pycom10g23020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014687
Physical Location & Seq
Reverse (-)
25277771 .. 25278380
610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGATTGCATACAGTTTTGCTTTCCCTTATCTTTTCAGCTCCATTATTGCCGATTCCAATCTCCAAATGCCTTCTGGGACTGAGTCTCAGCTCTCTTCCCCTTCTTCTTCTTATTCTTCACCTGGGTTGCCTGACACTTGTCCTCCTCCCACTTCTCCAACTGTGCAGTTGGTCCCAAAATCCACTTCTGATCGACTTCTTCAGAAGTTCTTTGATGCCGCGGAGTTCGACTTTGATTACGAGCAGAGCGGACTGTGGTCTCCTCCGGTCCGGCGTACCGTGTTCCTGAGCTCTCAAGGTAAAATCTTCACTGAACGAGAAATGCTTGCCAGACTTTCAACCCTAACGGATGCTCCTACTGCAAGACACGATAAAGTTTGTTTTGGGGGATGCTGGTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.82

Weight (kDa)

4.96

Isoelectric Point (pI)

74.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 249
AccII CGCG 1 cut(s) 221
AciI CCGC 3 cut(s) 219, 221, 249
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 3 cut(s) 39, 91, 291
AluI AGCT 3 cut(s) 39, 91, 291
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 90, 264
AspS9I GGNCC 2 cut(s) 172, 268
AsuHPI GGTGA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 172, 268
BanII GRGCYC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 90, 264
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 172, 268
BmgT120I GGNCC 2 cut(s) 172, 268
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 205, 340, 380
BoxI GACNNNNGTC 2 cut(s) 138, 256
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 122, 219
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 337, 367
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 122, 219
BseGI GGATG 2 cut(s) 355, 395
BseJI GATNNNNATC 1 cut(s) 57
BseMII CTCAG 3 cut(s) 72, 101, 278
BseRI GAGGAG 2 cut(s) 135, 252
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 2 cut(s) 266, 271
BslFI GGGAC 2 cut(s) 91, 158
BsmAI GTCTC 2 cut(s) 90, 264
BsmFI GGGAC 2 cut(s) 91, 158
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 3 cut(s) 219, 221, 249
BspCNI CTCAG 3 cut(s) 73, 100, 279
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 122, 219
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 4 cut(s) 14, 163, 255, 280
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 81, 87, 287
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 355, 395
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 90, 264
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 123
BstPAI GACNNNNGTC 2 cut(s) 138, 256
BstSCI CCNGG 1 cut(s) 121
BstUI CGCG 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 355, 395
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 172, 268
Cfr42I CCGCGG 1 cut(s) 222
CpoI CGGWCCG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 276
CspI CGGWCCG 1 cut(s) 268
CviJI RGCY 3 cut(s) 39, 91, 291
CviKI_1 RGCY 3 cut(s) 39, 91, 291
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 3 cut(s) 81, 87, 287
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 172, 268
Eco53kI GAGCTC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 293
FaiI YATR 1 cut(s) 10
FaqI GGGAC 2 cut(s) 91, 158
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HapII CCGG 2 cut(s) 266, 271
HinfI GANTC 2 cut(s) 53, 83
HpaII CCGG 2 cut(s) 266, 271
HphI GGTGA 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 190, 204
Hpy188III TCNNGA 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 81, 111
HpyCH4III ACNGT 4 cut(s) 14, 163, 255, 280
HpyCH4V TGCA 3 cut(s) 8, 166, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 81, 87, 287
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 44, 358
LpnPI CCDG 9 cut(s) 60, 108, 135, 144, 279, 284, 299, 343, 379
LweI GCATC 3 cut(s) 205, 340, 380
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 249
MboI GATC 1 cut(s) 190
MboII GAAGA 6 cut(s) 87, 96, 99, 108, 191, 298
MhlI GDGCHC 1 cut(s) 293
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 3 cut(s) 153, 156, 273
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 266, 271
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PshAI GACNNNNGTC 2 cut(s) 138, 256
Psp124BI GAGCTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 2 cut(s) 172, 268
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
Rsr2I CGGWCCG 1 cut(s) 268
RsrII CGGWCCG 1 cut(s) 268
SacI GAGCTC 1 cut(s) 293
SacII CCGCGG 1 cut(s) 222
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 172, 268
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 293
SetI ASST 5 cut(s) 41, 93, 124, 293, 301
SfaNI GCATC 3 cut(s) 205, 340, 380
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 2 cut(s) 172, 268
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SsiI CCGC 3 cut(s) 219, 221, 249
SstI GAGCTC 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 4 cut(s) 14, 163, 255, 280
TaqI TCGA 2 cut(s) 193, 228
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 172, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.