pycom111g02240

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0011914
Physical Location & Seq
Reverse (-)
1340553 .. 1344970
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2814 bp
ATGAGCCAACTTTCTATTGATTTTGAAGGATCAATGGAGTTAAAAGTTTCATCTCCAAAACCGGGGGGCCTTTCTCCTTCTGATTGCATTAGTGATCCTGAGGAGAAGGAATTAAGTGATGATGATGATGACGATCGAAACCACAAGCATCGTAGACGAGACACTCGCTCTCAGTCTTTGGAGACAGATACTCTTGATCAAGTTATAACAAGGCCATTCAGAAACCGAAACAAACCTTTTGTAAACGGGAACACTTTTAGGGATAATGACTCTCAAGCGAGTACACCGTGGAGAAATCAAAATTCCACTGACTTTTCTGTAAAGTTTGATAAAAGACGCCCGGGGTCAACATCACTGCCTCGAGCGCCTTTTGATTTGAATCAAAGAATCCGGGCAAACCAAGCATTTCCTGGAGACCTTGGTCCTGGTAGGGGAAGAGGAAGGGACTATCGATCATGGAGCCAGTGCGGTCCTAGGTTCAACTCAGATTTTGCTTCTCAAATGGTTCAGCAGGGCTCCATTCGTCCGAGTCTTTTTCCCGGGCGTGGATTGCCAAATGTTTCCAGTGCACAAAGTGGATCCTGGAATGCATTTGGATTGATTCCAGGAATACCAAATGGTTCCATGGATACACTACATTCCATTGGCTTGCAAGGAACACTCCGACCACCAATCCATTCTTCATTAAACATGGGGATTCCTCTCCCAAGATGTAGAGACTTTGAGGAGCGTGGATTTTGTCTTAGAGGAGATATGTGCCCAATGGAGCATGGTGTGAATCGGATTGTTATTGAAGATGTCCAGAGTCTTTCTCAGTTCAACCTCCCTGTGTCAATTCCAAATGCACACTTACTGGGAAAACCCACAGGCCCTGGATCTCTACCATCAGTGAGTGCATCCTCAACTGCATTGCTGAATAGCAAAAGCTTACATGGAAAAACGAGCAAGACTGCTGTCACTGATGATGGCTTGGGCGTGAATGGTTCATATTCTGGTCCTGGTTATGCGGATGGTGCTGATTTATATGACCCTGATCAACCCCTGTGGAATAATAACTGTCCTGAAACCTCAAGTGCCCTACTAGGCCTGCAATCACCCAGGAATGATGAAACTGAAACCTTGTCGAACGATGTTGATAATGAATTCCCAATTAGAAGTGTTGGGACTGCTTCCAGTTCACAGAGTACAAGCATGTCCGTGTGGGGTAGAATTGGTAGTTCAAAAAGTAGATTAGATGTGAAGGAGAAAATTGATCCTGTAATAAATTCTTCAGATTATATTGAGAGTGATACGAAGGAACGTAAGGAGGCATTAGTCAACATTCAAACTCCACCGCGTCAAGGAAAGCGTATAATTGCAGAGGATGGCCCAAACACCATGGATTCATTACCCAAGACGCCTTTTGATTCCACTCGTAACATTCGGAGGCCATCTCAAAAAGCACTGCGTACTCTATTTGTCTATGGCATCCCTCAGAAAAACAACAAAAGGGAGGCTCTTCTTTCTCATTTTCAAAAATTTGGAGAGGTCATTGACATCTATATTCCATCAAATAGTGAACGAGCTTTTATCCAGTTTTCAAGGAGGGAAGAGGCTGAAGCTGCTTTAACGGCACCTGATGCTGTAATGGGTAACCGATTTATCAGGTTGTGGTGGGCTAATCGTGATAGGATTCCTGATGAGGGGACAGGCACTCCCAGTAATTTTTCTGGAACTCCCCATGCAACTGGTTTGGTGCCACCCCATTCATCTGGTGCTAGTATTGGCAAGGATAATCTTCAATCTGCTGCTCCAAAGGATAGTATTGTCCATGCATCTGATGCTTCTCTACCTGCCATTGATAACTCCAAGCCTATCAACTCAAATGGTCCCAAGGCCCCACCTCTGCAGAAAAAGCTAGATAGTTTAGAGCAGTTGAAGGAGGAACTTCGCAAGAAGCAGGAAATGCTGGCCCAGAAAAGGAATGACTTTCGTCGCCAGTTGGACAAGCTTGAGAAACAAGCTACTGGACCCAAGGGTGAGGCAGACACAGAGCAAGCTGCTAAGAGACCCAAAGTGGGAACAACAACCGAAGCTGGTAAAGCTGTGACTCCAAGCTCCTCAAATCCTGCTCGTGCGGATGCAATGCATGCTGAAATGACTGATAAGAACAAATCAGGGGAGAGCATTGTGTCCTGTAGTCCAAAACCCAGTACACCTGTGGTGCTGCAGCAATCTCCTAGCTTGAAGCTGCAGACTATCCGTCCATTGGGACCACTGGGTTTACCTTCTCCTTTGAATAGATATAAATTAGACAACCGTCCTACTGGTTTTAAAATTCTTCCTCCTTTACCAGCTGGATTTGCAAATGTTGCTATTATGAAGGAACACTTTTCACCCTATGGTGATCTTTCTAATGCGGAATTAGAAGATCTGGAATCCCGTGAAGGTGATAGTGAGTTGGAAAAATCAAAAGATTGCTCAGCTCGTATAACTTTCACAACACGCCGCTCAGCAGAGAGGGCATTTCTCAATGGTAAATGCTGGGAAGGACACGATCTGAAATTTATGTGGCTGACATCTAGTACCGGCAATGACCGCAGTGGTAGAGAAAACTCTCCATCTACCACTCCTAAGGGGCCATTACTAGCTGATGCTCAGCCTGCAGATAAAGAAGCATGCATTGATTCCCAGGAAGCTGCTGCATCAGGAAATGGACCGGAACATTCTGAACAAATAAGTGGCGTTGAGGACATGGAATCGGATGAACATGCCGAGCCTAGTCCAAGGTCAACATCAGGCGACAAAGAGTCATCTCAGGGCGATGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

938

Amino Acids

102.17

Weight (kDa)

6.22

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 485 - 548 3.1e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 1840
AccB1I GGYRCC 2 cut(s) 1612, 1735
AccBSI CCGCTC 1 cut(s) 2490
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 1336
AciI CCGC 7 cut(s) 468, 1007, 1334, 2117, 2399, 2488, 2578
AclWI GGATC 6 cut(s) 37, 89, 573, 586, 883, 1247
AcsI RAATTY 6 cut(s) 301, 1142, 1264, 1517, 2316, 2543
AcuI CTGAAG 2 cut(s) 1254, 1617
AcyI GRCGYC 2 cut(s) 337, 1397
AdeI CACNNNGTG 1 cut(s) 575
AfaI GTAC 5 cut(s) 283, 1186, 1450, 2194, 2566
AfiI CCNNNNNNNGG 8 cut(s) 62, 431, 545, 1340, 1682, 1959, 2057, 2248
AhdI GACNNNNNGTC 2 cut(s) 2241, 2788
AjnI CCWGG 8 cut(s) 409, 424, 581, 604, 871, 997, 1097, 2670
AjuI GAANNNNNNNTTGG 2 cut(s) 664, 696
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 5 cut(s) 153, 176, 408, 711, 2041
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 6 cut(s) 37, 89, 573, 586, 883, 1247
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 3 cut(s) 340, 360, 539
AoxI GGCC 9 cut(s) 67, 212, 868, 1084, 1366, 1427, 1875, 1950, 2618
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 8 cut(s) 1601, 1787, 2039, 2206, 2209, 2230, 2678, 2681
ApoI RAATTY 6 cut(s) 301, 1142, 1264, 1517, 2316, 2543
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 1 cut(s) 367
AsuC2I CCSGG 6 cut(s) 63, 341, 342, 392, 540, 541
AsuHPI GGTGA 5 cut(s) 1086, 2030, 2367, 2396, 2441
AvaI CYCGRG 3 cut(s) 340, 360, 539
AvaII GGWCC 7 cut(s) 422, 470, 995, 1868, 2009, 2252, 2696
AvrII CCTAGG 1 cut(s) 473
AxyI CCTNAGG 2 cut(s) 99, 2613
BaeGI GKGCMC 3 cut(s) 571, 761, 1078
BamHI GGATCC 1 cut(s) 578
BanI GGYRCC 2 cut(s) 1612, 1735
BanII GRGCYC 1 cut(s) 518
BauI CACGAG 1 cut(s) 2112
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 8 cut(s) 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668
BccI CCATC 7 cut(s) 892, 959, 1004, 1358, 1438, 1555, 2608
BceAI ACGGC 1 cut(s) 1626
BciT130I CCWGG 8 cut(s) 411, 426, 583, 606, 873, 999, 1099, 2672
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 2 cut(s) 196, 1033
BcnI CCSGG 6 cut(s) 63, 341, 342, 392, 540, 541
BcoDI GTCTC 5 cut(s) 153, 176, 408, 711, 2041
BfaI CTAG 8 cut(s) 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760
BfmI CTRYAG 5 cut(s) 1886, 2176, 2207, 2231, 2643
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 1840
BfuI GTATCC 1 cut(s) 622
BglII AGATCT 1 cut(s) 2410
BisI GCNGC 9 cut(s) 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682
BlnI CCTAGG 1 cut(s) 473
BlpI GCTNAGC 3 cut(s) 2461, 2491, 2637
BlsI GCNGC 9 cut(s) 1603, 1789, 2041, 2208, 2211, 2232, 2489, 2680, 2683
Bme18I GGWCC 7 cut(s) 422, 470, 995, 1868, 2009, 2252, 2696
BmeRI GACNNNNNGTC 2 cut(s) 2241, 2788
BmeT110I CYCGRG 3 cut(s) 340, 360, 539
BmrI ACTGGG 4 cut(s) 863, 1692, 2184, 2267
BmuI ACTGGG 4 cut(s) 863, 1692, 2184, 2267
BoxI GACNNNNGTC 4 cut(s) 420, 953, 1971, 2298
BplI GAGNNNNNCTC 4 cut(s) 796, 828, 1417, 1449
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 3 cut(s) 2461, 2491, 2637
BpuEI CTTGAG 3 cut(s) 258, 1054, 2012
BpuMI CCSGG 6 cut(s) 63, 341, 342, 392, 540, 541
Bsa29I ATCGAT 1 cut(s) 451
BsaBI GATNNNNATC 2 cut(s) 132, 378
BsaHI GRCGYC 2 cut(s) 337, 1397
BsaI GGTCTC 2 cut(s) 408, 2041
BsaWI WCCGGW 1 cut(s) 2698
BsaXI ACNNNNNCTCC 2 cut(s) 1678, 1708
Bsc4I CCNNNNNNNGG 8 cut(s) 62, 431, 545, 1340, 1682, 1959, 2057, 2248
Bse118I RCCGGY 1 cut(s) 2567
Bse21I CCTNAGG 2 cut(s) 99, 2613
Bse3DI GCAATG 3 cut(s) 908, 2130, 2578
Bse8I GATNNNNATC 2 cut(s) 132, 378
BseBI CCWGG 8 cut(s) 411, 426, 583, 606, 873, 999, 1099, 2672
BseCI ATCGAT 1 cut(s) 451
BseGI GGATG 6 cut(s) 896, 1015, 1369, 1467, 2125, 2749
BseJI GATNNNNATC 2 cut(s) 132, 378
BseLI CCNNNNNNNGG 8 cut(s) 62, 431, 545, 1340, 1682, 1959, 2057, 2248
BseMI GCAATG 3 cut(s) 908, 2130, 2578
BseMII CTCAG 9 cut(s) 90, 185, 498, 827, 1487, 2475, 2505, 2651, 2810
BseRI GAGGAG 4 cut(s) 116, 740, 762, 2089
BseSI GKGCMC 3 cut(s) 571, 761, 1078
BseXI GCAGC 8 cut(s) 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668
BseYI CCCAGC 1 cut(s) 2523
Bsh1236I CGCG 1 cut(s) 1336
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 9 cut(s) 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620
BshNI GGYRCC 2 cut(s) 1612, 1735
BshVI ATCGAT 1 cut(s) 451
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 3 cut(s) 340, 360, 539
BsiSI CCGG 6 cut(s) 62, 341, 391, 540, 2568, 2699
BslFI GGGAC 5 cut(s) 458, 1177, 1699, 1854, 2265
BslI CCNNNNNNNGG 8 cut(s) 62, 431, 545, 1340, 1682, 1959, 2057, 2248
BsmAI GTCTC 5 cut(s) 153, 176, 408, 711, 2041
BsmFI GGGAC 5 cut(s) 458, 1177, 1699, 1854, 2265
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 9 cut(s) 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620
Bso31I GGTCTC 2 cut(s) 408, 2041
BsoBI CYCGRG 3 cut(s) 340, 360, 539
Bsp1286I GDGCHC 4 cut(s) 518, 571, 761, 1078
Bsp1720I GCTNAGC 3 cut(s) 2461, 2491, 2637
Bsp19I CCATGG 2 cut(s) 624, 1377
BspACI CCGC 7 cut(s) 468, 1007, 1334, 2117, 2399, 2488, 2578
BspANI GGCC 9 cut(s) 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620
BspCNI CTCAG 9 cut(s) 91, 184, 497, 826, 1486, 2474, 2504, 2650, 2809
BspDI ATCGAT 1 cut(s) 451
BspFNI CGCG 1 cut(s) 1336
BspMAI CTGCAG 4 cut(s) 1890, 2211, 2235, 2647
BspMI ACCTGC 1 cut(s) 1840
BspPI GGATC 6 cut(s) 37, 89, 573, 586, 883, 1247
BspQI GCTCTTC 1 cut(s) 1503
BspT107I GGYRCC 2 cut(s) 1612, 1735
BspTNI GGTCTC 2 cut(s) 408, 2041
BsrBI CCGCTC 1 cut(s) 2490
BsrDI GCAATG 3 cut(s) 908, 2130, 2578
BsrFI RCCGGY 1 cut(s) 2567
BssAI RCCGGY 1 cut(s) 2567
BssNI GRCGYC 2 cut(s) 337, 1397
BssSI CACGAG 1 cut(s) 2112
BssT1I CCWWGG 7 cut(s) 418, 473, 624, 1377, 1872, 2013, 2765
Bst2BI CACGAG 1 cut(s) 2112
Bst2UI CCWGG 8 cut(s) 411, 426, 583, 606, 873, 999, 1099, 2672
Bst4CI ACNGT 3 cut(s) 288, 1058, 2300
Bst6I CTCTTC 3 cut(s) 430, 1503, 1584
BstACI GRCGYC 2 cut(s) 337, 1397
BstAPI GCANNNNNTGC 5 cut(s) 1619, 1820, 1945, 2129, 2351
BstC8I GCNNGC 7 cut(s) 650, 1088, 1950, 2037, 2130, 2643, 2659
BstDSI CCRYGG 3 cut(s) 287, 624, 1377
BstEII GGTNACC 1 cut(s) 1631
BstF5I GGATG 6 cut(s) 896, 1015, 1369, 1467, 2125, 2749
BstFNI CGCG 1 cut(s) 1336
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstMAI GTCTC 5 cut(s) 153, 176, 408, 711, 2041
BstMCI CGRYCG 1 cut(s) 136
BstNI CCWGG 8 cut(s) 411, 426, 583, 606, 873, 999, 1099, 2672
BstNSI RCATGY 4 cut(s) 1195, 2132, 2661, 2753
BstPAI GACNNNNGTC 4 cut(s) 420, 953, 1971, 2298
BstPI GGTNACC 1 cut(s) 1631
BstSFI CTRYAG 5 cut(s) 1886, 2176, 2207, 2231, 2643
BstSLI GKGCMC 3 cut(s) 571, 761, 1078
BstUI CGCG 1 cut(s) 1336
BstV1I GCAGC 8 cut(s) 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668
BstX2I RGATCY 3 cut(s) 578, 875, 2410
BstXI CCANNNNNNTGG 2 cut(s) 1727, 1751
BstYI RGATCY 3 cut(s) 578, 875, 2410
Bsu15I ATCGAT 1 cut(s) 451
Bsu36I CCTNAGG 2 cut(s) 99, 2613
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 9 cut(s) 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620
BsuTUI ATCGAT 1 cut(s) 451
BtgI CCRYGG 3 cut(s) 287, 624, 1377
BtsCI GGATG 6 cut(s) 896, 1015, 1369, 1467, 2125, 2749
BtsI GCAGTG 3 cut(s) 353, 1442, 2587
BtsIMutI CAGTG 9 cut(s) 306, 353, 470, 571, 894, 957, 1442, 2255, 2587
BveI ACCTGC 1 cut(s) 1840
Cac8I GCNNGC 7 cut(s) 650, 1088, 1950, 2037, 2130, 2643, 2659
CaiI CAGNNNCTG 1 cut(s) 872
CfoI GCGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 2567
Cfr9I CCCGGG 2 cut(s) 340, 539
ClaI ATCGAT 1 cut(s) 451
CseI GACGC 3 cut(s) 345, 1325, 1405
Csp6I GTAC 5 cut(s) 282, 1185, 1449, 2193, 2565
CspCI CAANNNNNGTGG 2 cut(s) 1025, 1060
CviQI GTAC 5 cut(s) 282, 1185, 1449, 2193, 2565
DraI TTTAAA 1 cut(s) 2314
DraIII CACNNNGTG 1 cut(s) 575
DriI GACNNNNNGTC 2 cut(s) 2241, 2788
Eam1104I CTCTTC 3 cut(s) 430, 1503, 1584
Eam1105I GACNNNNNGTC 2 cut(s) 2241, 2788
EarI CTCTTC 3 cut(s) 430, 1503, 1584
Eco130I CCWWGG 7 cut(s) 418, 473, 624, 1377, 1872, 2013, 2765
Eco147I AGGCCT 1 cut(s) 1086
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 2 cut(s) 408, 2041
Eco47I GGWCC 7 cut(s) 422, 470, 995, 1868, 2009, 2252, 2696
Eco57I CTGAAG 2 cut(s) 1254, 1617
Eco81I CCTNAGG 2 cut(s) 99, 2613
Eco88I CYCGRG 3 cut(s) 340, 360, 539
Eco91I GGTNACC 1 cut(s) 1631
EcoO109I RGGNCCY 3 cut(s) 67, 869, 1876
EcoO65I GGTNACC 1 cut(s) 1631
EcoRI GAATTC 1 cut(s) 1142
EcoRII CCWGG 8 cut(s) 409, 424, 581, 604, 871, 997, 1097, 2670
EcoT14I CCWWGG 7 cut(s) 418, 473, 624, 1377, 1872, 2013, 2765
EcoT22I ATGCAT 5 cut(s) 592, 1816, 2130, 2663, 2809
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 7 cut(s) 418, 473, 624, 1377, 1872, 2013, 2765
FalI AAGNNNNNCTT 2 cut(s) 2354, 2386
FaqI GGGAC 5 cut(s) 458, 1177, 1699, 1854, 2265
FbaI TGATCA 2 cut(s) 196, 1033
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 9 cut(s) 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682
FokI GGATG 6 cut(s) 883, 1022, 1376, 1454, 2132, 2756
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 9 cut(s) 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682
FspBI CTAG 8 cut(s) 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760
GlaI GCGC 1 cut(s) 366
GluI GCNGC 9 cut(s) 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682
GsaI CCCAGC 1 cut(s) 2527
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 9 cut(s) 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620
HapII CCGG 6 cut(s) 62, 341, 391, 540, 2568, 2699
HgaI GACGC 3 cut(s) 345, 1325, 1405
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 2 cut(s) 337, 1397
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 3 cut(s) 348, 1318, 2772
HindII GTYRAC 3 cut(s) 348, 1318, 2772
HindIII AAGCTT 2 cut(s) 925, 1988
HpaII CCGG 6 cut(s) 62, 341, 391, 540, 2568, 2699
HphI GGTGA 5 cut(s) 1086, 2030, 2367, 2396, 2441
Hpy188III TCNNGA 9 cut(s) 98, 194, 802, 1061, 1664, 1676, 1710, 2414, 2688
Hpy99I CGWCG 1 cut(s) 1977
HpyCH4III ACNGT 3 cut(s) 288, 1058, 2300
HpyCH4IV ACGT 1 cut(s) 1300
HpySE526I ACGT 1 cut(s) 1300
Hsp92I GRCGYC 2 cut(s) 337, 1397
HspAI GCGC 1 cut(s) 365
Ksp22I TGATCA 2 cut(s) 196, 1033
LguI GCTCTTC 1 cut(s) 1503
LmnI GCTCC 6 cut(s) 459, 521, 727, 766, 1795, 2102
Lsp1109I GCAGC 8 cut(s) 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668
MaeI CTAG 8 cut(s) 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760
MaeII ACGT 1 cut(s) 1300
MaeIII GTNAC 4 cut(s) 955, 1415, 1631, 2086
MbiI CCGCTC 1 cut(s) 2490
MboII GAAGA 9 cut(s) 447, 672, 806, 1260, 1490, 1601, 1769, 2312, 2420
MflI RGATCY 3 cut(s) 578, 875, 2410
MhlI GDGCHC 4 cut(s) 518, 571, 761, 1078
MlyI GAGTC 5 cut(s) 263, 538, 814, 2083, 2798
MmeI TCCRAC 3 cut(s) 688, 1962, 2421
Mph1103I ATGCAT 5 cut(s) 592, 1816, 2130, 2663, 2809
MseI TTAA 5 cut(s) 41, 113, 686, 1607, 2313
MslI CAYNNNNRTG 1 cut(s) 1196
MspA1I CMGCKG 1 cut(s) 2336
MspI CCGG 6 cut(s) 62, 341, 391, 540, 2568, 2699
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 8 cut(s) 411, 426, 583, 606, 873, 999, 1099, 2672
MvnI CGCG 1 cut(s) 1336
NciI CCSGG 6 cut(s) 63, 341, 342, 392, 540, 541
NcoI CCATGG 2 cut(s) 624, 1377
NmeAIII GCCGAG 1 cut(s) 2779
NmuCI GTSAC 2 cut(s) 955, 2086
NsiI ATGCAT 5 cut(s) 592, 1816, 2130, 2663, 2809
NspI RCATGY 4 cut(s) 1195, 2132, 2661, 2753
PaeI GCATGC 2 cut(s) 2132, 2661
PaeR7I CTCGAG 1 cut(s) 360
PceI AGGCCT 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 1503
PctI GAATGC 1 cut(s) 592
PfoI TCCNGGA 3 cut(s) 409, 581, 604
PkrI GCNGC 9 cut(s) 1603, 1789, 2041, 2208, 2211, 2232, 2489, 2680, 2683
Ple19I CGATCG 1 cut(s) 136
PleI GAGTC 5 cut(s) 263, 537, 813, 2083, 2797
PpsI GAGTC 5 cut(s) 263, 537, 813, 2083, 2797
PshAI GACNNNNGTC 4 cut(s) 420, 953, 1971, 2298
PsiI TTATAA 1 cut(s) 206
Psp6I CCWGG 8 cut(s) 409, 424, 581, 604, 871, 997, 1097, 2670
PspEI GGTNACC 1 cut(s) 1631
PspFI CCCAGC 1 cut(s) 2523
PspGI CCWGG 8 cut(s) 409, 424, 581, 604, 871, 997, 1097, 2670
PspXI VCTCGAGB 1 cut(s) 360
PstI CTGCAG 4 cut(s) 1890, 2211, 2235, 2647
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 3 cut(s) 578, 875, 2410
PvuI CGATCG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 2336
RsaI GTAC 5 cut(s) 283, 1186, 1450, 2194, 2566
RsaNI GTAC 5 cut(s) 282, 1185, 1449, 2193, 2565
RseI CAYNNNNRTG 1 cut(s) 1196
SapI GCTCTTC 1 cut(s) 1503
SaqAI TTAA 5 cut(s) 41, 113, 686, 1607, 2313
SatI GCNGC 9 cut(s) 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682
SchI GAGTC 5 cut(s) 263, 538, 814, 2083, 2798
SduI GDGCHC 4 cut(s) 518, 571, 761, 1078
SfcI CTRYAG 5 cut(s) 1886, 2176, 2207, 2231, 2643
Sfr274I CTCGAG 1 cut(s) 360
SinI GGWCC 7 cut(s) 422, 470, 995, 1868, 2009, 2252, 2696
SlaI CTCGAG 1 cut(s) 360
SmaI CCCGGG 2 cut(s) 342, 541
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 4 cut(s) 273, 360, 1069, 1991
SmoI CTYRAG 4 cut(s) 273, 360, 1069, 1991
SphI GCATGC 2 cut(s) 2132, 2661
SseBI AGGCCT 1 cut(s) 1086
SsiI CCGC 7 cut(s) 468, 1007, 1334, 2117, 2399, 2488, 2578
SspMI CTAG 8 cut(s) 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760
StuI AGGCCT 1 cut(s) 1086
StyI CCWWGG 7 cut(s) 418, 473, 624, 1377, 1872, 2013, 2765
TaaI ACNGT 3 cut(s) 288, 1058, 2300
TaiI ACGT 1 cut(s) 1303
TaqI TCGA 4 cut(s) 136, 361, 451, 1124
TatI WGTACW 3 cut(s) 281, 1184, 2192
TauI GCSGC 1 cut(s) 2490
Tru1I TTAA 5 cut(s) 41, 113, 686, 1607, 2313
Tru9I TTAA 5 cut(s) 41, 113, 686, 1607, 2313
TscAI CASTG 9 cut(s) 313, 360, 470, 571, 894, 964, 1449, 2262, 2587
TseFI GTSAC 2 cut(s) 955, 2086
TseI GCWGC 8 cut(s) 1601, 1787, 2039, 2206, 2209, 2230, 2678, 2681
Tsp45I GTSAC 2 cut(s) 955, 2086
TspDTI ATGAA 9 cut(s) 39, 672, 975, 1122, 1155, 1374, 1737, 2375, 2760
TspGWI ACGGA 2 cut(s) 1186, 2231
TspMI CCCGGG 2 cut(s) 340, 539
TspRI CASTG 9 cut(s) 313, 360, 470, 571, 894, 964, 1449, 2262, 2587
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 7 cut(s) 422, 470, 995, 1868, 2009, 2252, 2696
XapI RAATTY 6 cut(s) 301, 1142, 1264, 1517, 2316, 2543
XceI RCATGY 4 cut(s) 1195, 2132, 2661, 2753
XcmI CCANNNNNNNNNTGG 2 cut(s) 407, 2197
XhoI CTCGAG 1 cut(s) 360
XmaI CCCGGG 2 cut(s) 340, 539
XmaJI CCTAGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 8 cut(s) 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760
Zsp2I ATGCAT 5 cut(s) 592, 1816, 2130, 2663, 2809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.