pycom10g25800
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015569
Physical Location & Seq
Reverse (-)
27309210 .. 27310254
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
ATGGCGAAAAGGACTCAGCGGTGTGAGAAGACGGTAGCTGTGAAGAAAGGTCCATGGAGTCCTGAGGAGGATCACAAGTTGGTAGCTTACATTCAAAGATATGGAATTTGGAATTGGAGTCAGATGCCTAAACCAGCTGGTCTGGCCAGGTCCGGGAAGAGTTGTAGACTTCGTTGGGTGAATTACTTAAGGCCGGATATTAAGCGTGGGAACTTCAGCAAAGACGAAGAGGAAACCATACTTGAGTTGCATCAAGCAATAGGAAACCGATGGTCTGCTATTGCAGCAAGGCTTCCCGGAAGAACGGACAATGAGATTAAGAATTACTGGCACACCCACATGAAAAAACGCTTCAAGGCGGCGATTGAATCAGTACACGAAGAAGCAAAAGGGTCCGGTGACAAAGAAGCCAGCAAGAACAAGTTATCTGAAGCTGGACAACTCTTTCTTGTTGATGAAGCTACGAAGGTAACATCATTAAAGTTGGAGGCAACTTGTTCAGCTTCATCGAGCGTATTCTTTCCCGTTTGGGAAGTCGACGATCGAAAAGGCCAGATTGCAGAGCAAAGTGTTTGTGCATCTGATGTCACATTTGGTGAGCTTCAAAGTTTGGATTCTCAGGTGTGGCAGCAAGAGCCTATATTTCCATGTGATTCCTACATTAATCATGTCACCAGTGATTACTGGGTCAGTTTAATCGATAAAACAGGATGA

Protein Analysis

238

Amino Acids

26.97

Weight (kDa)

8.2

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 63 2.2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 19 - 78 8.3e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 113 4.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 116 2.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015569)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03680
malus_domestica MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica Prupe.4G034000_v2.0.a1
pyrus_communis pycom05g30170 pycom10g25800
rosa_chinensis RchiOBHm_Chr5g0005721
rosa_laevigata RLG00000031321
rosa_multiflora Rmu_co8433021.1_g000001
rosa_roxburghii Rroxscaffold_1G00070120
rosa_rugosa Rorug04G0417600
rosa_samantha Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana Rw5G004540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 166, 537
AciI CCGC 2 cut(s) 19, 359
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 2 cut(s) 199, 450
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 187
AgsI TTSAA 4 cut(s) 95, 355, 368, 605
AjnI CCWGG 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 7 cut(s) 38, 86, 137, 434, 461, 503, 601
AluI AGCT 7 cut(s) 38, 86, 137, 434, 461, 503, 601
AlwI GGATC 1 cut(s) 78
AoxI GGCC 3 cut(s) 144, 191, 550
ApeKI GCWGC 2 cut(s) 284, 628
ApoI RAATTY 1 cut(s) 105
AseI ATTAAT 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 50, 150, 393
AsuC2I CCSGG 2 cut(s) 154, 297
AsuHPI GGTGA 4 cut(s) 190, 410, 608, 664
AvaII GGWCC 3 cut(s) 50, 150, 393
AxyI CCTNAGG 1 cut(s) 63
BalI TGGCCA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 296, 640
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 148
BcnI CCSGG 2 cut(s) 154, 297
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 3 cut(s) 285, 360, 629
BlsI GCNGC 3 cut(s) 286, 361, 630
Bme1390I CCNGG 3 cut(s) 148, 154, 297
Bme18I GGWCC 3 cut(s) 50, 150, 393
BmgT120I GGNCC 3 cut(s) 50, 150, 393
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 3 cut(s) 148, 154, 297
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 3 cut(s) 114, 259, 587
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 2 cut(s) 154, 297
Bsa29I ATCGAT 1 cut(s) 699
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 3 cut(s) 332, 675, 689
Bse21I CCTNAGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 3 cut(s) 29, 54, 632
BseNI ACTGG 3 cut(s) 332, 675, 689
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 296, 640
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 3 cut(s) 146, 193, 552
BshVI ATCGAT 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 544
BsiSI CCGG 4 cut(s) 153, 194, 297, 396
BslI CCNNNNNNNGG 1 cut(s) 153
BsnI GGCC 3 cut(s) 146, 193, 552
Bsp143I GATC 2 cut(s) 70, 541
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 2 cut(s) 19, 359
BspANI GGCC 3 cut(s) 146, 193, 552
BspCNI CTCAG 3 cut(s) 28, 55, 631
BspDI ATCGAT 1 cut(s) 699
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 187
BsrI ACTGG 3 cut(s) 332, 675, 689
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 70, 541
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 2 cut(s) 152, 222
BstAFI CTTAAG 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 15, 63, 618
BstDSI CCRYGG 1 cut(s) 53
BstKTI GATC 2 cut(s) 73, 544
BstMBI GATC 2 cut(s) 70, 541
BstMCI CGRYCG 1 cut(s) 544
BstMWI GCNNNNNNNGC 3 cut(s) 143, 284, 634
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 146, 152, 295
BstV1I GCAGC 2 cut(s) 296, 640
BstV2I GAAGAC 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 146, 193, 552
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 682
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 3 cut(s) 50, 150, 393
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 1 cut(s) 374
CviAII CATG 4 cut(s) 54, 340, 648, 668
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 3 cut(s) 15, 63, 618
DpnI GATC 2 cut(s) 72, 543
DpnII GATC 2 cut(s) 70, 541
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 152, 222
EarI CTCTTC 2 cut(s) 152, 222
Eco130I CCWWGG 1 cut(s) 53
Eco47I GGWCC 3 cut(s) 50, 150, 393
Eco57I CTGAAG 2 cut(s) 199, 450
Eco81I CCTNAGG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 57, 343, 651, 671
FaiI YATR 7 cut(s) 55, 102, 239, 341, 641, 649, 669
FatI CATG 4 cut(s) 53, 339, 647, 667
FblI GTMKAC 2 cut(s) 166, 537
Fnu4HI GCNGC 3 cut(s) 285, 360, 629
Fsp4HI GCNGC 3 cut(s) 285, 360, 629
GluI GCNGC 3 cut(s) 285, 360, 629
HaeIII GGCC 3 cut(s) 146, 193, 552
HapII CCGG 4 cut(s) 153, 194, 297, 396
Hin1II CATG 4 cut(s) 57, 343, 651, 671
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 6 cut(s) 13, 58, 118, 368, 614, 653
HpaII CCGG 4 cut(s) 153, 194, 297, 396
HphI GGTGA 4 cut(s) 190, 410, 608, 664
Hpy166II GTNNAC 3 cut(s) 167, 376, 538
Hpy188I TCNGA 3 cut(s) 123, 430, 583
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 3 cut(s) 167, 376, 538
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 250, 284, 560, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 284, 634
HpyF3I CTNAG 3 cut(s) 15, 63, 618
Hsp92II CATG 4 cut(s) 57, 343, 651, 671
Kzo9I GATC 2 cut(s) 70, 541
Lsp1109I GCAGC 2 cut(s) 296, 640
LweI GCATC 3 cut(s) 114, 259, 587
MaeIII GTNAC 4 cut(s) 398, 469, 586, 670
MalI GATC 2 cut(s) 72, 543
MboI GATC 2 cut(s) 70, 541
MboII GAAGA 6 cut(s) 40, 55, 169, 239, 312, 392
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 4 cut(s) 105, 112, 181, 322
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 3 cut(s) 7, 67, 127
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 4 cut(s) 58, 61, 223, 481
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 6 cut(s) 188, 201, 318, 479, 663, 695
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 2 cut(s) 19, 137
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 4 cut(s) 153, 194, 297, 396
MspR9I CCNGG 3 cut(s) 148, 154, 297
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 143, 284, 634
NciI CCSGG 2 cut(s) 154, 297
NcoI CCATGG 1 cut(s) 53
NdeII GATC 2 cut(s) 70, 541
NlaIII CATG 4 cut(s) 57, 343, 651, 671
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 398, 586, 670
PfeI GAWTC 3 cut(s) 368, 614, 653
PfoI TCCNGGA 2 cut(s) 152, 295
PkrI GCNGC 3 cut(s) 286, 361, 630
Ple19I CGATCG 1 cut(s) 544
PleI GAGTC 3 cut(s) 7, 66, 126
PpsI GAGTC 3 cut(s) 7, 66, 126
PshBI ATTAAT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 50, 150, 393
PvuI CGATCG 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 338
SalI GTCGAC 1 cut(s) 536
SaqAI TTAA 6 cut(s) 188, 201, 318, 479, 663, 695
SatI GCNGC 3 cut(s) 285, 360, 629
Sau3AI GATC 2 cut(s) 70, 541
Sau96I GGNCC 3 cut(s) 50, 150, 393
SchI GAGTC 3 cut(s) 7, 67, 127
ScrFI CCNGG 3 cut(s) 148, 154, 297
SfaNI GCATC 3 cut(s) 114, 259, 587
SinI GGWCC 3 cut(s) 50, 150, 393
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 187, 242
SmoI CTYRAG 2 cut(s) 187, 242
Sse9I AATT 4 cut(s) 105, 112, 181, 322
SsiI CCGC 2 cut(s) 19, 359
StyD4I CCNGG 3 cut(s) 146, 152, 295
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 4 cut(s) 509, 537, 544, 699
TasI AATT 4 cut(s) 105, 112, 181, 322
TatI WGTACW 1 cut(s) 373
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 3 cut(s) 368, 614, 653
Tru1I TTAA 6 cut(s) 188, 201, 318, 479, 663, 695
Tru9I TTAA 6 cut(s) 188, 201, 318, 479, 663, 695
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 3 cut(s) 398, 586, 670
TseI GCWGC 2 cut(s) 284, 628
Tsp45I GTSAC 3 cut(s) 398, 586, 670
TspDTI ATGAA 3 cut(s) 356, 471, 495
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 682
Vha464I CTTAAG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 50, 150, 393
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 1 cut(s) 105
XmiI GTMKAC 2 cut(s) 166, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.