pycom10g27430

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011859
Physical Location & Seq
Forward (+)
28387065 .. 28388923
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGGACCTAACCCAACAGAAAATTGATTACACCCAATTATTCCTCTCAAAGTTGGAAATTCTGATGGGGTCGATTGCAAAGAAGGGGTTGCAGCAGTACTTGCTTCAGCTTCAGCATCATCCGCTCAGAACCAAGGCAATTACAGCGGGGGTTTTGTCAGCGATCAGTGACATAGTGTCGCAGAAGCTCACCGGCATTCAGAAACTTCAGATAAGGCGGCTCCTTCTCAAAGTGCTTCTAGGAGCTGTTTATCTTGGACCATTTGGGCATTTCCTGCATACCATACTAGATAAGATTTTCAAGGGGAAGAAGGATTCAAAAACAGTGCTGGTGGAACAGCTGACGGCTTCTCCCTGGAATAACTTGGTTTTCATGCTTTACTATGGGTTGGTTGTGGAGGGAAGACCTTGGATGCAAGTGAAAAGTAAAATCAAGACGGACTACCCAAAGGTTCAATACACATCATGGACGTTCTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTGCCACTGCACCTCCGTGTCATCTTCCACAGCTTGGTCGCTTTTGTCTGGGGAATTTTCCTAAACTTACAGGCAAGATCTGTGGCATTACCAAAAGCCAAGTGA

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

10.09

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 131 - 191 2.4e-21 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 124
AciI CCGC 3 cut(s) 122, 146, 217
AcsI RAATTY 2 cut(s) 57, 561
AcuI CTGAAG 3 cut(s) 89, 95, 191
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 485, 541
AgsI TTSAA 3 cut(s) 301, 318, 455
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 353
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 5 cut(s) 109, 187, 245, 340, 540
AluI AGCT 5 cut(s) 109, 187, 245, 340, 540
AoxI GGCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 57, 561
AspS9I GGNCC 2 cut(s) 4, 257
AsuHPI GGTGA 2 cut(s) 181, 491
AvaII GGWCC 2 cut(s) 4, 257
BbsI GAAGAC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 355
BfaI CTAG 2 cut(s) 239, 287
BglII AGATCT 1 cut(s) 584
BisI GCNGC 2 cut(s) 92, 218
BlsI GCNGC 2 cut(s) 93, 219
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 2 cut(s) 4, 257
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 4, 257
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 124, 402
BpiI GAAGAC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 132, 353, 407
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 541
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 132, 353, 407
BseGI GGATG 2 cut(s) 118, 417
BseLI CCNNNNNNNGG 2 cut(s) 485, 541
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 502
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 500
BshFI GGCC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 485, 541
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 478
Bsp143I GATC 2 cut(s) 162, 584
BspACI CCGC 3 cut(s) 122, 146, 217
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 132, 353, 407
BssMI GATC 2 cut(s) 162, 584
BssT1I CCWWGG 2 cut(s) 132, 407
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 325
BstAPI GCANNNNNTGC 2 cut(s) 100, 274
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 118, 417
BstKTI GATC 2 cut(s) 165, 587
BstMBI GATC 2 cut(s) 162, 584
BstMWI GCNNNNNNNGC 4 cut(s) 100, 121, 143, 274
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 1 cut(s) 478
BtsCI GGATG 2 cut(s) 118, 417
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 3 cut(s) 172, 330, 512
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 4, 257
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 2 cut(s) 373, 465
CviJI RGCY 9 cut(s) 109, 187, 220, 245, 340, 347, 478, 540, 605
CviKI_1 RGCY 9 cut(s) 109, 187, 220, 245, 340, 347, 478, 540, 605
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 164, 586
DpnII GATC 2 cut(s) 162, 584
DriI GACNNNNNGTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 132, 407
Eco47I GGWCC 2 cut(s) 4, 257
Eco57I CTGAAG 3 cut(s) 89, 95, 191
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 132, 407
ErhI CCWWGG 2 cut(s) 132, 407
FaeI CATG 2 cut(s) 376, 468
FaiI YATR 7 cut(s) 173, 279, 284, 374, 384, 466, 507
FatI CATG 2 cut(s) 372, 464
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 92, 218
FokI GGATG 2 cut(s) 105, 424
Fsp4HI GCNGC 2 cut(s) 92, 218
FspBI CTAG 2 cut(s) 239, 287
GluI GCNGC 2 cut(s) 92, 218
HaeIII GGCC 1 cut(s) 478
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 376, 468
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 181, 491
Hpy188I TCNGA 4 cut(s) 63, 128, 201, 210
Hpy188III TCNNGA 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 76, 233, 304
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 5 cut(s) 77, 91, 277, 415, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 121, 143, 274
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 376, 468
Kzo9I GATC 2 cut(s) 162, 584
LmnI GCTCC 2 cut(s) 225, 242
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 124, 402
MaeI CTAG 2 cut(s) 239, 287
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 164, 586
MbiI CCGCTC 1 cut(s) 124
MboI GATC 2 cut(s) 162, 584
MboII GAAGA 3 cut(s) 319, 414, 523
MflI RGATCY 1 cut(s) 584
MluCI AATT 5 cut(s) 21, 35, 57, 138, 561
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 53, 391, 530
MslI CAYNNNNRTG 2 cut(s) 504, 522
MspA1I CMGCKG 2 cut(s) 146, 340
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 100, 121, 143, 274
NdeII GATC 2 cut(s) 162, 584
NlaIII CATG 2 cut(s) 376, 468
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 522
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 2 cut(s) 93, 219
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 2 cut(s) 4, 257
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 504, 522
SatI GCNGC 2 cut(s) 92, 218
Sau3AI GATC 2 cut(s) 162, 584
Sau96I GGNCC 2 cut(s) 4, 257
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 355
SfaNI GCATC 2 cut(s) 124, 402
SinI GGWCC 2 cut(s) 4, 257
SmiMI CAYNNNNRTG 2 cut(s) 504, 522
Sse9I AATT 5 cut(s) 21, 35, 57, 138, 561
SsiI CCGC 3 cut(s) 122, 146, 217
SspMI CTAG 2 cut(s) 239, 287
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 2 cut(s) 132, 407
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 71
TasI AATT 5 cut(s) 21, 35, 57, 138, 561
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 314
TscAI CASTG 3 cut(s) 172, 330, 519
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 2 cut(s) 452, 512
TspRI CASTG 3 cut(s) 172, 330, 519
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 2 cut(s) 4, 257
XapI RAATTY 2 cut(s) 57, 561
XspI CTAG 2 cut(s) 239, 287
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.