pycom10g27990

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012095
Physical Location & Seq
Reverse (-)
28777933 .. 28779099
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGGGAGCGGTGAGGTTTCAGAGAGTGGCAGCGGCGTTTGACGAGGTGTCTCGGGTGAGGCTGTGCGAGAGCAGCGGGAGCGAGTACTCCGCGGCCGGGGAGAGTTTTGCGGATTTGTCGAATCTTGTCAAGTCCTTCATCGAGAGAGGGGATTTGGGAGAAGGCGGTGGCGACCGAGACGGCGTACGGAACGATGAAGAATCAGAGGGCGGTGATTGGTCGGATTCGGAGACGAAGAATTCTCTGGAGAGATTGTTTGATGTGAAAGGTGATGATTTGAAGAAGACGATTGCTGATGAGGTGGAAGTTGCTTTGGCGGGCATTGGGGACGACTTGTCCCGGGGGTTCAAAAGGAGGTTGATGACTCACTTGCGCCACAAGGGTTTTGATGCTGGGTTGTCCTTTAGTGGGACGAGTTTGTCGATGTCAACCTCAAAGGAACTCGTTACACAGTGGAACCATTCCTTGTTGGACGGTTCGAAATTGCTCGTCCCACGACGCGTTACACTAATTGCTCGTCCCACGACGCGTTACACATCGCTCCTCGAAGTTTTTCCAAACACATTCGTCGGAGAAGTCGATGAGCTGAAGAAAATCGTGAGGCTAATGTGCACAGCAATAAAAAAATCTATGAAGAGCGTGGACATGCCAATGCCGCCATGGCGGCGGAACGGATACATGCAGACCAAATGGTTTGGATCGATCAAGCGCACAACCAATGCAGTAGCACCATTAGCCGCCGTCAATACGGCATTGGAATCGAACCATGGATTTGGAGGTGTCAAGAAATCAATGAGGCTTGAGGCATTGCCTACGAAGTCTTACTATTGCAGAGATGATTTTGCTAGTAAGGAGGGCTTGAGAGTTGGGCGTTTGACTGCTGCGTTTCAAGGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

300

Amino Acids

32.91

Weight (kDa)

8.87

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 171 - 237 1.2e-27 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 3 cut(s) 92, 501, 529
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 2 cut(s) 86, 186
AfiI CCNNNNNNNGG 2 cut(s) 96, 408
AflIII ACRYGT 2 cut(s) 499, 527
AgsI TTSAA 3 cut(s) 280, 349, 890
AhdI GACNNNNNGTC 2 cut(s) 46, 334
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 3 cut(s) 54, 171, 224
Alw44I GTGCAC 1 cut(s) 610
AlwI GGATC 1 cut(s) 706
Ama87I CYCGRG 2 cut(s) 51, 339
AoxI GGCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 29, 72, 881
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 2 cut(s) 375, 711
AsuC2I CCSGG 3 cut(s) 97, 340, 341
AsuHPI GGTGA 4 cut(s) 22, 67, 224, 281
AsuII TTCGAA 1 cut(s) 479
AvaI CYCGRG 2 cut(s) 51, 339
BaeGI GKGCMC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 41, 84, 868
BceAI ACGGC 3 cut(s) 196, 725, 765
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciVI GTATCC 1 cut(s) 668
BcnI CCSGG 3 cut(s) 97, 340, 341
BcoDI GTCTC 3 cut(s) 54, 171, 224
BfaI CTAG 1 cut(s) 846
BfuI GTATCC 1 cut(s) 668
BglI GCCNNNNNGGC 2 cut(s) 661, 664
BisI GCNGC 8 cut(s) 30, 33, 73, 93, 656, 665, 738, 882
BlsI GCNGC 8 cut(s) 31, 34, 74, 94, 657, 666, 739, 883
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 97, 340, 341
BmeRI GACNNNNNGTC 2 cut(s) 46, 334
BmeT110I CYCGRG 2 cut(s) 51, 339
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 3 cut(s) 97, 340, 341
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 821, 880
BpuMI CCSGG 3 cut(s) 97, 340, 341
Bsa29I ATCGAT 1 cut(s) 701
BsaJI CCNNGG 6 cut(s) 90, 96, 339, 340, 659, 766
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 408
Bse3DI GCAATG 1 cut(s) 806
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 6 cut(s) 90, 96, 339, 340, 659, 766
BseLI CCNNNNNNNGG 2 cut(s) 96, 408
BseMI GCAATG 1 cut(s) 806
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 614
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 41, 84, 868
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 3 cut(s) 92, 501, 529
Bsh1285I CGRYCG 2 cut(s) 96, 175
BshFI GGCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 701
BsiEI CGRYCG 2 cut(s) 96, 175
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 2 cut(s) 51, 339
BsiSI CCGG 2 cut(s) 96, 340
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 5 cut(s) 322, 341, 424, 476, 504
BslI CCNNNNNNNGG 2 cut(s) 96, 408
BsmAI GTCTC 3 cut(s) 54, 171, 224
BsmBI CGTCTC 2 cut(s) 171, 224
BsmFI GGGAC 5 cut(s) 322, 341, 424, 476, 504
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 2 cut(s) 51, 339
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 2 cut(s) 698, 702
Bsp19I CCATGG 2 cut(s) 659, 766
BspANI GGCC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 701
BspFNI CGCG 3 cut(s) 92, 501, 529
BspLI GGNNCC 1 cut(s) 458
BspPI GGATC 1 cut(s) 706
BspQI GCTCTTC 1 cut(s) 629
BspT104I TTCGAA 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 806
BssECI CCNNGG 6 cut(s) 90, 96, 339, 340, 659, 766
BssMI GATC 2 cut(s) 698, 702
BssT1I CCWWGG 2 cut(s) 659, 766
Bst4CI ACNGT 2 cut(s) 453, 476
Bst6I CTCTTC 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 319
BstDSI CCRYGG 3 cut(s) 90, 659, 766
BstFNI CGCG 3 cut(s) 92, 501, 529
BstHHI GCGC 2 cut(s) 375, 711
BstKTI GATC 2 cut(s) 701, 705
BstMAI GTCTC 3 cut(s) 54, 171, 224
BstMBI GATC 2 cut(s) 698, 702
BstMCI CGRYCG 2 cut(s) 96, 175
BstMWI GCNNNNNNNGC 6 cut(s) 72, 78, 655, 661, 664, 734
BstNSI RCATGY 2 cut(s) 649, 682
BstSCI CCNGG 3 cut(s) 95, 338, 339
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 3 cut(s) 92, 501, 529
BstV1I GCAGC 3 cut(s) 41, 84, 868
BstV2I GAAGAC 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 773
BstZI CGGCCG 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 701
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 701
BtgI CCRYGG 3 cut(s) 90, 659, 766
BtgZI GCGATG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 2 cut(s) 375, 711
Cfr42I CCGCGG 1 cut(s) 93
Cfr9I CCCGGG 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 701
CseI GACGC 2 cut(s) 507, 535
Csp6I GTAC 2 cut(s) 85, 185
CviAII CATG 4 cut(s) 646, 660, 679, 767
CviJI RGCY 7 cut(s) 61, 95, 586, 604, 737, 799, 858
CviKI_1 RGCY 7 cut(s) 61, 95, 586, 604, 737, 799, 858
CviQI GTAC 2 cut(s) 85, 185
DpnI GATC 2 cut(s) 700, 704
DpnII GATC 2 cut(s) 698, 702
DrdI GACNNNNNNGTC 1 cut(s) 418
DriI GACNNNNNGTC 2 cut(s) 46, 334
DseDI GACNNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 629
Eam1105I GACNNNNNGTC 2 cut(s) 46, 334
EarI CTCTTC 1 cut(s) 629
EciI GGCGGA 1 cut(s) 682
EclXI CGGCCG 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 659, 766
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 608
Eco88I CYCGRG 2 cut(s) 51, 339
EcoRI GAATTC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 659, 766
ErhI CCWWGG 2 cut(s) 659, 766
Esp3I CGTCTC 2 cut(s) 171, 224
FaeI CATG 4 cut(s) 649, 663, 682, 770
FaiI YATR 5 cut(s) 632, 647, 661, 680, 768
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 5 cut(s) 322, 341, 424, 476, 504
FatI CATG 4 cut(s) 645, 659, 678, 766
FauI CCCGC 2 cut(s) 68, 310
Fnu4HI GCNGC 8 cut(s) 30, 33, 73, 93, 656, 665, 738, 882
Fsp4HI GCNGC 8 cut(s) 30, 33, 73, 93, 656, 665, 738, 882
FspBI CTAG 1 cut(s) 846
GlaI GCGC 2 cut(s) 374, 710
GluI GCNGC 8 cut(s) 30, 33, 73, 93, 656, 665, 738, 882
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 96, 340
HgaI GACGC 2 cut(s) 507, 535
HhaI GCGC 2 cut(s) 375, 711
Hin1II CATG 4 cut(s) 649, 663, 682, 770
Hin6I GCGC 2 cut(s) 373, 709
HinP1I GCGC 2 cut(s) 373, 709
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 5 cut(s) 121, 200, 224, 364, 758
HpaII CCGG 2 cut(s) 96, 340
HphI GGTGA 4 cut(s) 22, 67, 224, 281
Hpy166II GTNNAC 3 cut(s) 429, 612, 643
Hpy188I TCNGA 5 cut(s) 21, 205, 223, 229, 572
Hpy188III TCNNGA 4 cut(s) 142, 245, 598, 784
Hpy8I GTNNAC 3 cut(s) 429, 612, 643
Hpy99I CGWCG 3 cut(s) 501, 529, 572
HpyAV CCTTC 2 cut(s) 145, 155
HpyCH4III ACNGT 2 cut(s) 453, 476
HpyCH4V TGCA 4 cut(s) 612, 682, 722, 831
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 78, 655, 661, 664, 734
Hsp92II CATG 4 cut(s) 649, 663, 682, 770
HspAI GCGC 2 cut(s) 373, 709
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 698, 702
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 3 cut(s) 5, 78, 546
LpnPI CCDG 4 cut(s) 109, 230, 353, 378
Lsp1109I GCAGC 3 cut(s) 41, 84, 868
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 846
MaeIII GTNAC 3 cut(s) 445, 502, 530
MalI GATC 2 cut(s) 700, 704
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 698, 702
MboII GAAGA 6 cut(s) 209, 247, 292, 295, 601, 646
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 3 cut(s) 238, 482, 510
MluI ACGCGT 2 cut(s) 499, 527
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 3 cut(s) 201, 450, 550
MroXI GAANNNNTTC 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 3 cut(s) 32, 75, 92
MspI CCGG 2 cut(s) 96, 340
MspR9I CCNGG 3 cut(s) 97, 340, 341
MvnI CGCG 3 cut(s) 92, 501, 529
MwoI GCNNNNNNNGC 6 cut(s) 72, 78, 655, 661, 664, 734
NciI CCSGG 3 cut(s) 97, 340, 341
NcoI CCATGG 2 cut(s) 659, 766
NdeII GATC 2 cut(s) 698, 702
NlaIII CATG 4 cut(s) 649, 663, 682, 770
NlaIV GGNNCC 1 cut(s) 458
NspI RCATGY 2 cut(s) 649, 682
NspV TTCGAA 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 2 cut(s) 419, 576
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 4 cut(s) 121, 200, 224, 758
Pfl23II CGTACG 1 cut(s) 184
PkrI GCNGC 8 cut(s) 31, 34, 74, 94, 657, 666, 739, 883
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 392
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 458
RsaI GTAC 2 cut(s) 86, 186
RsaNI GTAC 2 cut(s) 85, 185
RseI CAYNNNNRTG 1 cut(s) 650
SacII CCGCGG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 629
SatI GCNGC 8 cut(s) 30, 33, 73, 93, 656, 665, 738, 882
Sau3AI GATC 2 cut(s) 698, 702
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 3 cut(s) 97, 340, 341
SduI GDGCHC 1 cut(s) 614
SetI ASST 8 cut(s) 17, 48, 271, 303, 359, 434, 588, 781
SfaNI GCATC 1 cut(s) 379
Sfr303I CCGCGG 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 93
SmaI CCCGGG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 800, 859
SmoI CTYRAG 2 cut(s) 800, 859
Sse9I AATT 3 cut(s) 238, 482, 510
SspMI CTAG 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 95, 338, 339
StyI CCWWGG 2 cut(s) 659, 766
TaaI ACNGT 2 cut(s) 453, 476
TaqI TCGA 8 cut(s) 119, 141, 422, 479, 546, 579, 701, 761
TaqII GACCGA 1 cut(s) 189
TasI AATT 3 cut(s) 238, 482, 510
TatI WGTACW 1 cut(s) 84
TauI GCSGC 5 cut(s) 35, 95, 658, 667, 740
TfiI GAWTC 4 cut(s) 121, 200, 224, 758
TscAI CASTG 1 cut(s) 458
TseI GCWGC 3 cut(s) 29, 72, 881
TspDTI ATGAA 3 cut(s) 127, 210, 647
TspGWI ACGGA 2 cut(s) 202, 687
TspMI CCCGGG 1 cut(s) 339
TspRI CASTG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 610
XapI RAATTY 1 cut(s) 238
XceI RCATGY 2 cut(s) 649, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XmaI CCCGGG 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 846
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.