Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Reverse (-)

25206517 .. 25208926

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGATAATGGAAACTGGTGTTGATCCATTAGCCTTGATGTCACAACTAGCAACGGTAATTACAGATATACTTGCTGGCAGCTATGATATTAGAAAAGAAAGGCGTAGAAGGAAGTTCTTTCATAACCAACCATTATCGAAGGAAGACATGGAGAAATTGCGTCAAGCTTTGAAAACTTTATCTGAGGCTGAGAAACAATTGAGGATGTCAAATGTCAAGTTAACAAGGCTAACAGCTGCACTACTCCAACTTGCTCCTGATCAACAGTATATGCTGCCTAGTTATTCTGGAGACGCAAGTTTCTTTCACAGTCCCTTGGCCTTAAATAATGTGGGCGGAAGGAATGCGGTCAGGAAAGATAGTGTACAAGGTGGGATGCCAAATTATGAGAAAGGTCTGCCAACTAATGTTAGAAATTCTGTAAGTTCTGGGAAAGGTATGATTTCAGATAGAAAACGTCATGCTGCATCGGGTATGGCTTCTCAACAGACGGCCACAGGCTCTGCTGAAATGGTCAGGGTAAATGGGAAGCAAATCCATGGCAAAAGCCATAAAGGAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCGTATAATCGAATTAAAGAATTTTTGTACCAAGAAGGGAAGCTGACCTCAGTCAGTTTTGGTGCAGCTCCCACTGCGCAGTTGATGTTCTCTTCGCATATGACTAAATCTACCGCAGAGAAGTTCAGAACGCAGATTTTGCAGGCATTTGAGATTGTTCTAGGGTCTCCCCTGACAATTGAAATTAGATGTGAATCAAAAAGAAATAGTAAAGAATGGGCTCAGATGCCTATTATTATACCAGCTTCAAAGGATGGTTCATCCCATATTAGAGATGAAAATGCAGTCACCACCGATTCCCAGCTCGTGGCCCATGATACCCGTGAATTGGGCACGAGTGAAATTGTTGAAGTAGCTGCTTCTCCTAGGGAAAGCAAGGGTGGCGGTCAAATTCATAACCAAAAGAAATCAACCATGGCGATAATTCCAGAAAAACAACAAAGTCAGAATCAAAGCATTGTCAGGAGCAAGGTGTCCCTTGCACACGTAATTCAGCAGTCAGAGTCGCAACGCAGTGGATGGTCACAACACAAAGCTGTTTCCATTGCTGAAAAGCTCGAACAAGATAATTTGAGACTGGAATCTCGATCGAGAAGTTTGCTTTGCTGGAAAGCATCTAGAGTAACTCGTCGAAGGCTTTCGCGGTTGAAGATAAGGGCACGAAGACCGCATTCGTTACTGAAGCTTGTGTCCTGCGGAAAGTGTCTGTCTTCAAGGTCTCCTAGGGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

443

Amino Acids

49.34

Weight (kDa)

10.1

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	181 - 262	2.6e-28	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccII	CGCG	1 cut(s)	1237
AciI	CCGC	7 cut(s)	336, 347, 708, 978, 1237, 1262, 1290
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	5 cut(s)	415, 567, 591, 614, 984
AcuI	CTGAAG	1 cut(s)	1295
AfaI	GTAC	2 cut(s)	366, 623
AfiI	CCNNNNNNNGG	2 cut(s)	901, 922
AflIII	ACRYGT	1 cut(s)	1078
AgsI	TTSAA	7 cut(s)	172, 563, 776, 843, 944, 1243, 1308
Alw26I	GTCTC	4 cut(s)	285, 765, 1162, 1317
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	318, 492, 903
ApeKI	GCWGC	6 cut(s)	78, 236, 274, 464, 659, 950
ApoI	RAATTY	5 cut(s)	415, 567, 591, 614, 984
Asp700I	GAANNNNTTC	1 cut(s)	1231
AspA2I	CCTAGG	2 cut(s)	959, 1316
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	1 cut(s)	874
AvrII	CCTAGG	2 cut(s)	959, 1316
BaeGI	GKGCMC	2 cut(s)	929, 1255
BanII	GRGCYC	1 cut(s)	817
BauI	CACGAG	2 cut(s)	899, 928
BbsI	GAAGAC	3 cut(s)	150, 1264, 1296
BbvI	GCAGC	6 cut(s)	90, 223, 261, 451, 671, 937
BccI	CCATC	2 cut(s)	842, 1107
BceAI	ACGGC	1 cut(s)	507
BcgI	CGANNNNNNTGC	2 cut(s)	1174, 1208
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	4 cut(s)	285, 765, 1162, 1317
BfaI	CTAG	6 cut(s)	47, 279, 755, 960, 1212, 1317
BisI	GCNGC	6 cut(s)	79, 237, 275, 465, 660, 951
BlnI	CCTAGG	2 cut(s)	959, 1316
BlsI	GCNGC	6 cut(s)	80, 238, 276, 466, 661, 952
BmgT120I	GGNCC	1 cut(s)	904
BmsI	GCATC	4 cut(s)	366, 476, 810, 1217
BoxI	GACNNNNGTC	1 cut(s)	644
BpiI	GAAGAC	3 cut(s)	150, 1264, 1296
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	1081
BsaBI	GATNNNNATC	1 cut(s)	787
BsaI	GGTCTC	2 cut(s)	765, 1317
BsaJI	CCNNGG	5 cut(s)	315, 538, 959, 1008, 1316
Bsc4I	CCNNNNNNNGG	2 cut(s)	901, 922
Bse1I	ACTGG	2 cut(s)	19, 1176
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	1 cut(s)	787
BseDI	CCNNGG	5 cut(s)	315, 538, 959, 1008, 1316
BseGI	GGATG	5 cut(s)	210, 381, 853, 854, 1118
BseJI	GATNNNNATC	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	901, 922
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	4 cut(s)	174, 180, 657, 830
BseNI	ACTGG	2 cut(s)	19, 1176
BseSI	GKGCMC	2 cut(s)	929, 1255
BseXI	GCAGC	6 cut(s)	90, 223, 261, 451, 671, 937
BseYI	CCCAGC	1 cut(s)	894
BsgI	GTGCAG	2 cut(s)	222, 678
Bsh1236I	CGCG	1 cut(s)	1237
Bsh1285I	CGRYCG	1 cut(s)	1184
BshFI	GGCC	3 cut(s)	320, 494, 905
BsiEI	CGRYCG	1 cut(s)	1184
BslFI	GGGAC	2 cut(s)	297, 1054
BslI	CCNNNNNNNGG	2 cut(s)	901, 922
BsmAI	GTCTC	4 cut(s)	285, 765, 1162, 1317
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	297, 1054
BsmI	GAATGC	2 cut(s)	349, 1264
BsnI	GGCC	3 cut(s)	320, 494, 905
Bso31I	GGTCTC	2 cut(s)	765, 1317
Bsp1286I	GDGCHC	3 cut(s)	817, 929, 1255
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	22, 259, 1181
Bsp19I	CCATGG	2 cut(s)	538, 1008
BspACI	CCGC	7 cut(s)	336, 347, 708, 978, 1237, 1262, 1290
BspANI	GGCC	3 cut(s)	320, 494, 905
BspCNI	CTCAG	4 cut(s)	175, 181, 656, 829
BspFNI	CGCG	1 cut(s)	1237
BspPI	GGATC	1 cut(s)	17
BspTNI	GGTCTC	2 cut(s)	765, 1317
BsrDI	GCAATG	1 cut(s)	1137
BsrGI	TGTACA	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	19, 1176
BssECI	CCNNGG	5 cut(s)	315, 538, 959, 1008, 1316
BssMI	GATC	3 cut(s)	22, 259, 1181
BssSI	CACGAG	2 cut(s)	899, 928
BssT1I	CCWWGG	5 cut(s)	315, 538, 959, 1008, 1316
Bst2BI	CACGAG	2 cut(s)	899, 928
Bst4CI	ACNGT	3 cut(s)	55, 267, 311
Bst6I	CTCTTC	1 cut(s)	691
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	1081
BstC8I	GCNNGC	2 cut(s)	76, 738
BstDEI	CTNAG	4 cut(s)	183, 189, 643, 816
BstDSI	CCRYGG	2 cut(s)	538, 1008
BstF5I	GGATG	5 cut(s)	210, 381, 853, 854, 1118
BstFNI	CGCG	1 cut(s)	1237
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	25, 262, 1184
BstMAI	GTCTC	4 cut(s)	285, 765, 1162, 1317
BstMBI	GATC	3 cut(s)	22, 259, 1181
BstMCI	CGRYCG	1 cut(s)	1184
BstMWI	GCNNNNNNNGC	3 cut(s)	668, 733, 975
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSLI	GKGCMC	2 cut(s)	929, 1255
BstUI	CGCG	1 cut(s)	1237
BstV1I	GCAGC	6 cut(s)	90, 223, 261, 451, 671, 937
BstV2I	GAAGAC	3 cut(s)	150, 1264, 1296
BsuRI	GGCC	3 cut(s)	320, 494, 905
BtgI	CCRYGG	2 cut(s)	538, 1008
BtsCI	GGATG	5 cut(s)	210, 381, 853, 854, 1118
BtsI	GCAGTG	2 cut(s)	666, 1114
BtsIMutI	CAGTG	2 cut(s)	666, 1114
Cac8I	GCNNGC	2 cut(s)	76, 738
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	2 cut(s)	149, 302
Csp6I	GTAC	2 cut(s)	365, 622
CviAII	CATG	5 cut(s)	148, 461, 539, 908, 1009
CviQI	GTAC	2 cut(s)	365, 622
DdeI	CTNAG	4 cut(s)	183, 189, 643, 816
DpnI	GATC	3 cut(s)	24, 261, 1183
DpnII	GATC	3 cut(s)	22, 259, 1181
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	691
EarI	CTCTTC	1 cut(s)	691
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	5 cut(s)	315, 538, 959, 1008, 1316
Eco24I	GRGCYC	1 cut(s)	817
Eco31I	GGTCTC	2 cut(s)	765, 1317
Eco57I	CTGAAG	1 cut(s)	1295
EcoT14I	CCWWGG	5 cut(s)	315, 538, 959, 1008, 1316
EcoT38I	GRGCYC	1 cut(s)	817
ErhI	CCWWGG	5 cut(s)	315, 538, 959, 1008, 1316
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	5 cut(s)	151, 464, 542, 911, 1012
FaqI	GGGAC	2 cut(s)	297, 1054
FatI	CATG	5 cut(s)	147, 460, 538, 907, 1008
FauNDI	CATATG	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	79, 237, 275, 465, 660, 951
FokI	GGATG	5 cut(s)	217, 388, 841, 860, 1125
FriOI	GRGCYC	1 cut(s)	817
Fsp4HI	GCNGC	6 cut(s)	79, 237, 275, 465, 660, 951
FspBI	CTAG	6 cut(s)	47, 279, 755, 960, 1212, 1317
FspI	TGCGCA	1 cut(s)	672
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	6 cut(s)	79, 237, 275, 465, 660, 951
GsaI	CCCAGC	1 cut(s)	898
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	320, 494, 905
HgaI	GACGC	2 cut(s)	149, 302
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	5 cut(s)	151, 464, 542, 911, 1012
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	2 cut(s)	165, 1277
HinfI	GANTC	5 cut(s)	788, 890, 1042, 1097, 1175
HpaI	GTTAAC	1 cut(s)	222
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	2 cut(s)	222, 365
Hpy188I	TCNGA	6 cut(s)	184, 448, 722, 819, 1041, 1096
Hpy188III	TCNNGA	8 cut(s)	257, 288, 352, 1022, 1057, 1179, 1185, 1212
Hpy8I	GTNNAC	2 cut(s)	222, 365
Hpy99I	CGWCG	1 cut(s)	1227
HpyAV	CCTTC	5 cut(s)	102, 133, 333, 623, 1221
HpyCH4III	ACNGT	3 cut(s)	55, 267, 311
HpyCH4IV	ACGT	2 cut(s)	457, 1080
HpyCH4V	TGCA	6 cut(s)	239, 467, 659, 736, 878, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	668, 733, 975
HpyF3I	CTNAG	4 cut(s)	183, 189, 643, 816
HpySE526I	ACGT	2 cut(s)	457, 1080
Hsp92II	CATG	5 cut(s)	151, 464, 542, 911, 1012
HspAI	GCGC	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	22, 259, 1181
LmnI	GCTCC	3 cut(s)	259, 667, 1059
Lsp1109I	GCAGC	6 cut(s)	90, 223, 261, 451, 671, 937
LweI	GCATC	4 cut(s)	366, 476, 810, 1217
MaeI	CTAG	6 cut(s)	47, 279, 755, 960, 1212, 1317
MaeII	ACGT	2 cut(s)	457, 1080
MaeIII	GTNAC	5 cut(s)	39, 880, 1116, 1216, 1269
MalI	GATC	3 cut(s)	24, 261, 1183
MboI	GATC	3 cut(s)	22, 259, 1181
MboII	GAAGA	6 cut(s)	155, 575, 678, 1255, 1269, 1296
MfeI	CAATTG	2 cut(s)	197, 771
MhlI	GDGCHC	3 cut(s)	817, 929, 1255
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	2 cut(s)	271, 555
MnlI	CCTC	4 cut(s)	178, 195, 571, 652
MroXI	GAANNNNTTC	1 cut(s)	1231
MseI	TTAA	3 cut(s)	221, 323, 609
MspA1I	CMGCKG	1 cut(s)	236
MunI	CAATTG	2 cut(s)	197, 771
Mva1269I	GAATGC	2 cut(s)	349, 1264
MvnI	CGCG	1 cut(s)	1237
MwoI	GCNNNNNNNGC	3 cut(s)	668, 733, 975
NcoI	CCATGG	2 cut(s)	538, 1008
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	22, 259, 1181
NlaIII	CATG	5 cut(s)	151, 464, 542, 911, 1012
NmuCI	GTSAC	3 cut(s)	39, 880, 1116
NsbI	TGCGCA	1 cut(s)	672
PctI	GAATGC	2 cut(s)	349, 1264
PdmI	GAANNNNTTC	1 cut(s)	1231
PfeI	GAWTC	4 cut(s)	788, 890, 1042, 1175
PflMI	CCANNNNNTGG	1 cut(s)	901
PkrI	GCNGC	6 cut(s)	80, 238, 276, 466, 661, 952
Ple19I	CGATCG	1 cut(s)	1184
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
Ppu21I	YACGTR	1 cut(s)	1081
PshAI	GACNNNNGTC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	894
PspPI	GGNCC	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	503
PvuI	CGATCG	1 cut(s)	1184
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	366, 623
RsaNI	GTAC	2 cut(s)	365, 622
SaqAI	TTAA	3 cut(s)	221, 323, 609
SatI	GCNGC	6 cut(s)	79, 237, 275, 465, 660, 951
Sau3AI	GATC	3 cut(s)	22, 259, 1181
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	1 cut(s)	1106
SduI	GDGCHC	3 cut(s)	817, 929, 1255
SfaNI	GCATC	4 cut(s)	366, 476, 810, 1217
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SsiI	CCGC	7 cut(s)	336, 347, 708, 978, 1237, 1262, 1290
SspMI	CTAG	6 cut(s)	47, 279, 755, 960, 1212, 1317
StyI	CCWWGG	5 cut(s)	315, 538, 959, 1008, 1316
TaaI	ACNGT	3 cut(s)	55, 267, 311
TaiI	ACGT	2 cut(s)	460, 1083
TaqI	TCGA	6 cut(s)	137, 604, 1152, 1180, 1184, 1225
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	4 cut(s)	788, 890, 1042, 1175
Tru1I	TTAA	3 cut(s)	221, 323, 609
Tru9I	TTAA	3 cut(s)	221, 323, 609
TscAI	CASTG	2 cut(s)	673, 1114
TseFI	GTSAC	3 cut(s)	39, 880, 1116
TseI	GCWGC	6 cut(s)	78, 236, 274, 464, 659, 950
Tsp45I	GTSAC	3 cut(s)	39, 880, 1116
TspDTI	ATGAA	4 cut(s)	110, 843, 885, 977
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	673, 1114
Van91I	CCANNNNNTGG	1 cut(s)	901
XapI	RAATTY	5 cut(s)	415, 567, 591, 614, 984
XbaI	TCTAGA	1 cut(s)	1211
XmaJI	CCTAGG	2 cut(s)	959, 1316
XmnI	GAANNNNTTC	1 cut(s)	1231
XspI	CTAG	6 cut(s)	47, 279, 755, 960, 1212, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.