Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

24247360 .. 24248098

Gene Structure 739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGGAGGAACTGCAATTTGGAGCTTCAGTTATGCTTTCCAGGTGCTAATGAAACCCAGCAACAAGAACAGCAGCAGCAGATGACCATATTTTACAACGGAGTAGCGTGCGTTAGTGATGTTACAGAGCTTCAGGCCAGATCGATCATTTTTCTTGCAAACAAAGAAATGGAAGAAAGGGTGAAGAGTCCCTTTACTCCAAGTGGATCATCAGAACCACCTTCACCAACTGTAATGTCTCCGCTGTGTAGCCCCGTTGCCGGTATGTCTATGAAGAGATCACTCCAAAGGTTTTTGCAGAAGAGAAGGCATCGGACTCAAGCAACATCTCCGTACCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

115

Amino Acids

12.99

Weight (kDa)

9.13

Isoelectric Point (pI)

109.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	23 - 54	3.9e-12	tify domain
Jas_motif	PF09425	92 - 112	2.3e-09	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	11, 116
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	25, 130
AluI	AGCT	2 cut(s)	25, 130
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	73, 76
AsuHPI	GGTGA	2 cut(s)	193, 216
BbvI	GCAGC	2 cut(s)	85, 88
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	74, 77
BlsI	GCNGC	2 cut(s)	75, 78
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	85, 88
BseYI	CCCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	140, 144, 206, 278
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	137
BspDI	ATCGAT	1 cut(s)	143
BspPI	GGATC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	4 cut(s)	140, 144, 206, 278
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	3 cut(s)	179, 269, 296
BstC8I	GCNNGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	143, 147, 209, 281
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	140, 144, 206, 278
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	85, 88
Bsu15I	ATCGAT	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	334
CviJI	RGCY	4 cut(s)	25, 130, 137, 252
CviKI_1	RGCY	4 cut(s)	25, 130, 137, 252
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	4 cut(s)	142, 146, 208, 280
DpnII	GATC	4 cut(s)	140, 144, 206, 278
Eam1104I	CTCTTC	3 cut(s)	179, 269, 296
EarI	CTCTTC	3 cut(s)	179, 269, 296
Eco57I	CTGAAG	2 cut(s)	11, 116
EcoRII	CCWGG	1 cut(s)	40
FaiI	YATR	4 cut(s)	34, 89, 266, 272
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	74, 77
Fsp4HI	GCNGC	2 cut(s)	74, 77
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	2 cut(s)	74, 77
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	261
HinfI	GANTC	2 cut(s)	187, 316
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	193, 216
Hpy188I	TCNGA	2 cut(s)	214, 315
HpyAV	CCTTC	2 cut(s)	231, 300
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	15, 158, 298
Kzo9I	GATC	4 cut(s)	140, 144, 206, 278
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	27, 54, 71, 119, 151, 274
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	142, 146, 208, 280
MboI	GATC	4 cut(s)	140, 144, 206, 278
MboII	GAAGA	4 cut(s)	185, 196, 286, 313
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	196, 310
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
NdeII	GATC	4 cut(s)	140, 144, 206, 278
PkrI	GCNGC	2 cut(s)	75, 78
PleI	GAGTC	2 cut(s)	195, 310
PpsI	GAGTC	2 cut(s)	195, 310
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SatI	GCNGC	2 cut(s)	74, 77
Sau3AI	GATC	4 cut(s)	140, 144, 206, 278
SchI	GAGTC	2 cut(s)	196, 310
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	5 cut(s)	27, 46, 132, 223, 293
SfaNI	GCATC	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	16
TseI	GCWGC	2 cut(s)	73, 76
TspDTI	ATGAA	2 cut(s)	66, 287
TspGWI	ACGGA	2 cut(s)	114, 321
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.