Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015248

Physical Location & Seq

Genomic Coordinates Reverse (-)

2311208 .. 2313339

Gene Structure 2132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCGGCGAGTTACGCTACGAGATCGCACAAAATGCCTACATAAAGCTGGTGCTCCACGCTCTCAAGCACAAGACCTCTGCCGTCAACGGCATCCTCCTCGGCCGCGTCTCCCCCCGGAGCGACGTCGTCGTGATCACCGACTCCGTCCCTCTCTTTCACTCCCACATCGGCCTCCTCCCCCAGCTCGAGATCTCCCTCATCCTGATAGAGGAGCACTTTGCTGCTAAAGGAGTGAGCATTGTGGGGTATTTCCACGCTAACGAGAGGTTTGACGATCACGAGCTCGGTGGCATCGCGAAGAATGTCGGCGATCACATTTATCGCTACCTTCCTCAAGCCGCAATTCTTTTGCTAGATAACAGGAAGCTTGAAGCTTTGTCGAAGACTAAGGACCGCAGCCCGGTAGTGCAGATCTACACAAAGGATGCGTCGAGGACTTGGAAGCTAGTTGGATCTGATGGAAACCAGTTGACCATCAAGGAGCCATCAGCAAATGTTGTTCTACTGGATTATATCTCAACTGAAAAATGGCAGGATGTTGTAGATTTTGATGATCACCTTGATGACATTAGCAAGGACTGGCTGAACCCAGAACTATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

203

Amino Acids

22.72

Weight (kDa)

5.82

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0172	PF03665	7 - 200	1.4e-60	Uncharacterised protein family (UPF0172)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55940
fragaria_vesca	FvH4_3g42640
malus_domestica	MD03G1030300.v1.1 MD11G1035300.v1.1
prunus_persica	Prupe.6G026500_v2.0.a1
pyrus_communis	pycom11g02930
rosa_chinensis	RchiOBHm_Chr5g0076271 RchiOBHm_Chr5g0076591
rosa_laevigata	RLG00000036612
rosa_multiflora	Rmu_sc0005961.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005590
rosa_rugosa	Rorug05G0446500
rosa_samantha	Rh5AG501700 Rh5BG523500 Rh5CG547200
rosa_wichuraiana	Rw0G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	2 cut(s)	108, 299
AciI	CCGC	4 cut(s)	6, 106, 342, 397
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	211, 403
AgsI	TTSAA	2 cut(s)	374, 604
AluBI	AGCT	6 cut(s)	49, 187, 286, 370, 377, 448
AluI	AGCT	6 cut(s)	49, 187, 286, 370, 377, 448
Alw21I	GWGCWC	3 cut(s)	57, 219, 288
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	103, 172
ApeKI	GCWGC	2 cut(s)	224, 399
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	2 cut(s)	118, 404
AsuHPI	GGTGA	2 cut(s)	130, 551
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	3 cut(s)	57, 219, 288
BbvI	GCAGC	2 cut(s)	211, 411
BccI	CCATC	3 cut(s)	455, 485, 496
BceAI	ACGGC	2 cut(s)	68, 106
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BclI	TGATCA	2 cut(s)	135, 556
BcnI	CCSGG	2 cut(s)	118, 404
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	356, 449
BglII	AGATCT	2 cut(s)	192, 414
BisI	GCNGC	5 cut(s)	7, 106, 225, 342, 400
BlsI	GCNGC	5 cut(s)	8, 107, 226, 343, 401
Bme1390I	CCNGG	2 cut(s)	118, 404
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	118, 404
BmsI	GCATC	3 cut(s)	102, 303, 418
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	50, 321
BpuMI	CCSGG	2 cut(s)	118, 404
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	100, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 403
Bse1I	ACTGG	3 cut(s)	469, 513, 587
BseDI	CCNNGG	2 cut(s)	100, 116
BseGI	GGATG	4 cut(s)	93, 201, 433, 544
BseLI	CCNNNNNNNGG	2 cut(s)	211, 403
BseNI	ACTGG	3 cut(s)	469, 513, 587
BseRI	GAGGAG	3 cut(s)	89, 167, 227
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	211, 411
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	108, 299
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	105, 174
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	57, 219, 288
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	118, 404
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	211, 403
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	105, 174
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	57, 219, 288
Bsp143I	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
Bsp68I	TCGCGA	1 cut(s)	299
BspACI	CCGC	4 cut(s)	6, 106, 342, 397
BspANI	GGCC	2 cut(s)	105, 174
BspFNI	CGCG	2 cut(s)	108, 299
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	469, 513, 587
BssECI	CCNNGG	2 cut(s)	100, 116
BssMI	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	93, 201, 433, 544
BstFNI	CGCG	2 cut(s)	108, 299
BstKTI	GATC	8 cut(s)	27, 138, 195, 280, 316, 417, 458, 559
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 35
BstSCI	CCNGG	2 cut(s)	116, 402
BstUI	CGCG	2 cut(s)	108, 299
BstV1I	GCAGC	2 cut(s)	211, 411
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	3 cut(s)	192, 414, 455
BstYI	RGATCY	3 cut(s)	192, 414, 455
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	105, 174
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	93, 201, 433, 544
BtuMI	TCGCGA	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	97, 420
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	8 cut(s)	26, 137, 194, 279, 315, 416, 457, 558
DpnII	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	115
FaiI	YATR	2 cut(s)	44, 516
FaqI	GGGAC	1 cut(s)	134
FbaI	TGATCA	2 cut(s)	135, 556
Fnu4HI	GCNGC	5 cut(s)	7, 106, 225, 342, 400
FokI	GGATG	4 cut(s)	80, 188, 440, 551
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	7, 106, 225, 342, 400
FspBI	CTAG	2 cut(s)	356, 449
GluI	GCNGC	5 cut(s)	7, 106, 225, 342, 400
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	105, 174
HapII	CCGG	2 cut(s)	118, 404
HgaI	GACGC	2 cut(s)	97, 420
Hin1I	GRCGYC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	88, 474
HindII	GTYRAC	2 cut(s)	88, 474
HindIII	AAGCTT	2 cut(s)	368, 375
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	118, 404
HphI	GGTGA	2 cut(s)	130, 551
Hpy166II	GTNNAC	2 cut(s)	88, 474
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	5 cut(s)	133, 190, 205, 281, 298
Hpy8I	GTNNAC	2 cut(s)	88, 474
Hpy99I	CGWCG	4 cut(s)	128, 131, 134, 436
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 35
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Ksp22I	TGATCA	2 cut(s)	135, 556
Kzo9I	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
LmnI	GCTCC	4 cut(s)	60, 120, 214, 484
Lsp1109I	GCAGC	2 cut(s)	211, 411
LweI	GCATC	3 cut(s)	102, 303, 418
MaeI	CTAG	2 cut(s)	356, 449
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	8 cut(s)	26, 137, 194, 279, 315, 416, 457, 558
MboI	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
MboII	GAAGA	2 cut(s)	313, 397
MflI	RGATCY	3 cut(s)	192, 414, 455
MhlI	GDGCHC	3 cut(s)	57, 219, 288
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	433
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	2 cut(s)	118, 404
MspR9I	CCNGG	2 cut(s)	118, 404
MvnI	CGCG	2 cut(s)	108, 299
MwoI	GCNNNNNNNGC	2 cut(s)	15, 35
NciI	CCSGG	2 cut(s)	118, 404
NdeII	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	81
NruI	TCGCGA	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	2 cut(s)	128, 146
PkrI	GCNGC	5 cut(s)	8, 107, 226, 343, 401
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	3 cut(s)	192, 414, 455
PsyI	GACNNNGTC	2 cut(s)	128, 146
RruI	TCGCGA	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	5 cut(s)	7, 106, 225, 342, 400
Sau3AI	GATC	8 cut(s)	24, 135, 192, 277, 313, 414, 455, 556
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	118, 404
SduI	GDGCHC	3 cut(s)	57, 219, 288
SfaNI	GCATC	3 cut(s)	102, 303, 418
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	65, 188, 336
SmoI	CTYRAG	3 cut(s)	65, 188, 336
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	6, 106, 342, 397
SspMI	CTAG	2 cut(s)	356, 449
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	116, 402
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	189, 383, 434
TasI	AATT	1 cut(s)	345
TauI	GCSGC	3 cut(s)	9, 108, 344
TseI	GCWGC	2 cut(s)	224, 399
TspGWI	ACGGA	1 cut(s)	136
Tth111I	GACNNNGTC	2 cut(s)	128, 146
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	2 cut(s)	356, 449
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.