pycom10g24510

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012982
Physical Location & Seq
Forward (+)
26353914 .. 26354919
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGGTTCTCCTGCAGTGTTTGTGCAGCTCTCAGTCCTCCTACTGAGCTGCTTCACTGCCTTCGCTCACTCTCCGGTTCACCCACCAGCCCACTCTCCGGTTCACCCACCAGCCCACTCTCCGGTTCACCCACCAAACCCCCACCACCACCACCACGGCCACCCACCGGCCCACTCTCCCACCCACGTTCCGGTTCAGCCTCCGAGCCACCCGCCAACCCACCATGCACCACCGCCTCACCCTCCGGCTCACAGCCCGGTCCACCCACCGGTTCACCCACCTATGTACCCACCTAAGAAACCTTTCCCAAGGAGCTTTGTAGCGGTTCAAGGCGTCGTTTACTGCAAGTCTTGCAACTACTCCGGCGTCGACACCCTTAACGGCGCCAAGCCAGTTCTTGGTGCTACAGTAAAGCTCCAGTGTAACAACACAAAGTACCCATTGGTTGTGAAAAAAACCACGGATAAGAATGGCTACTTTTTTATCACGGCACCAAAGACCGTCACCACCTTTGGAGCTCACAAGTGCAAGGTGTCGCTCGTCTCAGCACCCTCCACCGCCTGCTCCAAGCCGTCCGATCTGCATGGTGGACTGAGCGGTGCACTCCTGAGGCCTGTGAAGCCATTTGTCTCCCAGAAGCTCCCATTCCTTCTCTACAATGTCGGTCCATTTGCCTTCGAGCCAAAATGTCCTCGTTAA

Protein Analysis

233

Amino Acids

24.87

Weight (kDa)

9.76

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 109 - 200 1.5e-24 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34700
fragaria_vesca FvH4_3g09040
malus_domestica MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica Prupe.4G048800_v2.0.a1
pyrus_communis pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis RchiOBHm_Chr5g0008631
rosa_laevigata RLG00000031588
rosa_multiflora Rmu_sc0001665.1_g000026
rosa_roxburghii Rroxscaffold_1G00067920
rosa_rugosa Rorug04G0437500
rosa_samantha Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana Rw5G006290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 383, 490
AccB7I CCANNNNNTGG 1 cut(s) 398
AccBSI CCGCTC 1 cut(s) 597
AccI GTMKAC 1 cut(s) 369
AciI CCGC 5 cut(s) 212, 233, 323, 558, 597
AcoI YGGCCR 1 cut(s) 157
AcyI GRCGYC 3 cut(s) 333, 366, 384
AfaI GTAC 2 cut(s) 287, 437
AfiI CCNNNNNNNGG 6 cut(s) 97, 121, 166, 190, 268, 398
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 1 cut(s) 329
AluBI AGCT 6 cut(s) 28, 48, 315, 415, 518, 640
AluI AGCT 6 cut(s) 28, 48, 315, 415, 518, 640
Alw21I GWGCWC 2 cut(s) 520, 604
Alw26I GTCTC 2 cut(s) 547, 634
Alw44I GTGCAC 1 cut(s) 600
AoxI GGCC 3 cut(s) 157, 168, 611
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 2 cut(s) 25, 48
AsiGI ACCGGT 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 3 cut(s) 169, 259, 665
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 6 cut(s) 71, 95, 119, 230, 266, 496
AvaII GGWCC 2 cut(s) 259, 665
AxyI CCTNAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 604
BaeI ACNNNNGTAYC 2 cut(s) 269, 302
BanI GGYRCC 2 cut(s) 383, 490
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 2 cut(s) 520, 604
BbvI GCAGC 2 cut(s) 35, 37
BceAI ACGGC 4 cut(s) 172, 397, 504, 556
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 547, 634
BfmI CTRYAG 2 cut(s) 12, 405
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 2 cut(s) 26, 49
BlsI GCNGC 2 cut(s) 27, 50
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 2 cut(s) 259, 665
BmgT120I GGNCC 3 cut(s) 169, 259, 665
BmiI GGNNCC 2 cut(s) 385, 492
BmrFI CCNGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 257
BsaHI GRCGYC 3 cut(s) 333, 366, 384
BsaJI CCNNGG 3 cut(s) 154, 308, 459
BsaWI WCCGGW 5 cut(s) 73, 97, 121, 190, 268
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 121, 166, 190, 268, 398
Bse118I RCCGGY 2 cut(s) 166, 268
Bse1I ACTGG 2 cut(s) 392, 418
Bse21I CCTNAGG 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 154, 308, 459
BseLI CCNNNNNNNGG 6 cut(s) 97, 121, 166, 190, 268, 398
BseMII CTCAG 5 cut(s) 35, 45, 558, 584, 599
BseNI ACTGG 2 cut(s) 392, 418
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 35, 37
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 3 cut(s) 159, 170, 613
BshNI GGYRCC 2 cut(s) 383, 490
BshTI ACCGGT 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 520, 604
BsiSI CCGG 9 cut(s) 74, 98, 122, 167, 191, 245, 257, 269, 363
BslI CCNNNNNNNGG 6 cut(s) 97, 121, 166, 190, 268, 398
BsmAI GTCTC 2 cut(s) 547, 634
BsmBI CGTCTC 1 cut(s) 547
BsnI GGCC 3 cut(s) 159, 170, 613
Bsp1286I GDGCHC 2 cut(s) 520, 604
Bsp143I GATC 1 cut(s) 577
BspACI CCGC 5 cut(s) 212, 233, 323, 558, 597
BspANI GGCC 3 cut(s) 159, 170, 613
BspCNI CTCAG 5 cut(s) 36, 44, 557, 585, 600
BspLI GGNNCC 2 cut(s) 385, 492
BspMAI CTGCAG 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 383, 490
BsrBI CCGCTC 1 cut(s) 597
BsrFI RCCGGY 2 cut(s) 166, 268
BsrI ACTGG 2 cut(s) 392, 418
BssAI RCCGGY 2 cut(s) 166, 268
BssECI CCNNGG 3 cut(s) 154, 308, 459
BssMI GATC 1 cut(s) 577
BssNI GRCGYC 3 cut(s) 333, 366, 384
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 409, 502
BstACI GRCGYC 3 cut(s) 333, 366, 384
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 6 cut(s) 31, 44, 294, 544, 593, 608
BstDSI CCRYGG 2 cut(s) 154, 459
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 1 cut(s) 580
BstMAI GTCTC 2 cut(s) 547, 634
BstMBI GATC 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 351, 619
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 2 cut(s) 12, 405
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 35, 37
Bsu36I CCTNAGG 1 cut(s) 608
BsuRI GGCC 3 cut(s) 159, 170, 613
BtgI CCRYGG 2 cut(s) 154, 459
BtsI GCAGTG 2 cut(s) 21, 54
BtsIMutI CAGTG 3 cut(s) 21, 54, 425
Cac8I GCNNGC 1 cut(s) 562
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 2 cut(s) 166, 268
Cfr13I GGNCC 3 cut(s) 169, 259, 665
CseI GACGC 2 cut(s) 322, 355
Csp6I GTAC 2 cut(s) 286, 436
CspAI ACCGGT 1 cut(s) 268
CviAII CATG 2 cut(s) 224, 584
CviQI GTAC 2 cut(s) 286, 436
DdeI CTNAG 6 cut(s) 31, 44, 294, 544, 593, 608
DinI GGCGCC 1 cut(s) 385
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 259, 665
Eco53kI GAGCTC 1 cut(s) 518
Eco81I CCTNAGG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 520
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 2 cut(s) 227, 587
FaiI YATR 3 cut(s) 225, 284, 585
FatI CATG 2 cut(s) 223, 583
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 26, 49
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 26, 49
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 26, 49
GsuI CTGGAG 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 3 cut(s) 159, 170, 613
HapII CCGG 9 cut(s) 74, 98, 122, 167, 191, 245, 257, 269, 363
HgaI GACGC 2 cut(s) 322, 355
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 3 cut(s) 333, 366, 384
Hin1II CATG 2 cut(s) 227, 587
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 9 cut(s) 74, 98, 122, 167, 191, 245, 257, 269, 363
HphI GGTGA 6 cut(s) 71, 95, 119, 230, 266, 496
Hpy166II GTNNAC 9 cut(s) 79, 103, 127, 262, 274, 340, 370, 590, 602
Hpy188I TCNGA 2 cut(s) 204, 577
Hpy188III TCNNGA 1 cut(s) 607
Hpy8I GTNNAC 9 cut(s) 79, 103, 127, 262, 274, 340, 370, 590, 602
Hpy99I CGWCG 2 cut(s) 338, 371
HpyAV CCTTC 3 cut(s) 70, 659, 685
HpyCH4III ACNGT 2 cut(s) 409, 502
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 8 cut(s) 14, 25, 227, 345, 354, 528, 583, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 351, 619
HpyF3I CTNAG 6 cut(s) 31, 44, 294, 544, 593, 608
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 3 cut(s) 333, 366, 384
Hsp92II CATG 2 cut(s) 227, 587
HspAI GCGC 1 cut(s) 384
KasI GGCGCC 1 cut(s) 383
Kzo9I GATC 1 cut(s) 577
LmnI GCTCC 5 cut(s) 312, 420, 515, 569, 645
Lsp1109I GCAGC 2 cut(s) 35, 37
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 422, 502
MalI GATC 1 cut(s) 579
MbiI CCGCTC 1 cut(s) 597
MboI GATC 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 520, 604
Mly113I GGCGCC 1 cut(s) 384
MnlI CCTC 6 cut(s) 47, 210, 246, 252, 562, 603
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 378, 697
MspI CCGG 9 cut(s) 74, 98, 122, 167, 191, 245, 257, 269, 363
MspR9I CCNGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 351, 619
NarI GGCGCC 1 cut(s) 384
NciI CCSGG 1 cut(s) 257
NdeII GATC 1 cut(s) 577
NlaIII CATG 2 cut(s) 227, 587
NlaIV GGNNCC 2 cut(s) 385, 492
NmuCI GTSAC 1 cut(s) 502
PceI AGGCCT 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 2 cut(s) 27, 50
PluTI GGCGCC 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 520
PspN4I GGNNCC 2 cut(s) 385, 492
PspPI GGNCC 3 cut(s) 169, 259, 665
PstI CTGCAG 1 cut(s) 16
RsaI GTAC 2 cut(s) 287, 437
RsaNI GTAC 2 cut(s) 286, 436
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 378, 697
SatI GCNGC 2 cut(s) 26, 49
Sau3AI GATC 1 cut(s) 577
Sau96I GGNCC 3 cut(s) 169, 259, 665
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 2 cut(s) 520, 604
SfcI CTRYAG 2 cut(s) 12, 405
SfoI GGCGCC 1 cut(s) 385
SinI GGWCC 2 cut(s) 259, 665
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 5 cut(s) 212, 233, 323, 558, 597
SspDI GGCGCC 1 cut(s) 383
SstI GAGCTC 1 cut(s) 520
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 409, 502
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 369, 678
TaqII GACCGA 1 cut(s) 653
Tru1I TTAA 2 cut(s) 378, 697
Tru9I TTAA 2 cut(s) 378, 697
TscAI CASTG 3 cut(s) 21, 61, 425
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 2 cut(s) 25, 48
Tsp45I GTSAC 1 cut(s) 502
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 21, 61, 425
Van91I CCANNNNNTGG 1 cut(s) 398
VneI GTGCAC 1 cut(s) 600
VpaK11BI GGWCC 2 cut(s) 259, 665
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.