Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Reverse (-)

29439946 .. 29443170

Gene Structure 3225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACTCCTCCCTGTCCGAGTCTCAGCTGCTTTCGCGTCAGAACGCGAACCAGCTCCTGGATTCTATCGAAGCTTTTCTCTTCGACTGCGATGGTGTCATTTGGAAGGGCGATAAGCTCATCGATGGCGTCCCTCAGACACTCCACTTCCTACGATCAAAGGGGAAGAAGCTGGTGTTCGTTACCAACAATTCCACAAAATCAAGAAAGCAATACGCGGACAAGTTCCTTTCCCTCGGCATTTCGGTTTCTGAGGATGAGATATTCTCTTCATCCTTTGCCGCTGCTATGTACTTGCAACTCATTAACTTCCCCAAACACAAGAAGGTTTATGTGATAGGGGAGCAAGGCATATTGGAAGAGCTGCAGCTTGCTGGATTTACAGCTCTCGGTGGCCCCGAAGATGGGAGAAAAACTGCGCAGCTGAAATCAAATTGTCTCTTTGAACATGATAAGAGTGTTGGAGCAGTTTTGGTTGGACTAGACCAGTATATTAACTATTACAAGCTTCAATATGGAACCCTCTGCATACGTGAAAATCCAGGATGTCTTTTCATTGCAACCAATAGAGATGCAGTTGGACACATGACTGATTTACAAGAATGGCCTGGTGCGGGGTGTATGGTAGCTGCTATCTGTGGATCCACCCAGAAGGAGCCTATTGTAGTTGGAAAGCCATCTAATTTCCTGATGGAATTTTTGTTAAAGAAATTCAATATTAGTTGCTCCAAAATGTGTATGGTGGGTGACAGATTAGATACTGATATATTGTTTGGCCAGAATGCTGGCTGCAGAACTCTACTCGTTCTTTCGGGTGTGACGACTCAATCTGTTCTGGAAGACCCTTCAAATAAGACTCAACCAGAGTACTATACAAGCACGTTGTCCGACATTTTGGACTTGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

304

Amino Acids

33.45

Weight (kDa)

5.65

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 263	2.1e-15	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	26 - 128	2.2e-34	Haloacid dehalogenase-like hydrolase
HAD_2	PF13419	184 - 269	1e-05	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	223 - 297	1.3e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	3 cut(s)	37, 47, 218
AciI	CCGC	3 cut(s)	218, 282, 614
AclWI	GGATC	2 cut(s)	636, 649
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	2 cut(s)	695, 710
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	293, 869
AfiI	CCNNNNNNNGG	4 cut(s)	58, 404, 405, 614
AgsI	TTSAA	4 cut(s)	446, 512, 715, 849
AjnI	CCWGG	3 cut(s)	57, 541, 607
Alw26I	GTCTC	2 cut(s)	27, 443
AlwI	GGATC	2 cut(s)	636, 649
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	3 cut(s)	394, 605, 775
ApeKI	GCWGC	7 cut(s)	28, 284, 364, 367, 421, 629, 789
ApoI	RAATTY	2 cut(s)	695, 710
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	758
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	846
BbvI	GCAGC	7 cut(s)	15, 271, 351, 379, 433, 616, 776
BccI	CCATC	5 cut(s)	86, 119, 398, 685, 685
BciT130I	CCWGG	3 cut(s)	59, 543, 609
BcoDI	GTCTC	2 cut(s)	27, 443
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	365, 790
BisI	GCNGC	8 cut(s)	29, 282, 285, 365, 368, 422, 630, 790
BlsI	GCNGC	8 cut(s)	30, 283, 286, 366, 369, 423, 631, 791
BmcAI	AGTACT	1 cut(s)	869
Bme1390I	CCNGG	3 cut(s)	59, 543, 609
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	4 cut(s)	397, 520, 643, 657
BmrFI	CCNGG	3 cut(s)	59, 543, 609
BmsI	GCATC	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 404, 405, 614
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	3 cut(s)	59, 543, 609
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	262, 272, 551
BseLI	CCNNNNNNNGG	4 cut(s)	58, 404, 405, 614
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	38, 149, 243
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	7 cut(s)	15, 271, 351, 379, 433, 616, 776
Bsh1236I	CGCG	3 cut(s)	37, 47, 218
BshFI	GGCC	3 cut(s)	396, 607, 777
BshVI	ATCGAT	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	58, 404, 405, 614
BsmAI	GTCTC	2 cut(s)	27, 443
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	396, 607, 777
Bsp143I	GATC	2 cut(s)	155, 641
BspACI	CCGC	3 cut(s)	218, 282, 614
BspANI	GGCC	3 cut(s)	396, 607, 777
BspCNI	CTCAG	3 cut(s)	37, 148, 244
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	3 cut(s)	37, 47, 218
BspLI	GGNNCC	4 cut(s)	397, 520, 643, 657
BspMAI	CTGCAG	2 cut(s)	369, 794
BspPI	GGATC	2 cut(s)	636, 649
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	155, 641
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	59, 543, 609
Bst6I	CTCTTC	3 cut(s)	86, 274, 354
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	372, 787
BstDEI	CTNAG	3 cut(s)	24, 135, 252
BstF5I	GGATG	3 cut(s)	262, 272, 551
BstFNI	CGCG	3 cut(s)	37, 47, 218
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	158, 644
BstMAI	GTCTC	2 cut(s)	27, 443
BstMBI	GATC	2 cut(s)	155, 641
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	3 cut(s)	59, 543, 609
BstSCI	CCNGG	3 cut(s)	57, 541, 607
BstSFI	CTRYAG	2 cut(s)	365, 790
BstUI	CGCG	3 cut(s)	37, 47, 218
BstV1I	GCAGC	7 cut(s)	15, 271, 351, 379, 433, 616, 776
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	396, 607, 777
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	262, 272, 551
Cac8I	GCNNGC	2 cut(s)	372, 787
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	2 cut(s)	26, 118
Csp6I	GTAC	2 cut(s)	292, 868
CviAII	CATG	2 cut(s)	449, 586
CviQI	GTAC	2 cut(s)	292, 868
DdeI	CTNAG	3 cut(s)	24, 135, 252
DpnI	GATC	2 cut(s)	157, 643
DpnII	GATC	2 cut(s)	155, 641
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	3 cut(s)	86, 274, 354
EarI	CTCTTC	3 cut(s)	86, 274, 354
EcoRII	CCWGG	3 cut(s)	57, 541, 607
FaeI	CATG	2 cut(s)	452, 589
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	448, 585
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	8 cut(s)	29, 282, 285, 365, 368, 422, 630, 790
FokI	GGATG	3 cut(s)	259, 269, 558
Fsp4HI	GCNGC	8 cut(s)	29, 282, 285, 365, 368, 422, 630, 790
FspBI	CTAG	1 cut(s)	482
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	8 cut(s)	29, 282, 285, 365, 368, 422, 630, 790
HaeIII	GGCC	3 cut(s)	396, 607, 777
HgaI	GACGC	2 cut(s)	26, 118
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	452, 589
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	72, 506
HinfI	GANTC	4 cut(s)	20, 62, 823, 856
HphI	GGTGA	1 cut(s)	758
Hpy188I	TCNGA	5 cut(s)	19, 42, 138, 253, 889
Hpy188III	TCNNGA	3 cut(s)	204, 688, 836
HpyAV	CCTTC	4 cut(s)	100, 319, 646, 855
HpyCH4IV	ACGT	2 cut(s)	532, 881
HpyCH4V	TGCA	6 cut(s)	298, 367, 528, 560, 575, 792
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	24, 135, 252
HpySE526I	ACGT	2 cut(s)	532, 881
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	452, 589
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	155, 641
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	5 cut(s)	60, 343, 464, 655, 731
Lsp1109I	GCAGC	7 cut(s)	15, 271, 351, 379, 433, 616, 776
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	532, 881
MaeIII	GTNAC	3 cut(s)	181, 746, 817
MalI	GATC	2 cut(s)	157, 643
MboI	GATC	2 cut(s)	155, 641
MboII	GAAGA	6 cut(s)	73, 178, 261, 371, 413, 851
MflI	RGATCY	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	5 cut(s)	190, 433, 682, 695, 710
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	3 cut(s)	29, 817, 850
MmeI	TCCRAC	5 cut(s)	442, 457, 559, 649, 912
MnlI	CCTC	5 cut(s)	19, 144, 245, 247, 533
Mox20I	TGGCCA	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	3 cut(s)	306, 495, 704
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	3 cut(s)	28, 284, 424
MspR9I	CCNGG	3 cut(s)	59, 543, 609
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	3 cut(s)	59, 543, 609
MvnI	CGCG	3 cut(s)	37, 47, 218
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	155, 641
NlaIII	CATG	2 cut(s)	452, 589
NlaIV	GGNNCC	4 cut(s)	397, 520, 643, 657
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	2 cut(s)	746, 817
NsbI	TGCGCA	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 818
PctI	GAATGC	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	58
PfoI	TCCNGGA	2 cut(s)	57, 541
PkrI	GCNGC	8 cut(s)	30, 283, 286, 366, 369, 423, 631, 791
PleI	GAGTC	3 cut(s)	28, 817, 850
PpsI	GAGTC	3 cut(s)	28, 817, 850
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	3 cut(s)	57, 541, 607
PspGI	CCWGG	3 cut(s)	57, 541, 607
PspN4I	GGNNCC	4 cut(s)	397, 520, 643, 657
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	369, 794
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	2 cut(s)	28, 424
RsaI	GTAC	2 cut(s)	293, 869
RsaNI	GTAC	2 cut(s)	292, 868
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	306, 495, 704
SatI	GCNGC	8 cut(s)	29, 282, 285, 365, 368, 422, 630, 790
Sau3AI	GATC	2 cut(s)	155, 641
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	3 cut(s)	29, 817, 850
ScrFI	CCNGG	3 cut(s)	59, 543, 609
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	2 cut(s)	365, 790
Sse9I	AATT	5 cut(s)	190, 433, 682, 695, 710
SsiI	CCGC	3 cut(s)	218, 282, 614
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	57, 541, 607
TaiI	ACGT	2 cut(s)	535, 884
TaqI	TCGA	3 cut(s)	69, 84, 123
TasI	AATT	5 cut(s)	190, 433, 682, 695, 710
TatI	WGTACW	2 cut(s)	291, 867
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	306, 495, 704
Tru9I	TTAA	3 cut(s)	306, 495, 704
TseFI	GTSAC	2 cut(s)	746, 817
TseI	GCWGC	7 cut(s)	28, 284, 364, 367, 421, 629, 789
Tsp45I	GTSAC	2 cut(s)	746, 817
TspDTI	ATGAA	3 cut(s)	17, 261, 544
Van91I	CCANNNNNTGG	1 cut(s)	58
XapI	RAATTY	2 cut(s)	695, 710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.