Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004788

Physical Location & Seq

Genomic Coordinates Forward (+)

27910338 .. 27912876

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGGAAAATCCAAAGTTGGATTCTGATTCTGGGGAGGTTTATGGATTAGAAGAGAGAATGGGAACCCAGAAAATATCGGTTTCGGATCATATAAACGGGTTTCATTACACCGCTGATAAATCTGACAGCTTCGTCATCGACATGGAAAGCTTCTCCCATGGTGGCACGGATAAAGATGTCACTGCAAATTCTAGAGTCTCGATGCAGAGAAATCTTTCCCGGAAATGGTCTCAGAGAGGTGGGGAGAAGAAGATAATCTGCAAAGGAGATTCAAACGACAAAGAACTTTCATCTACAACATCCTCACCCGTCGGGTCTAGCACGCCTGAAAAGTCCCCACTAGCTGTTGGGACCATAGATCAGTCGAGCAACCCACACGTTCATCATCAGATCACCGTCACCGCGGCCAACATTGGCACCACCACTGAAGGGAGGTGCGTTGTCCGGAGAAATAGTTTCCGGCGCTCTTCCTCGTGGGGCATTGATCCCAAGAGGGTTCTCCTCTTCTTTGCCACCATGTCAAGCGTTGGAACAATCTTACTCATATACTTCACGCTTTCGATTGCCAAGTACAATGCAGACGAGAACAGTCTGGATTGGCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.34

Weight (kDa)

6.59

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21215 AT4G21215
fragaria_vesca	FvH4_3g02690 FvH4_3g02690 FvH4_3g02690
malus_domestica	MD05G1340800.v1.1 MD10G1314300.v1.1
prunus_persica	Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1
pyrus_communis	pycom05g31000 pycom10g26640
rosa_chinensis	RchiOBHm_Chr5g0004031
rosa_laevigata	RLG00000031197
rosa_roxburghii	Rroxscaffold_1G00071680 Rroxscaffold_1G00071950
rosa_rugosa	Rorug04G0409100 Rorug04G0409200 Rorug04G0409200 Rorug04G0409300 Rorug04G0409400 Rorug04G0409400 Rorug04G0409400
rosa_samantha	Rh5AG036800 Rh5BG035900 Rh5CG039500 Rh5DG035400
rosa_wichuraiana	Rw5G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	419
AccII	CGCG	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	4 cut(s)	5, 114, 405, 407
AclWI	GGATC	2 cut(s)	96, 482
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	228, 432
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	132, 153, 347
AluI	AGCT	3 cut(s)	132, 153, 347
Alw26I	GTCTC	2 cut(s)	205, 237
AlwI	GGATC	2 cut(s)	96, 482
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	300, 388, 394
AvaII	GGWCC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	205, 237
BfaI	CTAG	3 cut(s)	195, 321, 344
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	2 cut(s)	408, 605
BlsI	GCNGC	2 cut(s)	409, 606
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	3 cut(s)	67, 355, 421
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	160, 405
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 432
BseAI	TCCGGA	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	160, 405
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	228, 432
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	223, 448, 463
BslFI	GGGAC	2 cut(s)	322, 367
BslI	CCNNNNNNNGG	2 cut(s)	228, 432
BsmAI	GTCTC	2 cut(s)	205, 237
BsmFI	GGGAC	2 cut(s)	322, 367
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	88, 361, 393, 487
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	4 cut(s)	5, 114, 405, 407
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	3 cut(s)	67, 355, 421
BspPI	GGATC	2 cut(s)	96, 482
BspQI	GCTCTTC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	160, 405
BssMI	GATC	4 cut(s)	88, 361, 393, 487
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	400, 593
Bst6I	CTCTTC	3 cut(s)	48, 475, 512
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	2 cut(s)	160, 405
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	4 cut(s)	91, 364, 396, 490
BstMAI	GTCTC	2 cut(s)	205, 237
BstMBI	GATC	4 cut(s)	88, 361, 393, 487
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	2 cut(s)	160, 405
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 426
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	354
Cfr42I	CCGCGG	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	145, 161, 520
CviJI	RGCY	4 cut(s)	132, 153, 347, 410
CviKI_1	RGCY	4 cut(s)	132, 153, 347, 410
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	4 cut(s)	90, 363, 395, 489
DpnII	GATC	4 cut(s)	88, 361, 393, 487
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	3 cut(s)	48, 475, 512
EarI	CTCTTC	3 cut(s)	48, 475, 512
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	148, 164, 523
FaiI	YATR	9 cut(s)	45, 93, 95, 146, 162, 359, 521, 548, 550
FaqI	GGGAC	2 cut(s)	322, 367
FatI	CATG	3 cut(s)	144, 160, 519
Fnu4HI	GCNGC	2 cut(s)	408, 605
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	408, 605
FspBI	CTAG	3 cut(s)	195, 321, 344
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	2 cut(s)	408, 605
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	223, 448, 463
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	148, 164, 523
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	4 cut(s)	23, 29, 198, 272
HpaII	CCGG	3 cut(s)	223, 448, 463
HphI	GGTGA	3 cut(s)	300, 388, 394
Hpy188I	TCNGA	5 cut(s)	28, 88, 127, 237, 393
Hpy188III	TCNNGA	4 cut(s)	195, 202, 448, 596
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	400, 593
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	188, 208, 264, 581
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	148, 164, 523
HspAI	GCGC	1 cut(s)	466
Kpn2I	TCCGGA	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	408
Kzo9I	GATC	4 cut(s)	88, 361, 393, 487
LguI	GCTCTTC	1 cut(s)	475
LpnPI	CCDG	7 cut(s)	18, 83, 236, 342, 461, 476, 581
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	3 cut(s)	195, 321, 344
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	181, 400
MalI	GATC	4 cut(s)	90, 363, 395, 489
MboI	GATC	4 cut(s)	88, 361, 393, 487
MboII	GAAGA	5 cut(s)	65, 262, 265, 462, 499
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	31, 233, 316, 429, 484, 489, 515
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	116, 407
MspI	CCGG	3 cut(s)	223, 448, 463
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	407
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	88, 361, 393, 487
NlaIII	CATG	3 cut(s)	148, 164, 523
NlaIV	GGNNCC	3 cut(s)	67, 355, 421
NmuCI	GTSAC	2 cut(s)	181, 400
PciSI	GCTCTTC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	23, 29, 272
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	409, 606
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	67, 355, 421
PspPI	GGNCC	1 cut(s)	354
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	475
SatI	GCNGC	2 cut(s)	408, 605
Sau3AI	GATC	4 cut(s)	88, 361, 393, 487
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	7 cut(s)	42, 134, 155, 244, 349, 384, 440
SfaNI	GCATC	1 cut(s)	195
Sfr303I	CCGCGG	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	4 cut(s)	5, 114, 405, 407
SspMI	CTAG	3 cut(s)	195, 321, 344
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	400, 593
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	141, 203, 368, 563
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	3 cut(s)	23, 29, 272
TscAI	CASTG	2 cut(s)	190, 433
TseFI	GTSAC	2 cut(s)	181, 400
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	181, 400
TspDTI	ATGAA	3 cut(s)	95, 282, 374
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	190, 433
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	3 cut(s)	195, 321, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.