TATA-binding protein-associated factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2464, 2513 |
| Acc16I | TGCGCA | 1 cut(s) | 981 |
| Acc36I | ACCTGC | 5 cut(s) | 973, 2464, 2513, 2617, 4711 |
| AccB1I | GGYRCC | 1 cut(s) | 3737 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3784, 3938 |
| AccI | GTMKAC | 4 cut(s) | 943, 1366, 2738, 3316 |
| AciI | CCGC | 7 cut(s) | 595, 1867, 2327, 2369, 2470, 4206, 4396 |
| AclI | AACGTT | 1 cut(s) | 4099 |
| AclWI | GGATC | 9 cut(s) | 2423, 2621, 3155, 3168, 3485, 3498, 3561, 4387, 4652 |
| AcoI | YGGCCR | 2 cut(s) | 1937, 3657 |
| AcsI | RAATTY | 7 cut(s) | 543, 690, 1178, 1736, 1981, 2007, 2575 |
| AcuI | CTGAAG | 6 cut(s) | 887, 1124, 1373, 3198, 3969, 4704 |
| AfaI | GTAC | 8 cut(s) | 660, 1269, 1425, 1927, 3525, 3900, 4033, 4280 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 506, 1830, 1873, 2473, 3716, 3717, 3784, 3938, 4632 |
| AflII | CTTAAG | 1 cut(s) | 3416 |
| AflIII | ACRYGT | 3 cut(s) | 2929, 3152, 4456 |
| AhlI | ACTAGT | 1 cut(s) | 625 |
| AjiI | CACGTC | 2 cut(s) | 2633, 4390 |
| AjnI | CCWGG | 7 cut(s) | 392, 741, 1318, 1482, 1674, 2551, 3516 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2822, 2854 |
| AleI | CACNNNNGTG | 1 cut(s) | 1816 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2598, 2630 |
| Alw21I | GWGCWC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| Alw26I | GTCTC | 5 cut(s) | 795, 913, 1071, 1249, 2944 |
| AlwI | GGATC | 9 cut(s) | 2423, 2621, 3155, 3168, 3485, 3498, 3561, 4387, 4652 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1517 |
| Ama87I | CYCGRG | 1 cut(s) | 2355 |
| ApoI | RAATTY | 7 cut(s) | 543, 690, 1178, 1736, 1981, 2007, 2575 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 428, 440, 460, 472 |
| AseI | ATTAAT | 2 cut(s) | 1769, 2784 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1182 |
| AspLEI | GCGC | 2 cut(s) | 982, 4335 |
| AspS9I | GGNCC | 9 cut(s) | 1021, 1060, 1080, 1459, 1489, 1821, 3922, 4260, 4569 |
| AsuC2I | CCSGG | 2 cut(s) | 1457, 4593 |
| AsuHPI | GGTGA | 5 cut(s) | 1577, 1967, 2072, 3565, 3640 |
| AsuII | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| AvaI | CYCGRG | 1 cut(s) | 2355 |
| AvaII | GGWCC | 5 cut(s) | 1021, 1080, 1459, 1489, 4569 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 891, 924, 4423, 4456 |
| BalI | TGGCCA | 2 cut(s) | 1939, 3659 |
| BamHI | GGATCC | 2 cut(s) | 3160, 3490 |
| BanI | GGYRCC | 1 cut(s) | 3737 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 958, 990, 3891, 3923 |
| BbsI | GAAGAC | 5 cut(s) | 279, 960, 1686, 1911, 2627 |
| Bbv12I | GWGCWC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| BbvCI | CCTCAGC | 2 cut(s) | 1540, 3066 |
| BceAI | ACGGC | 2 cut(s) | 1406, 1442 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2100, 2134 |
| BciT130I | CCWGG | 7 cut(s) | 394, 743, 1320, 1484, 1676, 2553, 3518 |
| BciVI | GTATCC | 2 cut(s) | 892, 1889 |
| BclI | TGATCA | 5 cut(s) | 643, 1249, 1341, 3853, 4461 |
| BcnI | CCSGG | 2 cut(s) | 1457, 4593 |
| BcoDI | GTCTC | 5 cut(s) | 795, 913, 1071, 1249, 2944 |
| BcuI | ACTAGT | 1 cut(s) | 625 |
| BfmI | CTRYAG | 4 cut(s) | 1518, 1581, 3183, 3447 |
| BfrI | CTTAAG | 1 cut(s) | 3416 |
| BfuAI | ACCTGC | 5 cut(s) | 973, 2464, 2513, 2617, 4711 |
| BfuI | GTATCC | 2 cut(s) | 892, 1889 |
| BglII | AGATCT | 1 cut(s) | 3220 |
| BlpI | GCTNAGC | 2 cut(s) | 618, 2646 |
| BmcAI | AGTACT | 1 cut(s) | 1927 |
| Bme1390I | CCNGG | 9 cut(s) | 394, 743, 1320, 1457, 1484, 1676, 2553, 3518, 4593 |
| Bme18I | GGWCC | 5 cut(s) | 1021, 1080, 1459, 1489, 4569 |
| BmeT110I | CYCGRG | 1 cut(s) | 2355 |
| BmgBI | CACGTC | 2 cut(s) | 2633, 4390 |
| BmgT120I | GGNCC | 9 cut(s) | 1021, 1060, 1080, 1459, 1489, 1821, 3922, 4260, 4569 |
| BmrFI | CCNGG | 9 cut(s) | 394, 743, 1320, 1457, 1484, 1676, 2553, 3518, 4593 |
| BpiI | GAAGAC | 5 cut(s) | 279, 960, 1686, 1911, 2627 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3862, 3894 |
| BpmI | CTGGAG | 7 cut(s) | 738, 1248, 1505, 1779, 2562, 3943, 4007 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1540, 3066 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 618, 2646 |
| Bpu14I | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| BpuEI | CTTGAG | 3 cut(s) | 1269, 3358, 4311 |
| BpuMI | CCSGG | 2 cut(s) | 1457, 4593 |
| Bsa29I | ATCGAT | 1 cut(s) | 159 |
| BsaAI | YACGTR | 2 cut(s) | 1271, 3104 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3852 |
| BsaI | GGTCTC | 1 cut(s) | 913 |
| BsaJI | CCNNGG | 9 cut(s) | 173, 392, 393, 664, 1674, 1691, 1811, 3778, 4674 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1227, 1257, 3909, 3939 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 506, 1830, 1873, 2473, 3716, 3717, 3784, 3938, 4632 |
| Bse1I | ACTGG | 7 cut(s) | 442, 1063, 1152, 1265, 1762, 3250, 4647 |
| Bse3DI | GCAATG | 4 cut(s) | 59, 759, 4335, 4709 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3852 |
| BseBI | CCWGG | 7 cut(s) | 394, 743, 1320, 1484, 1676, 2553, 3518 |
| BseCI | ATCGAT | 1 cut(s) | 159 |
| BseDI | CCNNGG | 9 cut(s) | 173, 392, 393, 664, 1674, 1691, 1811, 3778, 4674 |
| BseGI | GGATG | 9 cut(s) | 253, 469, 1102, 1315, 1624, 1631, 2335, 2976, 4684 |
| BseJI | GATNNNNATC | 1 cut(s) | 3852 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 506, 1830, 1873, 2473, 3716, 3717, 3784, 3938, 4632 |
| BseMI | GCAATG | 4 cut(s) | 59, 759, 4335, 4709 |
| BseNI | ACTGG | 7 cut(s) | 442, 1063, 1152, 1265, 1762, 3250, 4647 |
| BseRI | GAGGAG | 1 cut(s) | 4727 |
| BseYI | CCCAGC | 2 cut(s) | 4, 4512 |
| BsgI | GTGCAG | 1 cut(s) | 3771 |
| BshNI | GGYRCC | 1 cut(s) | 3737 |
| BshVI | ATCGAT | 1 cut(s) | 159 |
| BsiHKAI | GWGCWC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2355 |
| BsiSI | CCGG | 2 cut(s) | 1456, 4593 |
| BsiWI | CGTACG | 1 cut(s) | 1423 |
| BslFI | GGGAC | 8 cut(s) | 146, 319, 375, 544, 3250, 3421, 3809, 4555 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 506, 1830, 1873, 2473, 3716, 3717, 3784, 3938, 4632 |
| BsmAI | GTCTC | 5 cut(s) | 795, 913, 1071, 1249, 2944 |
| BsmFI | GGGAC | 8 cut(s) | 146, 319, 375, 544, 3250, 3421, 3809, 4555 |
| BsmI | GAATGC | 4 cut(s) | 1156, 1576, 2612, 4474 |
| Bso31I | GGTCTC | 1 cut(s) | 913 |
| BsoBI | CYCGRG | 1 cut(s) | 2355 |
| Bsp119I | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| Bsp1286I | GDGCHC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 618, 2646 |
| Bsp19I | CCATGG | 1 cut(s) | 664 |
| BspACI | CCGC | 7 cut(s) | 595, 1867, 2327, 2369, 2470, 4206, 4396 |
| BspDI | ATCGAT | 1 cut(s) | 159 |
| BspHI | TCATGA | 2 cut(s) | 562, 1330 |
| BspMAI | CTGCAG | 3 cut(s) | 1522, 3187, 3451 |
| BspMI | ACCTGC | 5 cut(s) | 973, 2464, 2513, 2617, 4711 |
| BspPI | GGATC | 9 cut(s) | 2423, 2621, 3155, 3168, 3485, 3498, 3561, 4387, 4652 |
| BspT104I | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| BspT107I | GGYRCC | 1 cut(s) | 3737 |
| BspTI | CTTAAG | 1 cut(s) | 3416 |
| BspTNI | GGTCTC | 1 cut(s) | 913 |
| BsrDI | GCAATG | 4 cut(s) | 59, 759, 4335, 4709 |
| BsrI | ACTGG | 7 cut(s) | 442, 1063, 1152, 1265, 1762, 3250, 4647 |
| BssECI | CCNNGG | 9 cut(s) | 173, 392, 393, 664, 1674, 1691, 1811, 3778, 4674 |
| BssNAI | GTATAC | 1 cut(s) | 944 |
| BssT1I | CCWWGG | 5 cut(s) | 173, 664, 1691, 3778, 4674 |
| Bst1107I | GTATAC | 1 cut(s) | 944 |
| Bst2UI | CCWGG | 7 cut(s) | 394, 743, 1320, 1484, 1676, 2553, 3518 |
| Bst4CI | ACNGT | 6 cut(s) | 959, 1229, 1815, 2938, 3095, 3884 |
| Bst6I | CTCTTC | 6 cut(s) | 791, 916, 1100, 2947, 3834, 3909 |
| BstAFI | CTTAAG | 1 cut(s) | 3416 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1435, 1517, 4726 |
| BstBAI | YACGTR | 2 cut(s) | 1271, 3104 |
| BstBI | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| BstC8I | GCNNGC | 6 cut(s) | 66, 1467, 1480, 2599, 3754, 3758 |
| BstDSI | CCRYGG | 2 cut(s) | 664, 1811 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1828 |
| BstF5I | GGATG | 9 cut(s) | 253, 469, 1102, 1315, 1624, 1631, 2335, 2976, 4684 |
| BstHHI | GCGC | 2 cut(s) | 982, 4335 |
| BstMAI | GTCTC | 5 cut(s) | 795, 913, 1071, 1249, 2944 |
| BstNI | CCWGG | 7 cut(s) | 394, 743, 1320, 1484, 1676, 2553, 3518 |
| BstNSI | RCATGY | 9 cut(s) | 516, 1315, 1473, 2601, 2933, 3156, 3680, 3760, 4460 |
| BstSCI | CCNGG | 9 cut(s) | 392, 741, 1318, 1455, 1482, 1674, 2551, 3516, 4591 |
| BstSFI | CTRYAG | 4 cut(s) | 1518, 1581, 3183, 3447 |
| BstV2I | GAAGAC | 5 cut(s) | 279, 960, 1686, 1911, 2627 |
| BstX2I | RGATCY | 5 cut(s) | 3160, 3220, 3490, 3553, 4657 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1818, 3393, 3667, 4316 |
| BstYI | RGATCY | 5 cut(s) | 3160, 3220, 3490, 3553, 4657 |
| BstZ17I | GTATAC | 1 cut(s) | 944 |
| Bsu15I | ATCGAT | 1 cut(s) | 159 |
| BsuI | GTATCC | 2 cut(s) | 892, 1889 |
| BsuTUI | ATCGAT | 1 cut(s) | 159 |
| BtgI | CCRYGG | 2 cut(s) | 664, 1811 |
| BtgZI | GCGATG | 1 cut(s) | 4715 |
| BtrI | CACGTC | 2 cut(s) | 2633, 4390 |
| BtsCI | GGATG | 9 cut(s) | 253, 469, 1102, 1315, 1624, 1631, 2335, 2976, 4684 |
| BtsI | GCAGTG | 1 cut(s) | 1367 |
| BtsIMutI | CAGTG | 9 cut(s) | 964, 1367, 2054, 2432, 3091, 3405, 4049, 4500, 4640 |
| BveI | ACCTGC | 5 cut(s) | 973, 2464, 2513, 2617, 4711 |
| Cac8I | GCNNGC | 6 cut(s) | 66, 1467, 1480, 2599, 3754, 3758 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1517 |
| CciI | TCATGA | 2 cut(s) | 562, 1330 |
| CfoI | GCGC | 2 cut(s) | 982, 4335 |
| Cfr13I | GGNCC | 9 cut(s) | 1021, 1060, 1080, 1459, 1489, 1821, 3922, 4260, 4569 |
| ClaI | ATCGAT | 1 cut(s) | 159 |
| Csp6I | GTAC | 8 cut(s) | 659, 1268, 1424, 1926, 3524, 3899, 4032, 4279 |
| CviQI | GTAC | 8 cut(s) | 659, 1268, 1424, 1926, 3524, 3899, 4032, 4279 |
| DraI | TTTAAA | 6 cut(s) | 411, 1560, 1731, 2188, 2907, 4095 |
| EaeI | YGGCCR | 2 cut(s) | 1937, 3657 |
| Eam1104I | CTCTTC | 6 cut(s) | 791, 916, 1100, 2947, 3834, 3909 |
| EarI | CTCTTC | 6 cut(s) | 791, 916, 1100, 2947, 3834, 3909 |
| Eco130I | CCWWGG | 5 cut(s) | 173, 664, 1691, 3778, 4674 |
| Eco31I | GGTCTC | 1 cut(s) | 913 |
| Eco32I | GATATC | 1 cut(s) | 11 |
| Eco47I | GGWCC | 5 cut(s) | 1021, 1080, 1459, 1489, 4569 |
| Eco57I | CTGAAG | 6 cut(s) | 887, 1124, 1373, 3198, 3969, 4704 |
| Eco88I | CYCGRG | 1 cut(s) | 2355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1828 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1080, 1459, 1489, 3922 |
| EcoRI | GAATTC | 1 cut(s) | 1178 |
| EcoRII | CCWGG | 7 cut(s) | 392, 741, 1318, 1482, 1674, 2551, 3516 |
| EcoRV | GATATC | 1 cut(s) | 11 |
| EcoT14I | CCWWGG | 5 cut(s) | 173, 664, 1691, 3778, 4674 |
| EcoT22I | ATGCAT | 3 cut(s) | 1317, 3647, 3678 |
| ErhI | CCWWGG | 5 cut(s) | 173, 664, 1691, 3778, 4674 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1067, 1099, 4473, 4505 |
| FaqI | GGGAC | 8 cut(s) | 146, 319, 375, 544, 3250, 3421, 3809, 4555 |
| FauNDI | CATATG | 2 cut(s) | 3805, 4384 |
| FbaI | TGATCA | 5 cut(s) | 643, 1249, 1341, 3853, 4461 |
| FblI | GTMKAC | 4 cut(s) | 943, 1366, 2738, 3316 |
| FokI | GGATG | 9 cut(s) | 260, 476, 1109, 1302, 1618, 1631, 2342, 2983, 4691 |
| FspI | TGCGCA | 1 cut(s) | 981 |
| GlaI | GCGC | 2 cut(s) | 981, 4334 |
| GsaI | CCCAGC | 2 cut(s) | 8, 4516 |
| GsuI | CTGGAG | 7 cut(s) | 738, 1248, 1505, 1779, 2562, 3943, 4007 |
| HapII | CCGG | 2 cut(s) | 1456, 4593 |
| HhaI | GCGC | 2 cut(s) | 982, 4335 |
| Hin6I | GCGC | 2 cut(s) | 980, 4333 |
| HinP1I | GCGC | 2 cut(s) | 980, 4333 |
| HincII | GTYRAC | 1 cut(s) | 995 |
| HindII | GTYRAC | 1 cut(s) | 995 |
| HindIII | AAGCTT | 6 cut(s) | 81, 610, 2216, 4025, 4106, 4421 |
| HpaII | CCGG | 2 cut(s) | 1456, 4593 |
| HphI | GGTGA | 5 cut(s) | 1577, 1967, 2072, 3565, 3640 |
| Hpy166II | GTNNAC | 7 cut(s) | 944, 995, 1021, 1367, 2739, 2773, 3317 |
| Hpy8I | GTNNAC | 7 cut(s) | 944, 995, 1021, 1367, 2739, 2773, 3317 |
| Hpy99I | CGWCG | 1 cut(s) | 4746 |
| HpyCH4III | ACNGT | 6 cut(s) | 959, 1229, 1815, 2938, 3095, 3884 |
| HpyCH4IV | ACGT | 9 cut(s) | 1270, 1871, 2632, 2660, 2769, 3103, 3526, 4099, 4389 |
| HpySE526I | ACGT | 9 cut(s) | 1270, 1871, 2632, 2660, 2769, 3103, 3526, 4099, 4389 |
| HspAI | GCGC | 2 cut(s) | 980, 4333 |
| Ksp22I | TGATCA | 5 cut(s) | 643, 1249, 1341, 3853, 4461 |
| MaeII | ACGT | 9 cut(s) | 1270, 1871, 2632, 2660, 2769, 3103, 3526, 4099, 4389 |
| MfeI | CAATTG | 1 cut(s) | 4502 |
| MflI | RGATCY | 5 cut(s) | 3160, 3220, 3490, 3553, 4657 |
| MhlI | GDGCHC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| MlsI | TGGCCA | 2 cut(s) | 1939, 3659 |
| MluNI | TGGCCA | 2 cut(s) | 1939, 3659 |
| MlyI | GAGTC | 7 cut(s) | 515, 1925, 2188, 2237, 2341, 2876, 3871 |
| MmeI | TCCRAC | 5 cut(s) | 1854, 2229, 2565, 3919, 4231 |
| Mox20I | TGGCCA | 2 cut(s) | 1939, 3659 |
| Mph1103I | ATGCAT | 3 cut(s) | 1317, 3647, 3678 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1182 |
| MscI | TGGCCA | 2 cut(s) | 1939, 3659 |
| Msp20I | TGGCCA | 2 cut(s) | 1939, 3659 |
| MspA1I | CMGCKG | 3 cut(s) | 1544, 2470, 3065 |
| MspCI | CTTAAG | 1 cut(s) | 3416 |
| MspI | CCGG | 2 cut(s) | 1456, 4593 |
| MspR9I | CCNGG | 9 cut(s) | 394, 743, 1320, 1457, 1484, 1676, 2553, 3518, 4593 |
| MunI | CAATTG | 1 cut(s) | 4502 |
| Mva1269I | GAATGC | 4 cut(s) | 1156, 1576, 2612, 4474 |
| MvaI | CCWGG | 7 cut(s) | 394, 743, 1320, 1484, 1676, 2553, 3518 |
| NciI | CCSGG | 2 cut(s) | 1457, 4593 |
| NcoI | CCATGG | 1 cut(s) | 664 |
| NdeI | CATATG | 2 cut(s) | 3805, 4384 |
| NmuCI | GTSAC | 5 cut(s) | 1218, 2060, 2344, 3874, 4045 |
| NsbI | TGCGCA | 1 cut(s) | 981 |
| NsiI | ATGCAT | 3 cut(s) | 1317, 3647, 3678 |
| NspI | RCATGY | 9 cut(s) | 516, 1315, 1473, 2601, 2933, 3156, 3680, 3760, 4460 |
| NspV | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| OliI | CACNNNNGTG | 1 cut(s) | 1816 |
| PacI | TTAATTAA | 1 cut(s) | 3132 |
| PaeI | GCATGC | 2 cut(s) | 2601, 3760 |
| PagI | TCATGA | 2 cut(s) | 562, 1330 |
| PaqCI | CACCTGC | 2 cut(s) | 2464, 2513 |
| PasI | CCCWGGG | 1 cut(s) | 393 |
| PciI | ACATGT | 3 cut(s) | 2929, 3152, 4456 |
| PctI | GAATGC | 4 cut(s) | 1156, 1576, 2612, 4474 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1182 |
| Pfl23II | CGTACG | 1 cut(s) | 1423 |
| PflFI | GACNNNGTC | 1 cut(s) | 1457 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3784, 3938 |
| PleI | GAGTC | 7 cut(s) | 515, 1924, 2187, 2236, 2341, 2875, 3871 |
| PpsI | GAGTC | 7 cut(s) | 515, 1924, 2187, 2236, 2341, 2875, 3871 |
| Ppu21I | YACGTR | 2 cut(s) | 1271, 3104 |
| PpuMI | RGGWCCY | 3 cut(s) | 1080, 1459, 1489 |
| PscI | ACATGT | 3 cut(s) | 2929, 3152, 4456 |
| PshBI | ATTAAT | 2 cut(s) | 1769, 2784 |
| Psp1406I | AACGTT | 1 cut(s) | 4099 |
| Psp5II | RGGWCCY | 3 cut(s) | 1080, 1459, 1489 |
| Psp6I | CCWGG | 7 cut(s) | 392, 741, 1318, 1482, 1674, 2551, 3516 |
| PspFI | CCCAGC | 2 cut(s) | 4, 4512 |
| PspGI | CCWGG | 7 cut(s) | 392, 741, 1318, 1482, 1674, 2551, 3516 |
| PspLI | CGTACG | 1 cut(s) | 1423 |
| PspPI | GGNCC | 9 cut(s) | 1021, 1060, 1080, 1459, 1489, 1821, 3922, 4260, 4569 |
| PspPPI | RGGWCCY | 3 cut(s) | 1080, 1459, 1489 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2659, 2691, 3307, 3339 |
| PstI | CTGCAG | 3 cut(s) | 1522, 3187, 3451 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1517 |
| PsuI | RGATCY | 5 cut(s) | 3160, 3220, 3490, 3553, 4657 |
| PsyI | GACNNNGTC | 1 cut(s) | 1457 |
| PvuII | CAGCTG | 2 cut(s) | 1544, 3065 |
| RsaI | GTAC | 8 cut(s) | 660, 1269, 1425, 1927, 3525, 3900, 4033, 4280 |
| RsaNI | GTAC | 8 cut(s) | 659, 1268, 1424, 1926, 3524, 3899, 4032, 4279 |
| Sau96I | GGNCC | 9 cut(s) | 1021, 1060, 1080, 1459, 1489, 1821, 3922, 4260, 4569 |
| ScaI | AGTACT | 1 cut(s) | 1927 |
| SchI | GAGTC | 7 cut(s) | 515, 1925, 2188, 2237, 2341, 2876, 3871 |
| ScrFI | CCNGG | 9 cut(s) | 394, 743, 1320, 1457, 1484, 1676, 2553, 3518, 4593 |
| SduI | GDGCHC | 5 cut(s) | 117, 490, 1285, 4670, 4696 |
| SfcI | CTRYAG | 4 cut(s) | 1518, 1581, 3183, 3447 |
| SfuI | TTCGAA | 4 cut(s) | 55, 434, 2258, 4199 |
| SinI | GGWCC | 5 cut(s) | 1021, 1080, 1459, 1489, 4569 |
| SmlI | CTYRAG | 4 cut(s) | 1284, 3337, 3416, 4326 |
| SmoI | CTYRAG | 4 cut(s) | 1284, 3337, 3416, 4326 |
| SpeI | ACTAGT | 1 cut(s) | 625 |
| SphI | GCATGC | 2 cut(s) | 2601, 3760 |
| SsiI | CCGC | 7 cut(s) | 595, 1867, 2327, 2369, 2470, 4206, 4396 |
| SspI | AATATT | 1 cut(s) | 337 |
| StyD4I | CCNGG | 9 cut(s) | 392, 741, 1318, 1455, 1482, 1674, 2551, 3516, 4591 |
| StyI | CCWWGG | 5 cut(s) | 173, 664, 1691, 3778, 4674 |
| TaaI | ACNGT | 6 cut(s) | 959, 1229, 1815, 2938, 3095, 3884 |
| TaiI | ACGT | 9 cut(s) | 1273, 1874, 2635, 2663, 2772, 3106, 3529, 4102, 4392 |
| TatI | WGTACW | 3 cut(s) | 1925, 4031, 4278 |
| TauI | GCSGC | 3 cut(s) | 2372, 2473, 4209 |
| TscAI | CASTG | 9 cut(s) | 964, 1367, 2054, 2439, 3098, 3412, 4056, 4500, 4647 |
| TseFI | GTSAC | 5 cut(s) | 1218, 2060, 2344, 3874, 4045 |
| Tsp45I | GTSAC | 5 cut(s) | 1218, 2060, 2344, 3874, 4045 |
| TspGWI | ACGGA | 2 cut(s) | 4282, 4730 |
| TspRI | CASTG | 9 cut(s) | 964, 1367, 2054, 2439, 3098, 3412, 4056, 4500, 4647 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1457 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3784, 3938 |
| Vha464I | CTTAAG | 1 cut(s) | 3416 |
| VpaK11BI | GGWCC | 5 cut(s) | 1021, 1080, 1459, 1489, 4569 |
| VspI | ATTAAT | 2 cut(s) | 1769, 2784 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1828 |
| XapI | RAATTY | 7 cut(s) | 543, 690, 1178, 1736, 1981, 2007, 2575 |
| XbaI | TCTAGA | 2 cut(s) | 2393, 3638 |
| XceI | RCATGY | 9 cut(s) | 516, 1315, 1473, 2601, 2933, 3156, 3680, 3760, 4460 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2752, 4628 |
| XmiI | GTMKAC | 4 cut(s) | 943, 1366, 2738, 3316 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1182 |
| ZrmI | AGTACT | 1 cut(s) | 1927 |
| Zsp2I | ATGCAT | 3 cut(s) | 1317, 3647, 3678 |