Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

220603 .. 222901

Gene Structure 2299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTTTGGCTTCAACAAGTCACCTGTCTCTCTGTTCTTCACCGCCATTGCCACCAACAAGTGCTTTGACCAAGCAGCAGAACAAGTACCACCCACTTATGTTTTCTCCGACCAAGAATTTCTCTGGTCTGAGCACTTCAAGCTGTTTTATCAACACCCATTTGGTAAGACTGTCTGTTTTCGTCGTAAAAGCATCGGAAACTGAGTCGAAACCAGCAGAGAGTGGAAGTGAAGGAGGAGGAGAGGAAAAAGGAAAACCAGAAGCATATGAAGAGTATGAGGTGGAACTGGTGCAGCCTTACGGGCTGAAATTCTCCAAGGGCCGAGACGGCGGAACTTACATTGATGCCATTGCGCCCGGTGGATTTGCTGACAAAACTGGCAAGTTCACCGTTGGCGATAAAGTTGTTGCCACAAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTGCCGAGTATGGGAGGACAATGTACACCATTCGCCAGAGGATCGGTCCACTTCTCATGCGAATGCAGAAGAGATACGGCAATTTAGATACTTCAGGTGAATTAACAGAAAAGGAGATTATCAGAGCTGAGAGGAATTCTGGTGTAATTAGCGGAAGATTGAGGGATATCCAAATGCAAAACTACCTGAGGAAAAAGGAACAAAAGGCGCAGAGAGAAAGTGACCTTCGACAAGGCCTCCAGCTTTATAAGGGCGGGAAATATGAGGAAGCATTGGAGAAATTTGAATCTGTGCTAGGATCAAAACCTGAGTTAGATGAAGCTTCAGTGGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGATACAAGCTGGGATCTCTGCACTTGAGGATGCCCTGAAAGCTGGATTTGAAGACTTCAAGAGAATTCGGACTGATCCTGACCTGGAGAATGTAAGAAAAGCTGAGGCTTTTGATCCTCTATTGAAAAGATTTGACGAATCATTCATCAACGAAAATGCCATCAACGCCATAAAATCTATATTTGGCATTTTCGACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.72

Weight (kDa)

6.87

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AciI	CCGC	4 cut(s)	44, 333, 600, 702
AclWI	GGATC	5 cut(s)	497, 754, 839, 887, 926
AcsI	RAATTY	5 cut(s)	118, 311, 583, 728, 882
AcuI	CTGAAG	2 cut(s)	525, 756
AfaI	GTAC	2 cut(s)	89, 473
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	15, 141, 734, 869, 877, 943
AjnI	CCWGG	1 cut(s)	900
AluBI	AGCT	8 cut(s)	144, 575, 691, 770, 811, 827, 860, 920
AluI	AGCT	8 cut(s)	144, 575, 691, 770, 811, 827, 860, 920
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	2 cut(s)	33, 321
AlwI	GGATC	5 cut(s)	497, 754, 839, 887, 926
AoxI	GGCC	3 cut(s)	322, 443, 682
ApeKI	GCWGC	3 cut(s)	76, 295, 449
ApoI	RAATTY	5 cut(s)	118, 311, 583, 728, 882
AspLEI	GCGC	2 cut(s)	358, 658
AspS9I	GGNCC	2 cut(s)	322, 494
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	4 cut(s)	14, 33, 382, 557
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	3 cut(s)	88, 307, 436
BccI	CCATC	1 cut(s)	986
BceAI	ACGGC	2 cut(s)	346, 541
BciT130I	CCWGG	1 cut(s)	902
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	33, 321
BfaI	CTAG	1 cut(s)	743
BglI	GCCNNNNNGGC	2 cut(s)	304, 330
BisI	GCNGC	3 cut(s)	77, 296, 450
BlsI	GCNGC	3 cut(s)	78, 297, 451
Bme1390I	CCNGG	2 cut(s)	360, 902
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	322, 494
BmrFI	CCNGG	2 cut(s)	360, 902
BmsI	GCATC	3 cut(s)	203, 337, 838
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	2 cut(s)	671, 923
Bpu10I	CCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	294, 385
Bse21I	CCTNAGG	1 cut(s)	635
Bse3DI	GCAATG	2 cut(s)	47, 351
BseBI	CCWGG	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	439, 853
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	47, 351
BseMII	CTCAG	6 cut(s)	122, 195, 567, 626, 747, 912
BseNI	ACTGG	2 cut(s)	294, 385
BseRI	GAGGAG	2 cut(s)	252, 255
BseXI	GCAGC	3 cut(s)	88, 307, 436
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	3 cut(s)	314, 441, 822
BshFI	GGCC	3 cut(s)	324, 445, 684
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	33, 321
BsmBI	CGTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	3 cut(s)	324, 445, 684
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	5 cut(s)	489, 746, 831, 892, 931
BspACI	CCGC	4 cut(s)	44, 333, 600, 702
BspANI	GGCC	3 cut(s)	324, 445, 684
BspCNI	CTCAG	6 cut(s)	123, 196, 568, 627, 748, 913
BspPI	GGATC	5 cut(s)	497, 754, 839, 887, 926
BsrDI	GCAATG	2 cut(s)	47, 351
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	294, 385
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	489, 746, 831, 892, 931
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	902
Bst4CI	ACNGT	2 cut(s)	174, 394
Bst6I	CTCTTC	2 cut(s)	267, 512
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	7 cut(s)	131, 204, 576, 635, 756, 807, 921
BstF5I	GGATG	2 cut(s)	439, 853
BstHHI	GCGC	2 cut(s)	358, 658
BstKTI	GATC	5 cut(s)	492, 749, 834, 895, 934
BstMAI	GTCTC	2 cut(s)	33, 321
BstMBI	GATC	5 cut(s)	489, 746, 831, 892, 931
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 304, 330, 419, 776, 857, 983
BstNI	CCWGG	1 cut(s)	902
BstSCI	CCNGG	2 cut(s)	358, 900
BstV1I	GCAGC	3 cut(s)	88, 307, 436
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	324, 445, 684
BtsCI	GGATG	2 cut(s)	439, 853
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	358, 658
Cfr13I	GGNCC	2 cut(s)	322, 494
Csp6I	GTAC	2 cut(s)	88, 472
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	2 cut(s)	88, 472
DdeI	CTNAG	7 cut(s)	131, 204, 576, 635, 756, 807, 921
DpnI	GATC	5 cut(s)	491, 748, 833, 894, 933
DpnII	GATC	5 cut(s)	489, 746, 831, 892, 931
Eam1104I	CTCTTC	2 cut(s)	267, 512
EarI	CTCTTC	2 cut(s)	267, 512
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	525, 756
Eco81I	CCTNAGG	1 cut(s)	635
EcoRI	GAATTC	2 cut(s)	583, 882
EcoRII	CCWGG	1 cut(s)	900
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	1 cut(s)	508
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	695
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	77, 296, 450
FokI	GGATG	2 cut(s)	446, 860
Fsp4HI	GCNGC	3 cut(s)	77, 296, 450
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	2 cut(s)	357, 657
GluI	GCNGC	3 cut(s)	77, 296, 450
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	2 cut(s)	671, 923
HaeIII	GGCC	3 cut(s)	324, 445, 684
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	2 cut(s)	358, 658
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	356, 656
HinP1I	GCGC	2 cut(s)	356, 656
HindIII	AAGCTT	2 cut(s)	768, 809
HinfI	GANTC	3 cut(s)	206, 734, 956
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	4 cut(s)	14, 33, 382, 557
Hpy166II	GTNNAC	3 cut(s)	390, 474, 497
Hpy188I	TCNGA	6 cut(s)	111, 132, 199, 572, 819, 888
Hpy188III	TCNNGA	2 cut(s)	877, 896
Hpy8I	GTNNAC	3 cut(s)	390, 474, 497
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	227, 683
HpyCH4III	ACNGT	2 cut(s)	174, 394
HpyCH4V	TGCA	5 cut(s)	295, 422, 514, 625, 839
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 304, 330, 419, 776, 857, 983
HpyF3I	CTNAG	7 cut(s)	131, 204, 576, 635, 756, 807, 921
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	356, 656
Kzo9I	GATC	5 cut(s)	489, 746, 831, 892, 931
Lsp1109I	GCAGC	3 cut(s)	88, 307, 436
LweI	GCATC	3 cut(s)	203, 337, 838
MaeI	CTAG	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	20, 668, 782
MalI	GATC	5 cut(s)	491, 748, 833, 894, 933
MboI	GATC	5 cut(s)	489, 746, 831, 892, 931
MboII	GAAGA	5 cut(s)	30, 284, 529, 615, 881
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	8 cut(s)	118, 311, 529, 548, 583, 594, 728, 882
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	134
MseI	TTAA	2 cut(s)	551, 813
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	360, 902
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	902
MwoI	GCNNNNNNNGC	7 cut(s)	141, 304, 330, 419, 776, 857, 983
NciI	CCSGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	5 cut(s)	489, 746, 831, 892, 931
NlaIII	CATG	1 cut(s)	508
NmeAIII	GCCGAG	2 cut(s)	350, 478
NmuCI	GTSAC	2 cut(s)	20, 668
PceI	AGGCCT	1 cut(s)	684
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	734, 956
PkrI	GCNGC	3 cut(s)	78, 297, 451
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	900
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	900
PspPI	GGNCC	2 cut(s)	322, 494
PsuI	RGATCY	1 cut(s)	831
RsaI	GTAC	2 cut(s)	89, 473
RsaNI	GTAC	2 cut(s)	88, 472
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	551, 813
SatI	GCNGC	3 cut(s)	77, 296, 450
Sau3AI	GATC	5 cut(s)	489, 746, 831, 892, 931
Sau96I	GGNCC	2 cut(s)	322, 494
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	360, 902
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	203, 337, 838
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	8 cut(s)	118, 311, 529, 548, 583, 594, 728, 882
SseBI	AGGCCT	1 cut(s)	684
SsiI	CCGC	4 cut(s)	44, 333, 600, 702
SspMI	CTAG	1 cut(s)	743
StuI	AGGCCT	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	358, 900
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	174, 394
TaqI	TCGA	3 cut(s)	209, 676, 1011
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	8 cut(s)	118, 311, 529, 548, 583, 594, 728, 882
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	734, 956
Tru1I	TTAA	2 cut(s)	551, 813
Tru9I	TTAA	2 cut(s)	551, 813
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	2 cut(s)	20, 668
TseI	GCWGC	3 cut(s)	76, 295, 449
Tsp45I	GTSAC	2 cut(s)	20, 668
TspDTI	ATGAA	4 cut(s)	285, 450, 780, 952
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	5 cut(s)	118, 311, 583, 728, 882
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.