATGAAGCTCAATTCTTTGAAGACCTGTATGATTTCTGCTCTGAAGCTGCTCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

9.23

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	75 - 175	3.4e-24	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	39, 84, 203
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	94
AfeI	AGCGCT	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	15, 363, 424, 494
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	4 cut(s)	8, 457, 482, 521
AluI	AGCT	4 cut(s)	8, 457, 482, 521
AlwI	GGATC	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	218
AoxI	GGCC	3 cut(s)	24, 244, 398
ApeKI	GCWGC	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	162, 203, 236
AxyI	CCTNAGG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	508
BceAI	ACGGC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	501
Bsa29I	ATCGAT	2 cut(s)	332, 474
BsaBI	GATNNNNATC	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse118I	RCCGGY	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	470
BseCI	ATCGAT	2 cut(s)	332, 474
BseGI	GGATG	2 cut(s)	24, 35
BseJI	GATNNNNATC	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	188, 432
BseRI	GAGGAG	2 cut(s)	79, 82
BseXI	GCAGC	1 cut(s)	508
BshFI	GGCC	3 cut(s)	26, 246, 400
BshVI	ATCGAT	2 cut(s)	332, 474
BsiSI	CCGG	2 cut(s)	222, 258
BsnI	GGCC	3 cut(s)	26, 246, 400
Bsp143I	GATC	3 cut(s)	158, 333, 527
BspACI	CCGC	3 cut(s)	39, 84, 203
BspANI	GGCC	3 cut(s)	26, 246, 400
BspCNI	CTCAG	2 cut(s)	187, 433
BspDI	ATCGAT	2 cut(s)	332, 474
BspHI	TCATGA	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	3 cut(s)	158, 333, 527
BstC8I	GCNNGC	2 cut(s)	259, 398
BstDEI	CTNAG	2 cut(s)	174, 441
BstF5I	GGATG	2 cut(s)	24, 35
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	161, 336, 530
BstMBI	GATC	3 cut(s)	158, 333, 527
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 397
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	2 cut(s)	332, 474
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	26, 246, 400
BsuTUI	ATCGAT	2 cut(s)	332, 474
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	24, 35
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	259, 398
CciI	TCATGA	1 cut(s)	530
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	2 cut(s)	332, 474
CviAII	CATG	4 cut(s)	250, 374, 393, 531
CviJI	RGCY	8 cut(s)	8, 26, 114, 246, 400, 457, 482, 521
CviKI_1	RGCY	8 cut(s)	8, 26, 114, 246, 400, 457, 482, 521
DdeI	CTNAG	2 cut(s)	174, 441
DpnI	GATC	3 cut(s)	160, 335, 529
DpnII	GATC	3 cut(s)	158, 333, 527
DraI	TTTAAA	1 cut(s)	405
EciI	GGCGGA	3 cut(s)	28, 73, 218
Eco147I	AGGCCT	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	253, 377, 396, 534
FaiI	YATR	9 cut(s)	251, 323, 351, 375, 394, 448, 450, 504, 532
FatI	CATG	4 cut(s)	249, 373, 392, 530
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	22, 31
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	26, 246, 400
HapII	CCGG	2 cut(s)	222, 258
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	253, 377, 396, 534
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	206, 229, 359
HpaII	CCGG	2 cut(s)	222, 258
HphI	GGTGA	3 cut(s)	162, 203, 236
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	177, 185, 517
Hpy188III	TCNNGA	1 cut(s)	531
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	16, 37, 112, 118
HpyCH4IV	ACGT	3 cut(s)	48, 180, 234
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 397
HpyF3I	CTNAG	2 cut(s)	174, 441
HpySE526I	ACGT	3 cut(s)	48, 180, 234
Hsp92II	CATG	4 cut(s)	253, 377, 396, 534
HspAI	GCGC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	158, 333, 527
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	227, 235, 271, 382, 453, 512
Lsp1109I	GCAGC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	3 cut(s)	48, 180, 234
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	160, 335, 529
MboI	GATC	3 cut(s)	158, 333, 527
MboII	GAAGA	3 cut(s)	72, 269, 506
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	1 cut(s)	485
MnlI	CCTC	9 cut(s)	54, 97, 100, 103, 126, 183, 193, 293, 436
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	404
MspI	CCGG	2 cut(s)	222, 258
MwoI	GCNNNNNNNGC	2 cut(s)	300, 397
NaeI	GCCGGC	1 cut(s)	259
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	3 cut(s)	158, 333, 527
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	4 cut(s)	253, 377, 396, 534
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	206, 229, 359
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	158, 333, 527
Sau96I	GGNCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	485
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	3 cut(s)	39, 84, 203
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	26
TaiI	ACGT	3 cut(s)	51, 183, 237
TaqI	TCGA	3 cut(s)	332, 474, 526
TasI	AATT	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	206, 229, 359
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	19, 24, 35, 492
TspRI	CASTG	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.