Belongs to the ClpA ClpB family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15450 |
| fragaria_vesca | FvH4_6g47410 FvH4_6g47410 FvH4_6g47410 |
| malus_domestica | MD00G1172100.v1.1 MD09G1061700.v1.1 |
| prunus_persica | Prupe.3G258500_v2.0.a1 Prupe.3G258500_v2.0.a1 Prupe.3G258500_v2.0.a1 |
| pyrus_communis | pycom111g05200 pycom17g05590 |
| rosa_chinensis | RchiOBHm_Chr2g0166481 |
| rosa_laevigata | RLG00000021622 |
| rosa_multiflora | Rmu_ssc0000296.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00084860 |
| rosa_rugosa | Rorug02G0523200 |
| rosa_samantha | Rh2AG589400 Rh2BG601600 Rh2CG572200 Rh2DG612100 |
| rosa_wichuraiana | Rw2G049120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 816, 1109 |
| AatII | GACGTC | 1 cut(s) | 945 |
| Acc36I | ACCTGC | 2 cut(s) | 816, 1109 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 890 |
| AccI | GTMKAC | 2 cut(s) | 37, 426 |
| AciI | CCGC | 6 cut(s) | 11, 97, 196, 1186, 1396, 1588 |
| AclWI | GGATC | 4 cut(s) | 713, 997, 1093, 1232 |
| AcsI | RAATTY | 5 cut(s) | 211, 819, 837, 1022, 1353 |
| AcuI | CTGAAG | 2 cut(s) | 744, 1058 |
| AcyI | GRCGYC | 3 cut(s) | 5, 697, 942 |
| AfaI | GTAC | 2 cut(s) | 752, 1047 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 420, 693, 803, 890, 985, 1169, 1594 |
| AjiI | CACGTC | 1 cut(s) | 515 |
| AjnI | CCWGG | 2 cut(s) | 542, 883 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 359, 391, 873, 905 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1241, 1273 |
| Alw21I | GWGCWC | 1 cut(s) | 1369 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| Alw44I | GTGCAC | 1 cut(s) | 1365 |
| AlwI | GGATC | 4 cut(s) | 713, 997, 1093, 1232 |
| AoxI | GGCC | 7 cut(s) | 12, 144, 218, 417, 447, 1072, 1491 |
| ApaLI | GTGCAC | 1 cut(s) | 1365 |
| ApeKI | GCWGC | 6 cut(s) | 72, 1318, 1379, 1451, 1454, 1758 |
| ApoI | RAATTY | 5 cut(s) | 211, 819, 837, 1022, 1353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 343, 375 |
| AspLEI | GCGC | 1 cut(s) | 234 |
| AspS9I | GGNCC | 3 cut(s) | 144, 1072, 1492 |
| AsuC2I | CCSGG | 5 cut(s) | 28, 143, 421, 436, 1313 |
| AsuHPI | GGTGA | 2 cut(s) | 500, 890 |
| BaeGI | GKGCMC | 1 cut(s) | 1369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1724, 1757 |
| Bbv12I | GWGCWC | 1 cut(s) | 1369 |
| BbvCI | CCTCAGC | 1 cut(s) | 113 |
| BbvI | GCAGC | 5 cut(s) | 59, 1305, 1366, 1438, 1441 |
| BccI | CCATC | 1 cut(s) | 1355 |
| BceAI | ACGGC | 1 cut(s) | 1506 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 899, 933 |
| BciT130I | CCWGG | 2 cut(s) | 544, 885 |
| BclI | TGATCA | 1 cut(s) | 1276 |
| BcnI | CCSGG | 5 cut(s) | 28, 143, 421, 436, 1313 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 1496 |
| BfmI | CTRYAG | 3 cut(s) | 73, 678, 1284 |
| BfuAI | ACCTGC | 2 cut(s) | 816, 1109 |
| BisI | GCNGC | 8 cut(s) | 12, 73, 197, 1319, 1380, 1452, 1455, 1759 |
| BlpI | GCTNAGC | 1 cut(s) | 1638 |
| BlsI | GCNGC | 8 cut(s) | 13, 74, 198, 1320, 1381, 1453, 1456, 1760 |
| BmcAI | AGTACT | 1 cut(s) | 1047 |
| Bme1390I | CCNGG | 7 cut(s) | 28, 143, 421, 436, 544, 885, 1313 |
| BmgBI | CACGTC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 3 cut(s) | 144, 1072, 1492 |
| BmiI | GGNNCC | 1 cut(s) | 1259 |
| BmrFI | CCNGG | 7 cut(s) | 28, 143, 421, 436, 544, 885, 1313 |
| BmrI | ACTGGG | 1 cut(s) | 198 |
| BmsI | GCATC | 6 cut(s) | 229, 346, 598, 840, 1132, 1348 |
| BmuI | ACTGGG | 1 cut(s) | 198 |
| BpmI | CTGGAG | 1 cut(s) | 829 |
| Bpu10I | CCTNAGC | 1 cut(s) | 113 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1638 |
| BpuEI | CTTGAG | 3 cut(s) | 464, 1613, 1733 |
| BpuMI | CCSGG | 5 cut(s) | 28, 143, 421, 436, 1313 |
| Bsa29I | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1215 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 697, 942 |
| BsaJI | CCNNGG | 7 cut(s) | 27, 414, 420, 543, 657, 1312, 1488 |
| BsaWI | WCCGGW | 2 cut(s) | 130, 865 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1241, 1271, 1463, 1493, 1526, 1556 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 420, 693, 803, 890, 985, 1169, 1594 |
| Bse1I | ACTGG | 4 cut(s) | 193, 253, 1212, 1374 |
| Bse3DI | GCAATG | 2 cut(s) | 996, 1143 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1215 |
| BseBI | CCWGG | 2 cut(s) | 544, 885 |
| BseCI | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BseDI | CCNNGG | 7 cut(s) | 27, 414, 420, 543, 657, 1312, 1488 |
| BseGI | GGATG | 3 cut(s) | 831, 1147, 1216 |
| BseJI | GATNNNNATC | 1 cut(s) | 1215 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 420, 693, 803, 890, 985, 1169, 1594 |
| BseMI | GCAATG | 2 cut(s) | 996, 1143 |
| BseMII | CTCAG | 6 cut(s) | 127, 345, 1063, 1404, 1590, 1629 |
| BseNI | ACTGG | 4 cut(s) | 193, 253, 1212, 1374 |
| BseRI | GAGGAG | 1 cut(s) | 1191 |
| BseSI | GKGCMC | 1 cut(s) | 1369 |
| BseXI | GCAGC | 5 cut(s) | 59, 1305, 1366, 1438, 1441 |
| BseYI | CCCAGC | 1 cut(s) | 1001 |
| Bsh1285I | CGRYCG | 1 cut(s) | 208 |
| BshFI | GGCC | 7 cut(s) | 14, 146, 220, 419, 449, 1074, 1493 |
| BshVI | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BsiEI | CGRYCG | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1369 |
| BsiSI | CCGG | 9 cut(s) | 27, 131, 142, 314, 420, 436, 866, 1241, 1312 |
| BslFI | GGGAC | 5 cut(s) | 525, 581, 929, 953, 1528 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 420, 693, 803, 890, 985, 1169, 1594 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsmFI | GGGAC | 5 cut(s) | 525, 581, 929, 953, 1528 |
| BsmI | GAATGC | 1 cut(s) | 1674 |
| BsnI | GGCC | 7 cut(s) | 14, 146, 220, 419, 449, 1074, 1493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1369 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1638 |
| BspACI | CCGC | 6 cut(s) | 11, 97, 196, 1186, 1396, 1588 |
| BspANI | GGCC | 7 cut(s) | 14, 146, 220, 419, 449, 1074, 1493 |
| BspCNI | CTCAG | 6 cut(s) | 126, 346, 1062, 1403, 1591, 1630 |
| BspDI | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BspHI | TCATGA | 1 cut(s) | 1665 |
| BspLI | GGNNCC | 1 cut(s) | 1259 |
| BspMAI | CTGCAG | 1 cut(s) | 77 |
| BspMI | ACCTGC | 2 cut(s) | 816, 1109 |
| BspPI | GGATC | 4 cut(s) | 713, 997, 1093, 1232 |
| BsrDI | GCAATG | 2 cut(s) | 996, 1143 |
| BsrI | ACTGG | 4 cut(s) | 193, 253, 1212, 1374 |
| BssECI | CCNNGG | 7 cut(s) | 27, 414, 420, 543, 657, 1312, 1488 |
| BssNI | GRCGYC | 3 cut(s) | 5, 697, 942 |
| BssT1I | CCWWGG | 2 cut(s) | 414, 657 |
| Bst2UI | CCWGG | 2 cut(s) | 544, 885 |
| Bst4CI | ACNGT | 5 cut(s) | 176, 375, 1108, 1288, 1755 |
| Bst6I | CTCTTC | 2 cut(s) | 802, 1686 |
| BstACI | GRCGYC | 3 cut(s) | 5, 697, 942 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1142 |
| BstC8I | GCNNGC | 5 cut(s) | 97, 297, 540, 918, 1728 |
| BstDEI | CTNAG | 6 cut(s) | 113, 354, 1049, 1390, 1599, 1638 |
| BstDSI | CCRYGG | 1 cut(s) | 1488 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 801 |
| BstF5I | GGATG | 3 cut(s) | 831, 1147, 1216 |
| BstHHI | GCGC | 1 cut(s) | 234 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMCI | CGRYCG | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 20, 296, 1142, 1648 |
| BstNI | CCWGG | 2 cut(s) | 544, 885 |
| BstSCI | CCNGG | 7 cut(s) | 26, 141, 419, 434, 542, 883, 1311 |
| BstSFI | CTRYAG | 3 cut(s) | 73, 678, 1284 |
| BstSLI | GKGCMC | 1 cut(s) | 1369 |
| BstV1I | GCAGC | 5 cut(s) | 59, 1305, 1366, 1438, 1441 |
| BstX2I | RGATCY | 3 cut(s) | 718, 1098, 1237 |
| BstYI | RGATCY | 3 cut(s) | 718, 1098, 1237 |
| Bsu15I | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BsuRI | GGCC | 7 cut(s) | 14, 146, 220, 419, 449, 1074, 1493 |
| BsuTUI | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| BtgI | CCRYGG | 1 cut(s) | 1488 |
| BtrI | CACGTC | 1 cut(s) | 515 |
| BtsCI | GGATG | 3 cut(s) | 831, 1147, 1216 |
| BtsI | GCAGTG | 1 cut(s) | 1649 |
| BtsIMutI | CAGTG | 8 cut(s) | 371, 450, 510, 1205, 1367, 1411, 1521, 1649 |
| BveI | ACCTGC | 2 cut(s) | 816, 1109 |
| Cac8I | GCNNGC | 5 cut(s) | 97, 297, 540, 918, 1728 |
| CciI | TCATGA | 1 cut(s) | 1665 |
| CfoI | GCGC | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 3 cut(s) | 144, 1072, 1492 |
| ClaI | ATCGAT | 4 cut(s) | 992, 1092, 1719, 1744 |
| CseI | GACGC | 2 cut(s) | 686, 1241 |
| CsiI | ACCWGGT | 1 cut(s) | 883 |
| Csp6I | GTAC | 2 cut(s) | 751, 1046 |
| CviAII | CATG | 5 cut(s) | 985, 1165, 1343, 1652, 1666 |
| CviQI | GTAC | 2 cut(s) | 751, 1046 |
| DdeI | CTNAG | 6 cut(s) | 113, 354, 1049, 1390, 1599, 1638 |
| Eam1104I | CTCTTC | 2 cut(s) | 802, 1686 |
| EarI | CTCTTC | 2 cut(s) | 802, 1686 |
| Eco130I | CCWWGG | 2 cut(s) | 414, 657 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco57I | CTGAAG | 2 cut(s) | 744, 1058 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 801 |
| EcoRI | GAATTC | 1 cut(s) | 211 |
| EcoRII | CCWGG | 2 cut(s) | 542, 883 |
| EcoT14I | CCWWGG | 2 cut(s) | 414, 657 |
| ErhI | CCWWGG | 2 cut(s) | 414, 657 |
| FaeI | CATG | 5 cut(s) | 988, 1168, 1346, 1655, 1669 |
| FaqI | GGGAC | 5 cut(s) | 525, 581, 929, 953, 1528 |
| FatI | CATG | 5 cut(s) | 984, 1164, 1342, 1651, 1665 |
| FauI | CCCGC | 1 cut(s) | 104 |
| FbaI | TGATCA | 1 cut(s) | 1276 |
| FblI | GTMKAC | 2 cut(s) | 37, 426 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 73, 197, 1319, 1380, 1452, 1455, 1759 |
| FokI | GGATG | 3 cut(s) | 818, 1154, 1223 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 73, 197, 1319, 1380, 1452, 1455, 1759 |
| FspBI | CTAG | 1 cut(s) | 1496 |
| GlaI | GCGC | 1 cut(s) | 233 |
| GluI | GCNGC | 8 cut(s) | 12, 73, 197, 1319, 1380, 1452, 1455, 1759 |
| GsaI | CCCAGC | 1 cut(s) | 1005 |
| GsuI | CTGGAG | 1 cut(s) | 829 |
| HaeIII | GGCC | 7 cut(s) | 14, 146, 220, 419, 449, 1074, 1493 |
| HapII | CCGG | 9 cut(s) | 27, 131, 142, 314, 420, 436, 866, 1241, 1312 |
| HgaI | GACGC | 2 cut(s) | 686, 1241 |
| HhaI | GCGC | 1 cut(s) | 234 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 697, 942 |
| Hin1II | CATG | 5 cut(s) | 988, 1168, 1346, 1655, 1669 |
| Hin6I | GCGC | 1 cut(s) | 232 |
| HinP1I | GCGC | 1 cut(s) | 232 |
| HincII | GTYRAC | 1 cut(s) | 427 |
| HindII | GTYRAC | 1 cut(s) | 427 |
| HindIII | AAGCTT | 3 cut(s) | 81, 788, 1566 |
| HpaII | CCGG | 9 cut(s) | 27, 131, 142, 314, 420, 436, 866, 1241, 1312 |
| HphI | GGTGA | 2 cut(s) | 500, 890 |
| Hpy166II | GTNNAC | 4 cut(s) | 38, 427, 881, 1367 |
| Hpy188III | TCNNGA | 5 cut(s) | 443, 722, 846, 1666, 1712 |
| Hpy8I | GTNNAC | 4 cut(s) | 38, 427, 881, 1367 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 230, 313, 405, 1204, 1257 |
| HpyAV | CCTTC | 6 cut(s) | 148, 252, 361, 719, 905, 1033 |
| HpyCH4III | ACNGT | 5 cut(s) | 176, 375, 1108, 1288, 1755 |
| HpyCH4IV | ACGT | 3 cut(s) | 514, 942, 1478 |
| HpyCH4V | TGCA | 9 cut(s) | 75, 831, 902, 934, 1136, 1339, 1367, 1382, 1758 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 20, 296, 1142, 1648 |
| HpyF3I | CTNAG | 6 cut(s) | 113, 354, 1049, 1390, 1599, 1638 |
| HpySE526I | ACGT | 3 cut(s) | 514, 942, 1478 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 697, 942 |
| Hsp92II | CATG | 5 cut(s) | 988, 1168, 1346, 1655, 1669 |
| HspAI | GCGC | 1 cut(s) | 232 |
| Ksp22I | TGATCA | 1 cut(s) | 1276 |
| LmnI | GCTCC | 4 cut(s) | 379, 586, 1249, 1648 |
| Lsp1109I | GCAGC | 5 cut(s) | 59, 1305, 1366, 1438, 1441 |
| LweI | GCATC | 6 cut(s) | 229, 346, 598, 840, 1132, 1348 |
| MabI | ACCWGGT | 1 cut(s) | 883 |
| MaeI | CTAG | 1 cut(s) | 1496 |
| MaeII | ACGT | 3 cut(s) | 514, 942, 1478 |
| MaeIII | GTNAC | 1 cut(s) | 1057 |
| MboII | GAAGA | 7 cut(s) | 38, 397, 486, 819, 861, 1304, 1703 |
| MflI | RGATCY | 3 cut(s) | 718, 1098, 1237 |
| MhlI | GDGCHC | 1 cut(s) | 1369 |
| MlyI | GAGTC | 6 cut(s) | 128, 160, 195, 563, 1356, 1663 |
| MmeI | TCCRAC | 4 cut(s) | 188, 357, 383, 871 |
| MnlI | CCTC | 9 cut(s) | 25, 122, 150, 210, 439, 1021, 1063, 1169, 1588 |
| MseI | TTAA | 6 cut(s) | 149, 653, 764, 971, 1157, 1613 |
| MspA1I | CMGCKG | 1 cut(s) | 1761 |
| MspI | CCGG | 9 cut(s) | 27, 131, 142, 314, 420, 436, 866, 1241, 1312 |
| MspR9I | CCNGG | 7 cut(s) | 28, 143, 421, 436, 544, 885, 1313 |
| Mva1269I | GAATGC | 1 cut(s) | 1674 |
| MvaI | CCWGG | 2 cut(s) | 544, 885 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 20, 296, 1142, 1648 |
| NciI | CCSGG | 5 cut(s) | 28, 143, 421, 436, 1313 |
| NlaIII | CATG | 5 cut(s) | 988, 1168, 1346, 1655, 1669 |
| NlaIV | GGNNCC | 1 cut(s) | 1259 |
| PagI | TCATGA | 1 cut(s) | 1665 |
| PaqCI | CACCTGC | 2 cut(s) | 816, 1109 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 14, 161, 1741 |
| PctI | GAATGC | 1 cut(s) | 1674 |
| PfeI | GAWTC | 6 cut(s) | 491, 532, 683, 927, 961, 1064 |
| PflFI | GACNNNGTC | 1 cut(s) | 204 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 890 |
| PkrI | GCNGC | 8 cut(s) | 13, 74, 198, 1320, 1381, 1453, 1456, 1760 |
| PleI | GAGTC | 6 cut(s) | 128, 160, 195, 563, 1355, 1663 |
| PpsI | GAGTC | 6 cut(s) | 128, 160, 195, 563, 1355, 1663 |
| Psp6I | CCWGG | 2 cut(s) | 542, 883 |
| PspFI | CCCAGC | 1 cut(s) | 1001 |
| PspGI | CCWGG | 2 cut(s) | 542, 883 |
| PspN4I | GGNNCC | 1 cut(s) | 1259 |
| PspPI | GGNCC | 3 cut(s) | 144, 1072, 1492 |
| PstI | CTGCAG | 1 cut(s) | 77 |
| PsuI | RGATCY | 3 cut(s) | 718, 1098, 1237 |
| PsyI | GACNNNGTC | 1 cut(s) | 204 |
| PvuII | CAGCTG | 1 cut(s) | 1761 |
| RsaI | GTAC | 2 cut(s) | 752, 1047 |
| RsaNI | GTAC | 2 cut(s) | 751, 1046 |
| SalI | GTCGAC | 1 cut(s) | 425 |
| SaqAI | TTAA | 6 cut(s) | 149, 653, 764, 971, 1157, 1613 |
| SatI | GCNGC | 8 cut(s) | 12, 73, 197, 1319, 1380, 1452, 1455, 1759 |
| Sau96I | GGNCC | 3 cut(s) | 144, 1072, 1492 |
| ScaI | AGTACT | 1 cut(s) | 1047 |
| SchI | GAGTC | 6 cut(s) | 128, 160, 195, 563, 1356, 1663 |
| ScrFI | CCNGG | 7 cut(s) | 28, 143, 421, 436, 544, 885, 1313 |
| SduI | GDGCHC | 1 cut(s) | 1369 |
| SexAI | ACCWGGT | 1 cut(s) | 883 |
| SfaNI | GCATC | 6 cut(s) | 229, 346, 598, 840, 1132, 1348 |
| SfcI | CTRYAG | 3 cut(s) | 73, 678, 1284 |
| SmlI | CTYRAG | 3 cut(s) | 443, 1592, 1712 |
| SmoI | CTYRAG | 3 cut(s) | 443, 1592, 1712 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SsiI | CCGC | 6 cut(s) | 11, 97, 196, 1186, 1396, 1588 |
| SspMI | CTAG | 1 cut(s) | 1496 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 7 cut(s) | 26, 141, 419, 434, 542, 883, 1311 |
| StyI | CCWWGG | 2 cut(s) | 414, 657 |
| TaaI | ACNGT | 5 cut(s) | 176, 375, 1108, 1288, 1755 |
| TaiI | ACGT | 3 cut(s) | 517, 945, 1481 |
| TaqI | TCGA | 9 cut(s) | 155, 164, 215, 426, 992, 1092, 1174, 1719, 1744 |
| TaqII | GACCGA | 2 cut(s) | 23, 194 |
| TatI | WGTACW | 1 cut(s) | 1045 |
| TauI | GCSGC | 2 cut(s) | 14, 199 |
| TfiI | GAWTC | 6 cut(s) | 491, 532, 683, 927, 961, 1064 |
| Tru1I | TTAA | 6 cut(s) | 149, 653, 764, 971, 1157, 1613 |
| Tru9I | TTAA | 6 cut(s) | 149, 653, 764, 971, 1157, 1613 |
| TscAI | CASTG | 8 cut(s) | 378, 457, 510, 1212, 1374, 1411, 1521, 1649 |
| TseI | GCWGC | 6 cut(s) | 72, 1318, 1379, 1451, 1454, 1758 |
| TspDTI | ATGAA | 6 cut(s) | 32, 831, 974, 1227, 1461, 1668 |
| TspGWI | ACGGA | 3 cut(s) | 76, 768, 1574 |
| TspRI | CASTG | 8 cut(s) | 378, 457, 510, 1212, 1374, 1411, 1521, 1649 |
| Tth111I | GACNNNGTC | 1 cut(s) | 204 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 890 |
| VneI | GTGCAC | 1 cut(s) | 1365 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 801 |
| XapI | RAATTY | 5 cut(s) | 211, 819, 837, 1022, 1353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1109 |
| XmiI | GTMKAC | 2 cut(s) | 37, 426 |
| XspI | CTAG | 1 cut(s) | 1496 |
| ZraI | GACGTC | 1 cut(s) | 943 |
| ZrmI | AGTACT | 1 cut(s) | 1047 |