Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008630

Physical Location & Seq

Genomic Coordinates Forward (+)

1984939 .. 1989213

Gene Structure 4275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATTCTCAGGTGTTGGTGGCTCTCGCGCTCTCACTCGTGGGTGGACTCAGTACTTCACTCGGTGCGCTTTTTGTAATTGTCAATGAAACTCCTAATTTGAAGAAGCTCGGGCTTTTACAGGGTTTTGCCGCAGGTCTGATGCTAAGCATATCATTCCTAGATTTGGCTCACAACGCTATAAACTCAATTGGCTTTTTAAAAGCCAACCTATGGTTTTTTGGAGGTGTCATATTCTTTGCTATCATTGCCAATTTTATCCCAGAACCAACTCTTGCTCCTATTTCAAAGAAAAGTGGAGATGAAGGAGGCAAGGACACTTTGAAAAAGCATCGACGTCAAGTTTTATTCAGTGGGATAGTAACAGCAATAGGCATAAGTTTACACAATTTTCCGGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGGTGTCAACTTGGCCTTGGCCATTGCCTTACACAACATCCCAGAGGGCGTTGCTGTGGCACTTCCTGTGTACTTTGCAACTCAGAGCAAATGGCAGGCATTCAAATTAGCAACGCTTTCTGGTTTCGCTGAGCCTTTGGGTGTCGTAATTGTAGCCTATCTATTTCCGAGCAGCTTGAGTCCTGAAATTCTTGAAGGCCTGCTGGGATCAGTTGGTGGAGTGATGGCTTTTCTAACTCTGCATGAGATGCTGCCCTTGGCGTTTGATTATGCGGGGCAGAAGCAAGCAGTCAAGGCCGTGTTTTTGGGAATGGCCTTCATGTCTGCAAGCCTATATTTTCTTGAGATCAGCCTGCCTCAGGAGATGAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

272

Amino Acids

28.73

Weight (kDa)

6.97

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	104 - 256	2.1e-21	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20870 AT3G20870 AT3G20870
fragaria_vesca	FvH4_3g43050 FvH4_3g43050 FvH4_3g43050
malus_domestica	MD03G1024300.v1.1 MD11G1029400.v1.1
prunus_persica	Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1
pyrus_communis	pycom03g02110 pycom11g02290
rosa_chinensis	RchiOBHm_Chr5g0077111
rosa_laevigata	RLG00000036666
rosa_multiflora	Rmu_sc0009061.1_g000002
rosa_roxburghii	Rroxscaffold_1G00005000
rosa_rugosa	Rorug05G0451800
rosa_samantha	Rh5AG506000 Rh5BG527900 Rh5CG552200 Rh5DG540200
rosa_wichuraiana	Rw5G047050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	2 cut(s)	132, 713
AclWI	GGATC	2 cut(s)	427, 655
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	337
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	55, 512
AfiI	CCNNNNNNNGG	3 cut(s)	166, 213, 799
AgsI	TTSAA	5 cut(s)	103, 288, 325, 544, 635
AluBI	AGCT	3 cut(s)	109, 615, 810
AluI	AGCT	3 cut(s)	109, 615, 810
AlwI	GGATC	2 cut(s)	427, 655
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	6 cut(s)	430, 453, 459, 637, 735, 753
ApeKI	GCWGC	2 cut(s)	612, 691
ApoI	RAATTY	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	31, 70
AspS9I	GGNCC	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	461
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	624, 678
BccI	CCATC	1 cut(s)	658
BceAI	ACGGC	1 cut(s)	722
BfaI	CTAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	132, 613, 692
BlpI	GCTNAGC	2 cut(s)	146, 570
BlsI	GCNGC	3 cut(s)	133, 614, 693
BmcAI	AGTACT	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	430
BmsI	GCATC	3 cut(s)	132, 340, 678
Bpu1102I	GCTNAGC	2 cut(s)	146, 570
BpuEI	CTTGAG	2 cut(s)	637, 803
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	456, 696
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 213, 799
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	2 cut(s)	246, 462
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	456, 696
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	166, 213, 799
BseMI	GCAATG	2 cut(s)	246, 462
BseMII	CTCAG	5 cut(s)	23, 64, 536, 561, 812
BseXI	GCAGC	2 cut(s)	624, 678
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	6 cut(s)	432, 455, 461, 639, 737, 755
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	166, 213, 799
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	6 cut(s)	432, 455, 461, 639, 737, 755
BsoBI	CYCGRG	1 cut(s)	110
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	419, 647, 786
Bsp1720I	GCTNAGC	2 cut(s)	146, 570
BspACI	CCGC	2 cut(s)	132, 713
BspANI	GGCC	6 cut(s)	432, 455, 461, 639, 737, 755
BspCNI	CTCAG	5 cut(s)	22, 63, 535, 562, 811
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	427, 655
BsrDI	GCAATG	2 cut(s)	246, 462
BssECI	CCNNGG	2 cut(s)	456, 696
BssMI	GATC	3 cut(s)	419, 647, 786
BssNI	GRCGYC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	456, 696
Bst2BI	CACGAG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstC8I	GCNNGC	5 cut(s)	537, 641, 726, 769, 794
BstDEI	CTNAG	6 cut(s)	9, 50, 146, 522, 570, 798
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	31, 70
BstKTI	GATC	3 cut(s)	422, 650, 789
BstMBI	GATC	3 cut(s)	419, 647, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 248, 688, 734
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	624, 678
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	6 cut(s)	432, 455, 461, 639, 737, 755
BtsCI	GGATG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	5 cut(s)	537, 641, 726, 769, 794
CfoI	GCGC	2 cut(s)	31, 70
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	54, 511
CviAII	CATG	2 cut(s)	683, 760
CviQI	GTAC	2 cut(s)	54, 511
DdeI	CTNAG	6 cut(s)	9, 50, 146, 522, 570, 798
DpnI	GATC	3 cut(s)	421, 649, 788
DpnII	GATC	3 cut(s)	419, 647, 786
DraI	TTTAAA	1 cut(s)	201
DraIII	CACNNNGTG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	456, 696
Eco147I	AGGCCT	1 cut(s)	639
Eco81I	CCTNAGG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	456, 696
ErhI	CCWWGG	2 cut(s)	456, 696
FaeI	CATG	2 cut(s)	686, 763
FaiI	YATR	9 cut(s)	152, 182, 214, 233, 377, 684, 711, 761, 775
FatI	CATG	2 cut(s)	682, 759
FauI	CCCGC	1 cut(s)	706
Fnu4HI	GCNGC	3 cut(s)	132, 613, 692
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	132, 613, 692
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	30, 69
GluI	GCNGC	3 cut(s)	132, 613, 692
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	6 cut(s)	432, 455, 461, 639, 737, 755
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	31, 70
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	686, 763
Hin6I	GCGC	2 cut(s)	29, 68
HinP1I	GCGC	2 cut(s)	29, 68
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	5, 48, 619
HpaII	CCGG	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	47, 383, 448, 511
Hpy188I	TCNGA	3 cut(s)	141, 525, 609
Hpy188III	TCNNGA	5 cut(s)	395, 623, 632, 782, 800
Hpy8I	GTNNAC	4 cut(s)	47, 383, 448, 511
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	6 cut(s)	299, 392, 421, 443, 629, 766
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	518, 682, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 248, 688, 734
HpyF3I	CTNAG	6 cut(s)	9, 50, 146, 522, 570, 798
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	2 cut(s)	686, 763
HspAI	GCGC	2 cut(s)	29, 68
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	419, 647, 786
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	2 cut(s)	624, 678
LweI	GCATC	3 cut(s)	132, 340, 678
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	421, 649, 788
MboI	GATC	3 cut(s)	419, 647, 786
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	8 cut(s)	78, 97, 189, 253, 388, 545, 588, 627
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	42, 628
MnlI	CCTC	4 cut(s)	218, 302, 478, 807
Mox20I	TGGCCA	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	539
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	176, 248, 688, 734
NdeII	GATC	3 cut(s)	419, 647, 786
NlaIII	CATG	2 cut(s)	686, 763
PceI	AGGCCT	1 cut(s)	639
PctI	GAATGC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	133, 614, 693
PleI	GAGTC	2 cut(s)	42, 627
PpsI	GAGTC	2 cut(s)	42, 627
PspFI	CCCAGC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	430
RsaI	GTAC	2 cut(s)	55, 512
RsaNI	GTAC	2 cut(s)	54, 511
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	132, 613, 692
Sau3AI	GATC	3 cut(s)	419, 647, 786
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	2 cut(s)	42, 628
SetI	ASST	8 cut(s)	15, 111, 139, 213, 229, 340, 617, 812
SfaNI	GCATC	3 cut(s)	132, 340, 678
SmlI	CTYRAG	2 cut(s)	616, 782
SmoI	CTYRAG	2 cut(s)	616, 782
Sse9I	AATT	8 cut(s)	78, 97, 189, 253, 388, 545, 588, 627
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	132, 713
SspMI	CTAG	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	639
StyI	CCWWGG	2 cut(s)	456, 696
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	334
TasI	AATT	8 cut(s)	78, 97, 189, 253, 388, 545, 588, 627
TatI	WGTACW	2 cut(s)	53, 510
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	612, 691
TspDTI	ATGAA	4 cut(s)	102, 318, 440, 748
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	627
XspI	CTAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.