Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2232754 .. 2237015

Gene Structure 4262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTGTTGCCAATCAAGAGGCTATCAAGCAGTTTCGGTTGTTAATGGAAGAAGTTGACGAGCCACTGAAGAATACATTTGAGAATGTGCACCAAGGGTATCCAAATGAGACATTAATGCGTTTTCTTAAAGCTCGGGACATGAATGTTGGAAAAGCCCATAAAATGTTGCTTGATTGTTTACAATGGAGGATGGACAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCAACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTGTGGGGTTGTCAGGTTACTCAAAAGAGGGTCATCCTGTCATTGCTGTTGGTGTCGGGCAAAGCACATTTGACAAAGCTTCTGTAAATTACTATGTCCAGTCTCACATCCAAATGAACGAGTACAGAGATCGTGTTGTGTTGCCTTCTGCAACAAAGAAGTATGGACAATATATTGGGACGTGTGTGAAGGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAACCAGATAAAGCTATTGACTGTTATCTCTACAATAGATGACTTAAACTATCCAGAGAAGACGGATACATACTATATTGTCAATGTCCCATACATATTTTCGGCATGTTGGAAGGTGGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAATCCAGGTTCTTCAAGGTTGTGGCAGAGACGAATTACTGAAAATCATGGATTATGCATCCCTCCCACATTTTTGTAGAAAAGAGGGATCCGGGTCATCTCGGCATTCTGACAACGGACGCACTAACAATTGTTTCTCCTTGGACCATCCATTCCATCAAGAGCTCTACAATTTCGTCAAGCAACAAGCCGTCTTGAGGGAGTCCATTGCACCAATCAAGCAGGGATCCTTCCATGTTAATTTCCCGGAAGCTGCCCCAGAAGGCGCCGAGATTGCAAGGAAAATAGAATCTGAGTTCCACAAGTTCGGAAATCAAAATCAAAATGGTCTCACCAAGTCACTAAGTGGCCTAAGAGTTCATGGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

340

Amino Acids

38.47

Weight (kDa)

8.73

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	5.7e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	3e-19	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	914, 1013
AclWI	GGATC	4 cut(s)	732, 745, 870, 883
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	915
AdeI	CACNNNGTG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	248, 395
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	665
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 902
AluI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 902
Alw21I	GWGCWC	2 cut(s)	93, 816
Alw26I	GTCTC	4 cut(s)	104, 378, 672, 983
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	4 cut(s)	732, 745, 870, 883
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	997
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	902
AseI	ATTAAT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	793
AsuC2I	CCSGG	2 cut(s)	742, 896
AsuHPI	GGTGA	1 cut(s)	973
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	793
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	2 cut(s)	737, 875
BanI	GGYRCC	2 cut(s)	914, 1013
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	93, 816
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	3 cut(s)	187, 804, 813
BceAI	ACGGC	1 cut(s)	824
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	2 cut(s)	111, 556
BcnI	CCSGG	2 cut(s)	742, 896
BcoDI	GTCTC	4 cut(s)	104, 378, 672, 983
BfoI	RGCGCY	1 cut(s)	918
BfuI	GTATCC	2 cut(s)	111, 556
BisI	GCNGC	1 cut(s)	903
BlsI	GCNGC	1 cut(s)	904
Bme1390I	CCNGG	3 cut(s)	656, 742, 896
Bme18I	GGWCC	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	4 cut(s)	739, 877, 916, 1015
BmrFI	CCNGG	3 cut(s)	656, 742, 896
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	865
BpuMI	CCSGG	2 cut(s)	742, 896
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	94, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	2 cut(s)	370, 481
Bse3DI	GCAATG	2 cut(s)	312, 855
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	94, 789
BseGI	GGATG	6 cut(s)	198, 231, 304, 378, 707, 796
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	2 cut(s)	312, 855
BseMII	CTCAG	3 cut(s)	281, 504, 933
BseNI	ACTGG	2 cut(s)	370, 481
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	889
BshFI	GGCC	1 cut(s)	999
BshNI	GGYRCC	2 cut(s)	914, 1013
BsiHKAI	GWGCWC	2 cut(s)	93, 816
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	741, 896
BslFI	GGGAC	3 cut(s)	152, 463, 569
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	4 cut(s)	104, 378, 672, 983
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	3 cut(s)	152, 463, 569
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	999
Bso31I	GGTCTC	1 cut(s)	983
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	93, 816
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	400, 737, 875
BspANI	GGCC	1 cut(s)	999
BspCNI	CTCAG	3 cut(s)	280, 503, 934
BspLI	GGNNCC	4 cut(s)	739, 877, 916, 1015
BspPI	GGATC	4 cut(s)	732, 745, 870, 883
BspT107I	GGYRCC	2 cut(s)	914, 1013
BspTNI	GGTCTC	1 cut(s)	983
BsrDI	GCAATG	2 cut(s)	312, 855
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	370, 481
BssECI	CCNNGG	2 cut(s)	94, 789
BssMI	GATC	3 cut(s)	400, 737, 875
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	94, 789
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	915
BstAUI	TGTACA	1 cut(s)	246
BstDEI	CTNAG	5 cut(s)	267, 490, 942, 992, 1001
BstF5I	GGATG	6 cut(s)	198, 231, 304, 378, 707, 796
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	1 cut(s)	917
BstKTI	GATC	3 cut(s)	403, 740, 878
BstMAI	GTCTC	4 cut(s)	104, 378, 672, 983
BstMBI	GATC	3 cut(s)	400, 737, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 923
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	3 cut(s)	654, 740, 894
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	889
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	2 cut(s)	737, 875
BstYI	RGATCY	2 cut(s)	737, 875
BsuI	GTATCC	2 cut(s)	111, 556
BsuRI	GGCC	1 cut(s)	999
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	6 cut(s)	198, 231, 304, 378, 707, 796
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	65, 261
CfoI	GCGC	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	793
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	247, 394
CviAII	CATG	5 cut(s)	142, 603, 697, 884, 1010
CviQI	GTAC	2 cut(s)	247, 394
DdeI	CTNAG	5 cut(s)	267, 490, 942, 992, 1001
DinI	GGCGCC	1 cut(s)	916
DpnI	GATC	3 cut(s)	402, 739, 877
DpnII	GATC	3 cut(s)	400, 737, 875
DraIII	CACNNNGTG	1 cut(s)	995
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	2 cut(s)	94, 789
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	983
Eco47I	GGWCC	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	94, 789
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	816
EgeI	GGCGCC	1 cut(s)	916
EheI	GGCGCC	1 cut(s)	916
ErhI	CCWWGG	2 cut(s)	94, 789
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	5 cut(s)	145, 606, 700, 887, 1013
FaqI	GGGAC	3 cut(s)	152, 463, 569
FatI	CATG	5 cut(s)	141, 602, 696, 883, 1009
Fnu4HI	GCNGC	1 cut(s)	903
FokI	GGATG	6 cut(s)	205, 218, 291, 365, 694, 783
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	1 cut(s)	903
GlaI	GCGC	1 cut(s)	916
GluI	GCNGC	1 cut(s)	903
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	1 cut(s)	999
HapII	CCGG	2 cut(s)	741, 896
HgaI	GACGC	1 cut(s)	777
HhaI	GCGC	1 cut(s)	917
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	5 cut(s)	145, 606, 700, 887, 1013
Hin6I	GCGC	1 cut(s)	915
HinP1I	GCGC	1 cut(s)	915
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	3 cut(s)	263, 851, 938
HpaII	CCGG	2 cut(s)	741, 896
HphI	GGTGA	1 cut(s)	973
Hpy166II	GTNNAC	3 cut(s)	58, 91, 182
Hpy188I	TCNGA	3 cut(s)	760, 943, 959
Hpy188III	TCNNGA	5 cut(s)	17, 137, 551, 809, 844
Hpy8I	GTNNAC	3 cut(s)	58, 91, 182
HpyAV	CCTTC	5 cut(s)	426, 454, 604, 889, 905
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	6 cut(s)	91, 422, 631, 707, 860, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 923
HpyF3I	CTNAG	5 cut(s)	267, 490, 942, 992, 1001
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	5 cut(s)	145, 606, 700, 887, 1013
HspAI	GCGC	1 cut(s)	915
KasI	GGCGCC	1 cut(s)	914
Kzo9I	GATC	3 cut(s)	400, 737, 875
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	1 cut(s)	716
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	287, 987
MalI	GATC	3 cut(s)	402, 739, 877
MboI	GATC	3 cut(s)	400, 737, 875
MboII	GAAGA	5 cut(s)	62, 82, 568, 653, 658
MfeI	CAATTG	1 cut(s)	778
MflI	RGATCY	2 cut(s)	737, 875
MhlI	GDGCHC	2 cut(s)	93, 816
MluCI	AATT	6 cut(s)	204, 358, 683, 778, 820, 889
Mly113I	GGCGCC	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	2 cut(s)	130, 587
MnlI	CCTC	7 cut(s)	13, 183, 292, 633, 722, 727, 840
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	2 cut(s)	741, 896
MspR9I	CCNGG	3 cut(s)	656, 742, 896
MunI	CAATTG	1 cut(s)	778
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	628, 923
NarI	GGCGCC	1 cut(s)	915
NciI	CCSGG	2 cut(s)	742, 896
NdeII	GATC	3 cut(s)	400, 737, 875
NlaIII	CATG	5 cut(s)	145, 606, 700, 887, 1013
NlaIV	GGNNCC	4 cut(s)	739, 877, 916, 1015
NmeAIII	GCCGAG	2 cut(s)	730, 943
NmuCI	GTSAC	1 cut(s)	987
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	606
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	2 cut(s)	263, 938
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	1 cut(s)	904
PleI	GAGTC	1 cut(s)	859
PluTI	GGCGCC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	859
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	4 cut(s)	739, 877, 916, 1015
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	737, 875
RsaI	GTAC	2 cut(s)	248, 395
RsaNI	GTAC	2 cut(s)	247, 394
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
SatI	GCNGC	1 cut(s)	903
Sau3AI	GATC	3 cut(s)	400, 737, 875
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	3 cut(s)	656, 742, 896
SduI	GDGCHC	2 cut(s)	93, 816
SfaNI	GCATC	1 cut(s)	716
SfoI	GGCGCC	1 cut(s)	916
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	6 cut(s)	204, 358, 683, 778, 820, 889
SspDI	GGCGCC	1 cut(s)	914
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	654, 740, 894
StyI	CCWWGG	2 cut(s)	94, 789
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	455
TasI	AATT	6 cut(s)	204, 358, 683, 778, 820, 889
TatI	WGTACW	2 cut(s)	246, 393
TfiI	GAWTC	2 cut(s)	263, 938
Tru1I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
Tru9I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
TscAI	CASTG	2 cut(s)	72, 261
TseFI	GTSAC	1 cut(s)	987
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	987
TspDTI	ATGAA	3 cut(s)	158, 401, 998
TspGWI	ACGGA	2 cut(s)	575, 780
TspRI	CASTG	2 cut(s)	72, 261
VneI	GTGCAC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	793
VspI	ATTAAT	1 cut(s)	116
XceI	RCATGY	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.