pycom10g21940

Glycosyl transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008615
Physical Location & Seq
Forward (+)
24499997 .. 24503071
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1545 bp
ATGACGTCGTCATCATCTTATTCTCTCACTCTCCTCCGCCATCTCTCTCCTCTCCAACTCTCTCGCTCCCGCCACTGCTCCTCCTCGCTTTGCACACCCGTTCGCCGCCGATCCGTTTCGGCCTTTTCGTTTCGGAGTTCCCGTATCCGATACGATCTTCAGTTGATCGGGCGGAGAAATGGGCGCCGCTTTCGCTACAGTTCTGTCGATTTTGGGTCCTTTGATTCTGAATCAGCTGATATAACACCACTTGATGATTGGGGGACCGGACGTGAAGAGTCTACAGGGTACATGATTTATTCCAGCGGCGAAGATAGTGACGGAGAGTTTGTAGTAACCCCCGTTGCTGACATTGATTTGCCTGCCATCACCGTAGCAGCTGATGATGCTAGGACTGTCACTGCTCACCGGCTTGCAATGCTTGGACGTCAGCGTAAGAAGCACAGGATCAGACATGGCGTATTACTCAACATGGGATTGATACTGTTCTTAGTGGTGTTACTTTTATATGTGGATTCATGTGCGTGGAGGATTGTTAGACTACCTTTGGCACCTTTTCACTTGACATGCCCCTTTTTTGTTTCAGCCATTTTAGCCTCTTGCGCGGGATATGTTTGTGTTCCTCTACTCTATGTCTTGAAGATTCGTCAAATTATCAGAAAAGAAGGGCCTGCGAGGCACTCCTTAAAGAAAAGAACTCCCACGATGGGTGGACTATTTTTTATACCAATTGGTGTAATTGTTGCGAAATTTATTGCCGGTTTTTCCTCTGTTGAAGTTTCTGGAGCTGCTGCAGCAACTCTTGCATTTGCTGCAATTGGGCTACTTGATGATATCTTAAGCCTCGTCAAGAAACATAACACTGGTTTATTTGCATGGACAAAATTTATTTTGGAGGTAGCTGTTGGAACATGGTTTTCGTATTGGTTGCATACAGCAAATGTATCATCACCCTATGGCATGAAACTGTTGGTTCCTCTACCTGCACTAGGACTCGTGTTCCTGGGAAAATGCTATCTAATGTTGGCTTCATTCTGTTTCGTATCTATGGGAAATGGGGTTAACTTAACAGATGGTCTTGATGGTCTGGCTGGAGGGTCTGCTGCATTGGCTTTTGTAGGAATGTCGATTGCAGTTCTTCCAATATGTTCTGACCTTGCTATATTTGGAGCATCAATGGCAGGAGCTTGTGTCGGTTTTCTTTTGCACAACCGATACAAGGCATCTGTATTCATGGGTGATACCGGATCCCTGGGACTTGGGGGAGGGTTAGCTGCAATGGCTTGTTGCACAGGGATGTTTTTCCCTTTATTTATTTCATCTGGAATCTTTGTCATCGAAGCCTCATCAGTTATTTTGCAGGTACTATACTTCAAGACAACCAAGCGTTTACATGGAGCTGGGCGCCGTCTCTTCCGAATGGCACCCTTTCATCACCACCTTGAACTATGTGGATTAAAAGAACCGGTCATTGTTGCTGGTGCATACGCTATATCGTCCATACTCGCGGTGTGTGCGGGTTATCTTGGCCTTATTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 ko03010 map00550 map01100 map01502 map03010
Pfam Domains
Protein Families
Glycos_transf_4 Ribosomal_S11

Protein Analysis

515

Amino Acids

55.45

Weight (kDa)

9.44

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 263 - 429 3.3e-24 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 8, 430
Acc36I ACCTGC 2 cut(s) 991, 1351
AccB1I GGYRCC 4 cut(s) 183, 550, 1404, 1423
AccI GTMKAC 1 cut(s) 281
AccII CGCG 2 cut(s) 605, 1508
AciI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
AclWI GGATC 4 cut(s) 105, 455, 1242, 1255
AcsI RAATTY 2 cut(s) 749, 884
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 4 cut(s) 5, 184, 427, 1405
AfaI GTAC 2 cut(s) 290, 1365
AfiI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
AflII CTTAAG 1 cut(s) 838
AgeI ACCGGT 1 cut(s) 1465
AgsI TTSAA 4 cut(s) 640, 776, 1375, 1445
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 2 cut(s) 1002, 1251
AluBI AGCT 7 cut(s) 236, 380, 788, 902, 1187, 1274, 1400
AluI AGCT 7 cut(s) 236, 380, 788, 902, 1187, 1274, 1400
Alw26I GTCTC 1 cut(s) 1415
AlwI GGATC 4 cut(s) 105, 455, 1242, 1255
AoxI GGCC 3 cut(s) 120, 668, 1528
ApeKI GCWGC 7 cut(s) 377, 788, 791, 794, 812, 1103, 1274
ApoI RAATTY 2 cut(s) 749, 884
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 1465
AspLEI GCGC 3 cut(s) 186, 605, 1407
AspS9I GGNCC 3 cut(s) 216, 264, 668
AsuHPI GGTGA 5 cut(s) 361, 398, 942, 1250, 1427
AvaII GGWCC 2 cut(s) 216, 264
BamHI GGATCC 1 cut(s) 1247
BanI GGYRCC 4 cut(s) 183, 550, 1404, 1423
BauI CACGAG 1 cut(s) 995
BbvI GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BccI CCATC 5 cut(s) 48, 374, 700, 1067, 1076
BceAI ACGGC 1 cut(s) 1392
BciT130I CCWGG 2 cut(s) 1004, 1253
BciVI GTATCC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 1415
BfaI CTAG 2 cut(s) 390, 989
BfmI CTRYAG 3 cut(s) 196, 282, 792
BfoI RGCGCY 2 cut(s) 187, 1408
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 2 cut(s) 991, 1351
BfuI GTATCC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 676
Bme1390I CCNGG 2 cut(s) 1004, 1253
Bme18I GGWCC 2 cut(s) 216, 264
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 216, 264, 668
BmiI GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
BmrFI CCNGG 2 cut(s) 1004, 1253
BmsI GCATC 3 cut(s) 376, 1181, 1232
BpmI CTGGAG 2 cut(s) 804, 1113
BsaHI GRCGYC 4 cut(s) 5, 184, 427, 1405
BsaJI CCNNGG 3 cut(s) 1003, 1251, 1252
BsaWI WCCGGW 3 cut(s) 266, 1244, 1465
BsaXI ACNNNNNCTCC 8 cut(s) 65, 95, 127, 157, 315, 345, 1176, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 707, 989, 1219
Bse118I RCCGGY 3 cut(s) 408, 758, 1465
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 2 cut(s) 423, 1284
BseBI CCWGG 2 cut(s) 1004, 1253
BseDI CCNNGG 3 cut(s) 1003, 1251, 1252
BseGI GGATG 1 cut(s) 1302
BseLI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
BseMI GCAATG 2 cut(s) 423, 1284
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 4 cut(s) 23, 39, 70, 73
BseXI GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BseYI CCCAGC 1 cut(s) 1400
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 2 cut(s) 605, 1508
BshFI GGCC 3 cut(s) 122, 670, 1530
BshNI GGYRCC 4 cut(s) 183, 550, 1404, 1423
BshTI ACCGGT 1 cut(s) 1465
BsiSI CCGG 5 cut(s) 267, 409, 759, 1245, 1466
BslFI GGGAC 2 cut(s) 277, 1269
BslI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
BsmAI GTCTC 1 cut(s) 1415
BsmBI CGTCTC 1 cut(s) 1415
BsmFI GGGAC 2 cut(s) 277, 1269
BsnI GGCC 3 cut(s) 122, 670, 1530
Bsp143I GATC 5 cut(s) 110, 154, 165, 447, 1247
BspACI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
BspANI GGCC 3 cut(s) 122, 670, 1530
BspFNI CGCG 2 cut(s) 605, 1508
BspLI GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 2 cut(s) 991, 1351
BspPI GGATC 4 cut(s) 105, 455, 1242, 1255
BspT107I GGYRCC 4 cut(s) 183, 550, 1404, 1423
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 423, 1284
BsrFI RCCGGY 3 cut(s) 408, 758, 1465
BsrI ACTGG 1 cut(s) 868
BssAI RCCGGY 3 cut(s) 408, 758, 1465
BssECI CCNNGG 3 cut(s) 1003, 1251, 1252
BssMI GATC 5 cut(s) 110, 154, 165, 447, 1247
BssNI GRCGYC 4 cut(s) 5, 184, 427, 1405
BssSI CACGAG 1 cut(s) 995
Bst2BI CACGAG 1 cut(s) 995
Bst2UI CCWGG 2 cut(s) 1004, 1253
Bst4CI ACNGT 5 cut(s) 200, 373, 397, 486, 969
Bst6I CTCTTC 2 cut(s) 270, 1418
BstACI GRCGYC 4 cut(s) 5, 184, 427, 1405
BstAFI CTTAAG 1 cut(s) 838
BstAPI GCANNNNNTGC 2 cut(s) 803, 812
BstC8I GCNNGC 3 cut(s) 363, 414, 672
BstDEI CTNAG 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 1 cut(s) 1302
BstFNI CGCG 2 cut(s) 605, 1508
BstH2I RGCGCY 2 cut(s) 187, 1408
BstHHI GCGC 3 cut(s) 186, 605, 1407
BstKTI GATC 5 cut(s) 113, 157, 168, 450, 1250
BstMAI GTCTC 1 cut(s) 1415
BstMBI GATC 5 cut(s) 110, 154, 165, 447, 1247
BstNI CCWGG 2 cut(s) 1004, 1253
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 1002, 1251
BstSFI CTRYAG 3 cut(s) 196, 282, 792
BstUI CGCG 2 cut(s) 605, 1508
BstV1I GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BstX2I RGATCY 1 cut(s) 1247
BstYI RGATCY 1 cut(s) 1247
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 122, 670, 1530
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 1302
BtsI GCAGTG 2 cut(s) 73, 399
BtsIMutI CAGTG 3 cut(s) 73, 399, 861
BveI ACCTGC 2 cut(s) 991, 1351
Cac8I GCNNGC 3 cut(s) 363, 414, 672
CfoI GCGC 3 cut(s) 186, 605, 1407
Cfr10I RCCGGY 3 cut(s) 408, 758, 1465
Cfr13I GGNCC 3 cut(s) 216, 264, 668
Csp6I GTAC 2 cut(s) 289, 1364
CspAI ACCGGT 1 cut(s) 1465
CviQI GTAC 2 cut(s) 289, 1364
DdeI CTNAG 1 cut(s) 490
DinI GGCGCC 2 cut(s) 185, 1406
DpnI GATC 5 cut(s) 112, 156, 167, 449, 1249
DpnII GATC 5 cut(s) 110, 154, 165, 447, 1247
Eam1104I CTCTTC 2 cut(s) 270, 1418
EarI CTCTTC 2 cut(s) 270, 1418
EciI GGCGGA 2 cut(s) 26, 187
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 216, 264
Eco57I CTGAAG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 216, 668
EcoRII CCWGG 2 cut(s) 1002, 1251
EcoRV GATATC 1 cut(s) 835
EgeI GGCGCC 2 cut(s) 185, 1406
EheI GGCGCC 2 cut(s) 185, 1406
Esp3I CGTCTC 1 cut(s) 1415
FaqI GGGAC 2 cut(s) 277, 1269
FauI CCCGC 3 cut(s) 77, 598, 1510
FblI GTMKAC 1 cut(s) 281
FokI GGATG 1 cut(s) 1309
FspBI CTAG 2 cut(s) 390, 989
GlaI GCGC 3 cut(s) 185, 604, 1406
GsaI CCCAGC 1 cut(s) 1404
GsuI CTGGAG 2 cut(s) 804, 1113
HaeII RGCGCY 2 cut(s) 187, 1408
HaeIII GGCC 3 cut(s) 122, 670, 1530
HapII CCGG 5 cut(s) 267, 409, 759, 1245, 1466
HhaI GCGC 3 cut(s) 186, 605, 1407
Hin1I GRCGYC 4 cut(s) 5, 184, 427, 1405
Hin6I GCGC 3 cut(s) 184, 603, 1405
HinP1I GCGC 3 cut(s) 184, 603, 1405
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 7 cut(s) 224, 230, 278, 515, 643, 993, 1326
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 5 cut(s) 267, 409, 759, 1245, 1466
HphI GGTGA 5 cut(s) 361, 398, 942, 1250, 1427
Hpy166II GTNNAC 4 cut(s) 282, 713, 1063, 1391
Hpy188I TCNGA 7 cut(s) 135, 149, 229, 452, 659, 1153, 1418
Hpy188III TCNNGA 6 cut(s) 637, 783, 850, 1079, 1323, 1375
Hpy8I GTNNAC 4 cut(s) 282, 713, 1063, 1391
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 5 cut(s) 200, 373, 397, 486, 969
HpyCH4IV ACGT 3 cut(s) 5, 271, 427
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 3 cut(s) 5, 271, 427
Hsp92I GRCGYC 4 cut(s) 5, 184, 427, 1405
HspAI GCGC 3 cut(s) 184, 603, 1405
KasI GGCGCC 2 cut(s) 183, 1404
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 5 cut(s) 110, 154, 165, 447, 1247
LmnI GCTCC 6 cut(s) 71, 83, 785, 1169, 1184, 1397
Lsp1109I GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
LweI GCATC 3 cut(s) 376, 1181, 1232
MaeI CTAG 2 cut(s) 390, 989
MaeII ACGT 3 cut(s) 5, 271, 427
MaeIII GTNAC 4 cut(s) 317, 334, 397, 498
MalI GATC 5 cut(s) 112, 156, 167, 449, 1249
MboI GATC 5 cut(s) 110, 154, 165, 447, 1247
MboII GAAGA 6 cut(s) 149, 287, 323, 652, 1130, 1405
MfeI CAATTG 2 cut(s) 729, 816
MflI RGATCY 1 cut(s) 1247
MluCI AATT 6 cut(s) 651, 729, 738, 749, 816, 884
Mly113I GGCGCC 2 cut(s) 184, 1405
MlyI GAGTC 2 cut(s) 287, 987
MmeI TCCRAC 2 cut(s) 79, 886
MseI TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
MslI CAYNNNNRTG 2 cut(s) 523, 1295
MspA1I CMGCKG 3 cut(s) 236, 306, 380
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 5 cut(s) 267, 409, 759, 1245, 1466
MspR9I CCNGG 2 cut(s) 1004, 1253
MunI CAATTG 2 cut(s) 729, 816
MvaI CCWGG 2 cut(s) 1004, 1253
MvnI CGCG 2 cut(s) 605, 1508
NarI GGCGCC 2 cut(s) 184, 1405
NdeII GATC 5 cut(s) 110, 154, 165, 447, 1247
NlaIV GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
NmuCI GTSAC 2 cut(s) 317, 397
NspI RCATGY 1 cut(s) 570
PasI CCCWGGG 1 cut(s) 1252
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 139
PfeI GAWTC 5 cut(s) 224, 230, 515, 643, 1326
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 1465
PleI GAGTC 2 cut(s) 286, 987
PluTI GGCGCC 2 cut(s) 187, 1408
PpsI GAGTC 2 cut(s) 286, 987
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 1002, 1251
PspFI CCCAGC 1 cut(s) 1400
PspGI CCWGG 2 cut(s) 1002, 1251
PspN4I GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
PspPI GGNCC 3 cut(s) 216, 264, 668
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 1247
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 2 cut(s) 236, 380
RsaI GTAC 2 cut(s) 290, 1365
RsaNI GTAC 2 cut(s) 289, 1364
RseI CAYNNNNRTG 2 cut(s) 523, 1295
SaqAI TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
Sau3AI GATC 5 cut(s) 110, 154, 165, 447, 1247
Sau96I GGNCC 3 cut(s) 216, 264, 668
SchI GAGTC 2 cut(s) 287, 987
ScrFI CCNGG 2 cut(s) 1004, 1253
SfaNI GCATC 3 cut(s) 376, 1181, 1232
SfcI CTRYAG 3 cut(s) 196, 282, 792
SfoI GGCGCC 2 cut(s) 185, 1406
SinI GGWCC 2 cut(s) 216, 264
SmiMI CAYNNNNRTG 2 cut(s) 523, 1295
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
Sse9I AATT 6 cut(s) 651, 729, 738, 749, 816, 884
SsiI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
SspDI GGCGCC 2 cut(s) 183, 1404
SspMI CTAG 2 cut(s) 390, 989
StyD4I CCNGG 2 cut(s) 1002, 1251
TaaI ACNGT 5 cut(s) 200, 373, 397, 486, 969
TaiI ACGT 3 cut(s) 8, 274, 430
TaqI TCGA 3 cut(s) 207, 1127, 1338
TasI AATT 6 cut(s) 651, 729, 738, 749, 816, 884
TauI GCSGC 3 cut(s) 108, 189, 309
TfiI GAWTC 5 cut(s) 224, 230, 515, 643, 1326
Tru1I TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
Tru9I TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
TscAI CASTG 3 cut(s) 80, 406, 868
TseFI GTSAC 2 cut(s) 317, 397
TseI GCWGC 7 cut(s) 377, 788, 791, 794, 812, 1103, 1274
Tsp45I GTSAC 2 cut(s) 317, 397
TspDTI ATGAA 6 cut(s) 507, 977, 1020, 1222, 1308, 1421
TspGWI ACGGA 2 cut(s) 103, 336
TspRI CASTG 3 cut(s) 80, 406, 868
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 216, 264
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 2 cut(s) 749, 884
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 2 cut(s) 390, 989
ZraI GACGTC 2 cut(s) 6, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.