Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

1128290 .. 1130408

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTGCGGCGGACATTGCAGGTATACTGGAAAAGTCGAAAGAGCTTGATCAATTGAGGAAAGAGCAAGAAGAGGTGCTCATTGAGATAAACAAGATGCATAAGAAGCTCCAAACTACTCCTGAAGTGGTTGAGAAGCCCGGGGATAATTCATTGTCGAAGCTGAAGAATTTATATGTGCATGCCAAAGATCGTTCAGAAAGAGAAGTAAGTGTTTCCAATTTGTTGTTGAGTCAGCTTGATGCTCTTTTGCCTTCTGGACCTTCAGGGCAGCCGCGAAGAAGGATGGAAGGTAATGAGCAGAAAAGGAAGAGAATGAAGCCCGAGTCAGATATTTCAAGGATTTCCCCTTCCATGCGAAGTCAACTCGAGGCTCATGCTAGTCTGAAAGGTGAACAGGTAGCAGCGAGGGTCACGGTTACTCAAGAAGATGCTGACAAGGATGAGTGGTTTGTTGTAAAAGTGATGCATTTTGACAAGGATACAAGAGAATTTGAAGTACTAGATGAGGAGCCAGGCGATGATGAAGAGGGCGGTGTCCAAAGAAAGTACAAGTTGCCTATGAGCGCTATTATACCTTTCCCGAAGAGAAACGACGCTTCCAGTGCTATAGATTTCCCCACGGGAAGACCCGTTTTAGCAGTATATCCAGGAACAACTGCACTATACAAGGCAACTGTGGTGAATGGCCATCGCAAGAGGAAGACGGATGATTATTTGTTGGAATTCGATGACGACGAGGAGGACGGATCCTTGCCTCAGAGGACAGTGCCCTTCCATAAGGTGGTTGCCCTGCCGGAAGGCCATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

272

Amino Acids

30.65

Weight (kDa)

5.76

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	130 - 266	2.7e-33	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	277
AciI	CCGC	4 cut(s)	8, 11, 275, 534
AclWI	GGATC	2 cut(s)	744, 757
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	169, 491, 725
AcuI	CTGAAG	3 cut(s)	144, 185, 249
AfaI	GTAC	2 cut(s)	501, 551
AfeI	AGCGCT	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	784
AgsI	TTSAA	2 cut(s)	339, 497
AjnI	CCWGG	2 cut(s)	514, 649
AluBI	AGCT	4 cut(s)	46, 109, 163, 238
AluI	AGCT	4 cut(s)	46, 109, 163, 238
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	744, 757
Ama87I	CYCGRG	3 cut(s)	140, 323, 368
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	2 cut(s)	688, 802
ApeKI	GCWGC	2 cut(s)	271, 404
ApoI	RAATTY	3 cut(s)	169, 491, 725
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	2 cut(s)	141, 142
AsuHPI	GGTGA	2 cut(s)	404, 694
AvaI	CYCGRG	3 cut(s)	140, 323, 368
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	774
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	749
BbsI	GAAGAC	2 cut(s)	634, 710
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	283, 416
BccI	CCATC	3 cut(s)	280, 699, 813
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	2 cut(s)	516, 651
BciVI	GTATCC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	2 cut(s)	141, 142
BfaI	CTAG	2 cut(s)	381, 503
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	4 cut(s)	9, 272, 275, 405
BlsI	GCNGC	4 cut(s)	10, 273, 276, 406
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	141, 142, 516, 651
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	3 cut(s)	140, 323, 368
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	513, 751
BmrFI	CCNGG	4 cut(s)	141, 142, 516, 651
BmsI	GCATC	4 cut(s)	87, 232, 421, 456
BpiI	GAAGAC	2 cut(s)	634, 710
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	141, 142
BsaJI	CCNNGG	3 cut(s)	140, 141, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	3 cut(s)	33, 603, 811
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	516, 651
BseDI	CCNNGG	3 cut(s)	140, 141, 621
BseGI	GGATG	3 cut(s)	291, 448, 715
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	3 cut(s)	33, 603, 811
BseRI	GAGGAG	2 cut(s)	524, 755
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	2 cut(s)	283, 416
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	690, 804
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	3 cut(s)	140, 323, 368
BsiSI	CCGG	2 cut(s)	141, 797
BslI	CCNNNNNNNGG	1 cut(s)	784
BsnI	GGCC	2 cut(s)	690, 804
BsoBI	CYCGRG	3 cut(s)	140, 323, 368
Bsp1286I	GDGCHC	2 cut(s)	81, 774
Bsp143I	GATC	3 cut(s)	49, 190, 749
BspACI	CCGC	4 cut(s)	8, 11, 275, 534
BspANI	GGCC	2 cut(s)	690, 804
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	513, 751
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	744, 757
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	3 cut(s)	33, 603, 811
BssECI	CCNNGG	3 cut(s)	140, 141, 621
BssMI	GATC	3 cut(s)	49, 190, 749
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	516, 651
Bst4CI	ACNGT	3 cut(s)	418, 679, 769
Bst6I	CTCTTC	4 cut(s)	66, 305, 522, 581
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	291, 448, 715
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	3 cut(s)	52, 193, 752
BstMBI	GATC	3 cut(s)	49, 190, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 106, 605
BstNI	CCWGG	2 cut(s)	516, 651
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	4 cut(s)	139, 140, 514, 649
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	774
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	283, 416
BstV2I	GAAGAC	2 cut(s)	634, 710
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BstZ17I	GTATAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	690, 804
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	3 cut(s)	534, 677, 791
BtsCI	GGATG	3 cut(s)	291, 448, 715
BtsIMutI	CAGTG	2 cut(s)	610, 774
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	140
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	500, 550
CviAII	CATG	3 cut(s)	182, 355, 377
CviQI	GTAC	2 cut(s)	500, 550
DdeI	CTNAG	1 cut(s)	759
DpnI	GATC	3 cut(s)	51, 192, 751
DpnII	GATC	3 cut(s)	49, 190, 749
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	4 cut(s)	66, 305, 522, 581
EarI	CTCTTC	4 cut(s)	66, 305, 522, 581
EciI	GGCGGA	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	568
Eco57I	CTGAAG	3 cut(s)	144, 185, 249
Eco88I	CYCGRG	3 cut(s)	140, 323, 368
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	514, 649
EcoT22I	ATGCAT	2 cut(s)	102, 471
FaeI	CATG	3 cut(s)	185, 358, 380
FatI	CATG	3 cut(s)	181, 354, 376
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	9, 272, 275, 405
FokI	GGATG	3 cut(s)	298, 455, 722
Fsp4HI	GCNGC	4 cut(s)	9, 272, 275, 405
FspBI	CTAG	2 cut(s)	381, 503
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	4 cut(s)	9, 272, 275, 405
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	690, 804
HapII	CCGG	2 cut(s)	141, 797
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	185, 358, 380
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	232, 326
HpaII	CCGG	2 cut(s)	141, 797
HphI	GGTGA	2 cut(s)	404, 694
Hpy166II	GTNNAC	3 cut(s)	26, 365, 395
Hpy188I	TCNGA	4 cut(s)	199, 331, 387, 762
Hpy188III	TCNNGA	4 cut(s)	122, 258, 425, 583
Hpy8I	GTNNAC	3 cut(s)	26, 365, 395
Hpy99I	CGWCG	2 cut(s)	599, 740
HpyAV	CCTTC	7 cut(s)	264, 273, 276, 284, 360, 784, 794
HpyCH4III	ACNGT	3 cut(s)	418, 679, 769
HpyCH4V	TGCA	5 cut(s)	20, 100, 181, 469, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 106, 605
HpyF3I	CTNAG	1 cut(s)	759
Hsp92II	CATG	3 cut(s)	185, 358, 380
HspAI	GCGC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 190, 749
LmnI	GCTCC	2 cut(s)	114, 511
Lsp1109I	GCAGC	2 cut(s)	283, 416
LweI	GCATC	4 cut(s)	87, 232, 421, 456
MaeI	CTAG	2 cut(s)	381, 503
MaeIII	GTNAC	2 cut(s)	412, 418
MalI	GATC	3 cut(s)	51, 192, 751
MboI	GATC	3 cut(s)	49, 190, 749
MboII	GAAGA	9 cut(s)	83, 178, 291, 322, 440, 539, 598, 639, 715
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	2 cut(s)	81, 774
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	2 cut(s)	241, 335
MmeI	TCCRAC	1 cut(s)	702
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	2 cut(s)	102, 471
MscI	TGGCCA	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	141, 797
MspR9I	CCNGG	4 cut(s)	141, 142, 516, 651
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	516, 651
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	17, 106, 605
NciI	CCSGG	2 cut(s)	141, 142
NdeII	GATC	3 cut(s)	49, 190, 749
NlaIII	CATG	3 cut(s)	185, 358, 380
NlaIV	GGNNCC	2 cut(s)	513, 751
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	2 cut(s)	102, 471
NspI	RCATGY	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PflMI	CCANNNNNTGG	1 cut(s)	784
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	4 cut(s)	10, 273, 276, 406
PleI	GAGTC	2 cut(s)	240, 334
PpsI	GAGTC	2 cut(s)	240, 334
Psp6I	CCWGG	2 cut(s)	514, 649
PspGI	CCWGG	2 cut(s)	514, 649
PspN4I	GGNNCC	2 cut(s)	513, 751
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	749
RsaI	GTAC	2 cut(s)	501, 551
RsaNI	GTAC	2 cut(s)	500, 550
SatI	GCNGC	4 cut(s)	9, 272, 275, 405
Sau3AI	GATC	3 cut(s)	49, 190, 749
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	2 cut(s)	241, 335
ScrFI	CCNGG	4 cut(s)	141, 142, 516, 651
SduI	GDGCHC	2 cut(s)	81, 774
SfaNI	GCATC	4 cut(s)	87, 232, 421, 456
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	368
SmaI	CCCGGG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	368, 423
SmoI	CTYRAG	2 cut(s)	368, 423
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
SsiI	CCGC	4 cut(s)	8, 11, 275, 534
SspMI	CTAG	2 cut(s)	381, 503
StyD4I	CCNGG	4 cut(s)	139, 140, 514, 649
TaaI	ACNGT	3 cut(s)	418, 679, 769
TaqI	TCGA	4 cut(s)	38, 158, 369, 729
TasI	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
TatI	WGTACW	2 cut(s)	499, 549
TauI	GCSGC	2 cut(s)	11, 277
TscAI	CASTG	2 cut(s)	610, 774
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	271, 404
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	141, 332, 540
TspGWI	ACGGA	2 cut(s)	722, 762
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	2 cut(s)	610, 774
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	169, 491, 725
XceI	RCATGY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	381, 503
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	2 cut(s)	102, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.