pycom10g28000

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012095
Physical Location & Seq
Reverse (-)
28780487 .. 28781652
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGGGAGCGGTGAGGTTTCAGAGAGTGGCGGCGGCGTTTGACGAGGTGTCTCGGGTGAGGCTGTGCGAGAGCAGCGGGAGCGAGTACTCCGCGGCCGGGGAGAGTTTTGCGGATTTGTCGGATCTTGTCAAGTCCTTCATCGAGAGAGGGGATTTGGGAGAAGGCGGTGGCGACCGAGACGGCGTACGGAACGATGAAGAATCAGAGGGCGGTGATTGGTCGGATTCGGAGACGAAGAATTCTCTGGAGAGATTGTTTGATGTGAAAGGTGATGATTTGAAGAAGACGATTGCTGATGAGGTGAAAGTTGCTTTGGCGGGCATTGGGGACGACAAGTCGTCCCGGGGGTTCAAAAGGAGGTTGATGACTCACTTGCGCTACAAGGGCCTTTGCAAATCAAAGTGGGTGAAATCGAGCCAGTTTCCAGCAGGGGACTACGAGTTTGTCGATGTCAACCTCGAGGGAACTCGTTACGTAGTGGAACCATTCCTTGTTGGACAGTTCGAAATTGCTCGTCCCACGACACGTTACACATCGCTCCTCGAAGTTTTTCCAAACACATTCGTCGGAGAAGTCGATGAGCTGAAGAAAATCGTGAGGCTAATGTGCACGGCAATAAAAAAATCTATGAAGAGCGTGGATATGCCAATGCCGCCATGGCGGCGGAACGGATACATGCAGGCTAAATGGTTTGGATCGTACAAGCGCACCACCAATGCAGTAGCACCATTAGCCGCCGCCAATACGGCATTGGAATCGAACCATGGATTTGGAGGTGTCAAGAAATCAATGAGGCTTGAGGCATTGCCTACGAAGTCTTACTATTGCAGAGATGATTTTGCTAGCAAGGATGGCTTGAGAGTTGGGCGTTTGACTGCTGCGTTTCAAGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

299

Amino Acids

33.12

Weight (kDa)

8.21

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 40 - 236 1.4e-52 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 1 cut(s) 92
AclWI GGATC 2 cut(s) 129, 703
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 3 cut(s) 86, 186, 701
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 280, 352, 887
AhdI GACNNNNNGTC 3 cut(s) 46, 334, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 1 cut(s) 583
AluI AGCT 1 cut(s) 583
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 3 cut(s) 54, 171, 224
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 129, 703
Ama87I CYCGRG 3 cut(s) 51, 342, 458
AoxI GGCC 2 cut(s) 93, 385
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 72, 878
ApoI RAATTY 1 cut(s) 238
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 2 cut(s) 378, 708
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 3 cut(s) 97, 343, 344
AsuHPI GGTGA 6 cut(s) 22, 67, 224, 281, 313, 418
AsuII TTCGAA 1 cut(s) 504
AsuNHI GCTAGC 1 cut(s) 842
AvaI CYCGRG 3 cut(s) 51, 342, 458
BaeGI GKGCMC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 2 cut(s) 84, 865
BccI CCATC 1 cut(s) 845
BceAI ACGGC 3 cut(s) 196, 627, 762
BcgI CGANNNNNNTGC 2 cut(s) 738, 772
BciVI GTATCC 1 cut(s) 665
BcnI CCSGG 3 cut(s) 97, 343, 344
BcoDI GTCTC 3 cut(s) 54, 171, 224
BfaI CTAG 1 cut(s) 843
BfuI GTATCC 1 cut(s) 665
BglI GCCNNNNNGGC 3 cut(s) 658, 661, 746
BisI GCNGC 9 cut(s) 30, 33, 73, 93, 653, 662, 735, 738, 879
BlsI GCNGC 9 cut(s) 31, 34, 74, 94, 654, 663, 736, 739, 880
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 97, 343, 344
BmeRI GACNNNNNGTC 3 cut(s) 46, 334, 337
BmeT110I CYCGRG 3 cut(s) 51, 342, 458
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 97, 343, 344
BmtI GCTAGC 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 818, 877
BpuMI CCSGG 3 cut(s) 97, 343, 344
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 6 cut(s) 90, 96, 342, 343, 656, 763
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 803
BseDI CCNNGG 6 cut(s) 90, 96, 342, 343, 656, 763
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 803
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 611
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 84, 865
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 2 cut(s) 96, 175
BshFI GGCC 2 cut(s) 95, 387
BsiEI CGRYCG 2 cut(s) 96, 175
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 3 cut(s) 51, 342, 458
BsiSI CCGG 2 cut(s) 96, 343
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 4 cut(s) 325, 341, 446, 501
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 3 cut(s) 54, 171, 224
BsmBI CGTCTC 2 cut(s) 171, 224
BsmFI GGGAC 4 cut(s) 325, 341, 446, 501
BsnI GGCC 2 cut(s) 95, 387
BsoBI CYCGRG 3 cut(s) 51, 342, 458
Bsp119I TTCGAA 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 2 cut(s) 121, 695
Bsp19I CCATGG 2 cut(s) 656, 763
BspANI GGCC 2 cut(s) 95, 387
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 483
BspOI GCTAGC 1 cut(s) 846
BspPI GGATC 2 cut(s) 129, 703
BspQI GCTCTTC 1 cut(s) 626
BspT104I TTCGAA 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 803
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 6 cut(s) 90, 96, 342, 343, 656, 763
BssMI GATC 2 cut(s) 121, 695
BssT1I CCWWGG 2 cut(s) 656, 763
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 1 cut(s) 626
BstBAI YACGTR 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 504
BstC8I GCNNGC 3 cut(s) 319, 681, 844
BstDSI CCRYGG 3 cut(s) 90, 656, 763
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 2 cut(s) 378, 708
BstKTI GATC 2 cut(s) 124, 698
BstMAI GTCTC 3 cut(s) 54, 171, 224
BstMBI GATC 2 cut(s) 121, 695
BstMCI CGRYCG 2 cut(s) 96, 175
BstMWI GCNNNNNNNGC 9 cut(s) 72, 78, 384, 652, 658, 661, 731, 746, 852
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 95, 341, 342
BstSLI GKGCMC 1 cut(s) 611
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 84, 865
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 1 cut(s) 121
BstZI CGGCCG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 2 cut(s) 95, 387
BtgI CCRYGG 3 cut(s) 90, 656, 763
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 319, 681, 844
CfoI GCGC 2 cut(s) 378, 708
Cfr13I GGNCC 1 cut(s) 385
Cfr42I CCGCGG 1 cut(s) 93
Cfr9I CCCGGG 1 cut(s) 342
Csp6I GTAC 3 cut(s) 85, 185, 700
CviAII CATG 3 cut(s) 657, 676, 764
CviQI GTAC 3 cut(s) 85, 185, 700
DpnI GATC 2 cut(s) 123, 697
DpnII GATC 2 cut(s) 121, 695
DriI GACNNNNNGTC 3 cut(s) 46, 334, 337
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 3 cut(s) 46, 334, 337
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 679
EclXI CGGCCG 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 656, 763
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 3 cut(s) 51, 342, 458
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 656, 763
ErhI CCWWGG 2 cut(s) 656, 763
Esp3I CGTCTC 2 cut(s) 171, 224
FaeI CATG 3 cut(s) 660, 679, 767
FaiI YATR 5 cut(s) 629, 644, 658, 677, 765
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 4 cut(s) 325, 341, 446, 501
FatI CATG 3 cut(s) 656, 675, 763
FauI CCCGC 2 cut(s) 68, 310
Fnu4HI GCNGC 9 cut(s) 30, 33, 73, 93, 653, 662, 735, 738, 879
FokI GGATG 1 cut(s) 863
Fsp4HI GCNGC 9 cut(s) 30, 33, 73, 93, 653, 662, 735, 738, 879
FspBI CTAG 1 cut(s) 843
GlaI GCGC 2 cut(s) 377, 707
GluI GCNGC 9 cut(s) 30, 33, 73, 93, 653, 662, 735, 738, 879
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 95, 387
HapII CCGG 2 cut(s) 96, 343
HhaI GCGC 2 cut(s) 378, 708
Hin1II CATG 3 cut(s) 660, 679, 767
Hin6I GCGC 2 cut(s) 376, 706
HinP1I GCGC 2 cut(s) 376, 706
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 4 cut(s) 200, 224, 367, 755
HpaII CCGG 2 cut(s) 96, 343
HphI GGTGA 6 cut(s) 22, 67, 224, 281, 313, 418
Hpy166II GTNNAC 2 cut(s) 454, 609
Hpy188I TCNGA 6 cut(s) 21, 121, 205, 223, 229, 569
Hpy188III TCNNGA 5 cut(s) 142, 245, 595, 781, 887
Hpy8I GTNNAC 2 cut(s) 454, 609
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 2 cut(s) 145, 155
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4IV ACGT 2 cut(s) 474, 526
HpyCH4V TGCA 5 cut(s) 393, 609, 679, 719, 828
HpyF10VI GCNNNNNNNGC 9 cut(s) 72, 78, 384, 652, 658, 661, 731, 746, 852
HpySE526I ACGT 2 cut(s) 474, 526
Hsp92II CATG 3 cut(s) 660, 679, 767
HspAI GCGC 2 cut(s) 376, 706
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 121, 695
LguI GCTCTTC 1 cut(s) 626
LmnI GCTCC 3 cut(s) 5, 78, 543
LpnPI CCDG 7 cut(s) 109, 230, 356, 414, 431, 438, 665
Lsp1109I GCAGC 2 cut(s) 84, 865
MaeI CTAG 1 cut(s) 843
MaeII ACGT 2 cut(s) 474, 526
MaeIII GTNAC 2 cut(s) 470, 527
MalI GATC 2 cut(s) 123, 697
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 121, 695
MboII GAAGA 6 cut(s) 209, 247, 292, 295, 598, 643
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 2 cut(s) 238, 507
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 4 cut(s) 99, 201, 475, 547
MroXI GAANNNNTTC 1 cut(s) 549
MspA1I CMGCKG 2 cut(s) 75, 92
MspI CCGG 2 cut(s) 96, 343
MspR9I CCNGG 3 cut(s) 97, 343, 344
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 9 cut(s) 72, 78, 384, 652, 658, 661, 731, 746, 852
NciI CCSGG 3 cut(s) 97, 343, 344
NcoI CCATGG 2 cut(s) 656, 763
NdeII GATC 2 cut(s) 121, 695
NheI GCTAGC 1 cut(s) 842
NlaIII CATG 3 cut(s) 660, 679, 767
NlaIV GGNNCC 1 cut(s) 483
NspI RCATGY 1 cut(s) 679
NspV TTCGAA 1 cut(s) 504
PaeR7I CTCGAG 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 573
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 200, 224, 755
Pfl23II CGTACG 1 cut(s) 184
PkrI GCNGC 9 cut(s) 31, 34, 74, 94, 654, 663, 736, 739, 880
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 475
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 458
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 3 cut(s) 86, 186, 701
RsaNI GTAC 3 cut(s) 85, 185, 700
SacII CCGCGG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 626
SatI GCNGC 9 cut(s) 30, 33, 73, 93, 653, 662, 735, 738, 879
Sau3AI GATC 2 cut(s) 121, 695
Sau96I GGNCC 1 cut(s) 385
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 3 cut(s) 97, 343, 344
SduI GDGCHC 1 cut(s) 611
Sfr274I CTCGAG 1 cut(s) 458
Sfr303I CCGCGG 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 504
SgrBI CCGCGG 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 458
SmaI CCCGGG 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 458, 797, 856
SmoI CTYRAG 3 cut(s) 458, 797, 856
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 2 cut(s) 238, 507
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 3 cut(s) 95, 341, 342
StyI CCWWGG 2 cut(s) 656, 763
TaaI ACNGT 1 cut(s) 501
TaiI ACGT 2 cut(s) 477, 529
TaqI TCGA 8 cut(s) 141, 413, 447, 459, 504, 543, 576, 758
TaqII GACCGA 1 cut(s) 189
TasI AATT 2 cut(s) 238, 507
TatI WGTACW 1 cut(s) 84
TauI GCSGC 7 cut(s) 32, 35, 95, 655, 664, 737, 740
TfiI GAWTC 3 cut(s) 200, 224, 755
TseI GCWGC 2 cut(s) 72, 878
TspDTI ATGAA 3 cut(s) 127, 210, 644
TspGWI ACGGA 2 cut(s) 202, 684
TspMI CCCGGG 1 cut(s) 342
VneI GTGCAC 1 cut(s) 607
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 2 cut(s) 654, 748
XhoI CTCGAG 1 cut(s) 458
XmaI CCCGGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 843
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.