pycom11g04340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015586
Physical Location & Seq
Forward (+)
3379851 .. 3380819
969 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
ATGGAGCTTGAAGACATGTACCAAGGCATCCCAGATGAGTCAGTGAACCTAACTTTCCAGGACTTTGCAGAGCTCAAACTACACCAAGTTACATCAGAAAAGAAAAAAAAACCTACTCCATTATTATTGAATCCTACCTCTCAACTCAAATCCACCACACAAGCATCCTCCCCCTCTCCTTTGACCAAACTCCCCAGCCTTGACTTCAACCGTGCCTTGCAAGCATCCAGAGATAACCACCACCGCAACCGCCACCACAACAACGAAAACAATGTCCCTGTCGGTCCATATGACATTGGTAGTAACAATGATTATAATCATCAGCATATTGATCATCATATGAATACTCATCATGGTCATCAACGTGAAGTCAACCATGACATGCAGCATGGCCATGGAGGTCACGGTCAATATATGGGCGGTGGCGACCATCATCATAACCATCAGATGCATCGTGGGATGCATCGTGGTCATGATGGCCATGCAGTTAATAATGGTCATCATATGAGTCTGAATAGTCCTGGTCCCACGTGTAATTCAGGTATGAAGCATGGATTGGAGACTAGCATGGGGGCTTTTGATCATGATGTGAGTGGTGCGAGCGGTGTGAGCATGGCTTCCATGTACCAGAAAGAGAGAGGAGGAATAAGAAGGCCTGGGTTTCCCCACTCTAATATCTGCACCCTTTGCAGTACCTACATCTATATTTTCCGCCACCGTTGCCTGGTATGTGGTAGAGTGTATTGTAGACAATGCGTGATTCTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCGTCGAGTGTTTAGGGAGGAGATTCAGCCAAAGGTATGTTCAAGTTAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.94

Weight (kDa)

8.56

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 603
AccI GTMKAC 1 cut(s) 748
AciI CCGC 5 cut(s) 244, 250, 420, 603, 712
AcoI YGGCCR 2 cut(s) 391, 478
AcvI CACGTG 1 cut(s) 531
AfaI GTAC 3 cut(s) 20, 626, 694
AfiI CCNNNNNNNGG 1 cut(s) 724
AflIII ACRYGT 2 cut(s) 15, 530
AgsI TTSAA 4 cut(s) 11, 130, 208, 839
AjnI CCWGG 4 cut(s) 57, 520, 655, 723
AjuI GAANNNNNNNTTGG 4 cut(s) 539, 571, 819, 851
AluBI AGCT 2 cut(s) 7, 73
AluI AGCT 2 cut(s) 7, 73
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 554
AoxI GGCC 3 cut(s) 391, 478, 653
ApeKI GCWGC 1 cut(s) 385
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspS9I GGNCC 2 cut(s) 284, 524
AvaII GGWCC 2 cut(s) 284, 524
BalI TGGCCA 2 cut(s) 393, 480
BanII GRGCYC 1 cut(s) 75
BbrPI CACGTG 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 397
BccI CCATC 4 cut(s) 438, 450, 470, 763
BciT130I CCWGG 4 cut(s) 59, 522, 657, 725
BclI TGATCA 2 cut(s) 331, 580
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 2 cut(s) 564, 764
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 4 cut(s) 59, 522, 657, 725
Bme18I GGWCC 2 cut(s) 284, 524
BmgT120I GGNCC 2 cut(s) 284, 524
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 4 cut(s) 59, 522, 657, 725
BmsI GCATC 7 cut(s) 36, 173, 233, 438, 450, 460, 472
BpiI GAAGAC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 22, 394, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 4 cut(s) 59, 522, 657, 725
BseDI CCNNGG 3 cut(s) 22, 394, 656
BseGI GGATG 5 cut(s) 27, 164, 224, 465, 774
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 724
BseRI GAGGAG 2 cut(s) 654, 829
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 664
BshFI GGCC 3 cut(s) 393, 480, 655
BsiHKAI GWGCWC 1 cut(s) 75
BslFI GGGAC 2 cut(s) 260, 510
BslI CCNNNNNNNGG 1 cut(s) 724
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 260, 510
BsnI GGCC 3 cut(s) 393, 480, 655
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 331, 580
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 5 cut(s) 244, 250, 420, 603, 712
BspANI GGCC 3 cut(s) 393, 480, 655
BspHI TCATGA 2 cut(s) 472, 583
BspLI GGNNCC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 22, 394, 656
BssMI GATC 2 cut(s) 331, 580
BssT1I CCWWGG 2 cut(s) 22, 394
Bst2UI CCWGG 4 cut(s) 59, 522, 657, 725
Bst4CI ACNGT 3 cut(s) 212, 407, 719
BstAPI GCANNNNNTGC 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 222, 601
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 5 cut(s) 27, 164, 224, 465, 774
BstKTI GATC 2 cut(s) 334, 583
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 331, 580
BstMWI GCNNNNNNNGC 4 cut(s) 221, 609, 687, 720
BstNI CCWGG 4 cut(s) 59, 522, 657, 725
BstNSI RCATGY 2 cut(s) 19, 385
BstSCI CCNGG 4 cut(s) 57, 520, 655, 723
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 3 cut(s) 393, 480, 655
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 5 cut(s) 27, 164, 224, 465, 774
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 222, 601
CciI TCATGA 2 cut(s) 472, 583
Cfr13I GGNCC 2 cut(s) 284, 524
CseI GACGC 1 cut(s) 787
Csp6I GTAC 3 cut(s) 19, 625, 693
CviJI RGCY 9 cut(s) 7, 73, 198, 393, 480, 575, 617, 655, 825
CviKI_1 RGCY 9 cut(s) 7, 73, 198, 393, 480, 575, 617, 655, 825
CviQI GTAC 3 cut(s) 19, 625, 693
DpnI GATC 2 cut(s) 333, 582
DpnII GATC 2 cut(s) 331, 580
EaeI YGGCCR 2 cut(s) 391, 478
EciI GGCGGA 1 cut(s) 701
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 22, 394
Eco147I AGGCCT 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 284, 524
Eco53kI GAGCTC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 4 cut(s) 57, 520, 655, 723
EcoT14I CCWWGG 2 cut(s) 22, 394
EcoT22I ATGCAT 2 cut(s) 453, 465
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 22, 394
FaqI GGGAC 2 cut(s) 260, 510
FauNDI CATATG 3 cut(s) 289, 339, 504
FbaI TGATCA 2 cut(s) 331, 580
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 5 cut(s) 14, 151, 211, 472, 781
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 564, 764
GluI GCNGC 1 cut(s) 386
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 3 cut(s) 393, 480, 655
HgaI GACGC 1 cut(s) 787
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 5 cut(s) 38, 130, 508, 760, 819
Hpy166II GTNNAC 3 cut(s) 46, 373, 749
Hpy188I TCNGA 3 cut(s) 97, 447, 513
Hpy188III TCNNGA 3 cut(s) 228, 473, 584
Hpy8I GTNNAC 3 cut(s) 46, 373, 749
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 2 cut(s) 645, 779
HpyCH4III ACNGT 3 cut(s) 212, 407, 719
HpyCH4IV ACGT 2 cut(s) 364, 530
HpyCH4V TGCA 8 cut(s) 68, 220, 385, 451, 463, 485, 681, 690
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 609, 687, 720
HpySE526I ACGT 2 cut(s) 364, 530
Ksp22I TGATCA 2 cut(s) 331, 580
Kzo9I GATC 2 cut(s) 331, 580
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 7 cut(s) 36, 173, 233, 438, 450, 460, 472
MaeI CTAG 2 cut(s) 564, 764
MaeII ACGT 2 cut(s) 364, 530
MaeIII GTNAC 3 cut(s) 88, 302, 401
MalI GATC 2 cut(s) 333, 582
MbiI CCGCTC 1 cut(s) 603
MboI GATC 2 cut(s) 331, 580
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 2 cut(s) 393, 480
MluCI AATT 1 cut(s) 535
MluNI TGGCCA 2 cut(s) 393, 480
MlyI GAGTC 2 cut(s) 47, 517
MnlI CCTC 7 cut(s) 148, 178, 184, 392, 632, 635, 807
Mox20I TGGCCA 2 cut(s) 393, 480
Mph1103I ATGCAT 2 cut(s) 453, 465
MscI TGGCCA 2 cut(s) 393, 480
MseI TTAA 2 cut(s) 489, 843
MslI CAYNNNNRTG 2 cut(s) 363, 393
Msp20I TGGCCA 2 cut(s) 393, 480
MspR9I CCNGG 4 cut(s) 59, 522, 657, 725
MvaI CCWGG 4 cut(s) 59, 522, 657, 725
MwoI GCNNNNNNNGC 4 cut(s) 221, 609, 687, 720
NcoI CCATGG 1 cut(s) 394
NdeI CATATG 3 cut(s) 289, 339, 504
NdeII GATC 2 cut(s) 331, 580
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 2 cut(s) 453, 465
NspI RCATGY 2 cut(s) 19, 385
PagI TCATGA 2 cut(s) 472, 583
PceI AGGCCT 1 cut(s) 655
PciI ACATGT 1 cut(s) 15
PfeI GAWTC 3 cut(s) 130, 760, 819
PfoI TCCNGGA 1 cut(s) 57
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 2 cut(s) 46, 516
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 2 cut(s) 46, 516
Ppu21I YACGTR 1 cut(s) 531
PscI ACATGT 1 cut(s) 15
PsiI TTATAA 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 4 cut(s) 57, 520, 655, 723
PspCI CACGTG 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 4 cut(s) 57, 520, 655, 723
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 2 cut(s) 284, 524
RsaI GTAC 3 cut(s) 20, 626, 694
RsaNI GTAC 3 cut(s) 19, 625, 693
RseI CAYNNNNRTG 2 cut(s) 363, 393
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 489, 843
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 2 cut(s) 331, 580
Sau96I GGNCC 2 cut(s) 284, 524
SchI GAGTC 2 cut(s) 47, 517
ScrFI CCNGG 4 cut(s) 59, 522, 657, 725
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 7 cut(s) 36, 173, 233, 438, 450, 460, 472
SinI GGWCC 2 cut(s) 284, 524
SmiMI CAYNNNNRTG 2 cut(s) 363, 393
Sse9I AATT 1 cut(s) 535
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 5 cut(s) 244, 250, 420, 603, 712
SspMI CTAG 2 cut(s) 564, 764
SstI GAGCTC 1 cut(s) 75
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 4 cut(s) 57, 520, 655, 723
StyI CCWWGG 2 cut(s) 22, 394
TaaI ACNGT 3 cut(s) 212, 407, 719
TaiI ACGT 2 cut(s) 367, 533
TaqI TCGA 1 cut(s) 801
TaqII GACCGA 1 cut(s) 272
TasI AATT 1 cut(s) 535
TfiI GAWTC 3 cut(s) 130, 760, 819
Tru1I TTAA 2 cut(s) 489, 843
Tru9I TTAA 2 cut(s) 489, 843
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 356, 560
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 2 cut(s) 284, 524
XceI RCATGY 2 cut(s) 19, 385
XmiI GTMKAC 1 cut(s) 748
XspI CTAG 2 cut(s) 564, 764
Zsp2I ATGCAT 2 cut(s) 453, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.