Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

24237112 .. 24237928

Gene Structure 817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGAGAAACTGCAATCTGGAGCTTCAGCTTCAGCTTCATCATCCTTCTGCTGATTCCAGCTTCCCTAACCCTAATGAAACCCAGCAACAAGAACAGCACGAACAACAGCAGCAGCAGCAGCAGCAGATGACAATTTTTTACAACAGAATGATGTGCGTTCGTGATGTTACAGAGCTTCAGGCCAGATCCATCATTTTTCTTGCAAACAAAGAAATGGAAGAGAGGGTAAAGAGTCCATTTACTCCAAATGGATCATCAGAACCACCTTCACCAAATTTTATGTCTCCGCTGGGTAGCCCAGTTGCTGGCACGTCTCTGAAGAGATCACTCCAAAGCTTTTTGCAGAAGAGAAAGCATCGGAATCAAGCAACATCTCCATACCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

9.14

Isoelectric Point (pI)

98.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	38 - 70	9.4e-10	tify domain
Jas_motif	PF09425	108 - 128	6.3e-08	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	2 cut(s)	183, 262
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	4 cut(s)	11, 17, 164, 341
AfiI	CCNNNNNNNGG	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	315
AluBI	AGCT	6 cut(s)	25, 31, 37, 63, 178, 339
AluI	AGCT	6 cut(s)	25, 31, 37, 63, 178, 339
Alw26I	GTCTC	2 cut(s)	291, 321
AlwI	GGATC	2 cut(s)	183, 262
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	112, 115, 118, 121, 124
ApoI	RAATTY	1 cut(s)	277
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AsuHPI	GGTGA	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	124, 127, 130, 133, 136
BccI	CCATC	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	291, 321
BfaI	CTAG	1 cut(s)	391
BisI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
BlsI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
BmgBI	CACGTC	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	5 cut(s)	124, 127, 130, 133, 136
BseYI	CCCAGC	2 cut(s)	84, 292
BshFI	GGCC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	291, 321
BsmBI	CGTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	188, 254, 326
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	183, 262
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	188, 254, 326
Bst6I	CTCTTC	3 cut(s)	216, 317, 344
BstC8I	GCNNGC	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	191, 257, 329
BstMAI	GTCTC	2 cut(s)	291, 321
BstMBI	GATC	3 cut(s)	188, 254, 326
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
BstV1I	GCAGC	5 cut(s)	124, 127, 130, 133, 136
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	308
CviJI	RGCY	8 cut(s)	25, 31, 37, 63, 178, 185, 300, 339
CviKI_1	RGCY	8 cut(s)	25, 31, 37, 63, 178, 185, 300, 339
DpnI	GATC	3 cut(s)	190, 256, 328
DpnII	GATC	3 cut(s)	188, 254, 326
Eam1104I	CTCTTC	3 cut(s)	216, 317, 344
EarI	CTCTTC	3 cut(s)	216, 317, 344
Eco57I	CTGAAG	4 cut(s)	11, 17, 164, 341
Esp3I	CGTCTC	1 cut(s)	321
FaiI	YATR	2 cut(s)	284, 382
Fnu4HI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
FspBI	CTAG	1 cut(s)	391
GluI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
GsaI	CCCAGC	2 cut(s)	88, 296
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	56, 235, 364
HphI	GGTGA	1 cut(s)	264
Hpy188I	TCNGA	3 cut(s)	262, 321, 363
Hpy188III	TCNNGA	2 cut(s)	20, 164
HpyAV	CCTTC	2 cut(s)	57, 279
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	15, 206, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
HpySE526I	ACGT	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	188, 254, 326
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	5, 73, 98, 167, 199, 278, 294, 315
Lsp1109I	GCAGC	5 cut(s)	124, 127, 130, 133, 136
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	190, 256, 328
MboI	GATC	3 cut(s)	188, 254, 326
MboII	GAAGA	3 cut(s)	233, 334, 361
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	2 cut(s)	135, 277
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
NdeII	GATC	3 cut(s)	188, 254, 326
PfeI	GAWTC	2 cut(s)	56, 364
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PspFI	CCCAGC	2 cut(s)	84, 292
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	188
SatI	GCNGC	5 cut(s)	113, 116, 119, 122, 125
Sau3AI	GATC	3 cut(s)	188, 254, 326
SchI	GAGTC	1 cut(s)	244
SetI	ASST	8 cut(s)	27, 33, 39, 65, 180, 271, 317, 341
SfaNI	GCATC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	135, 277
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	391
TaiI	ACGT	1 cut(s)	317
TasI	AATT	2 cut(s)	135, 277
TfiI	GAWTC	2 cut(s)	56, 364
TseI	GCWGC	5 cut(s)	112, 115, 118, 121, 124
TspDTI	ATGAA	2 cut(s)	29, 93
Van91I	CCANNNNNTGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.