Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016046

Physical Location & Seq

Genomic Coordinates Reverse (-)

4299106 .. 4299480

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGGATGGTGACAGAAGCAGCAGCATGGGCACCTGCCATGGCTCCTACGGCTTCTTCCCCACAAGACCAAGACGGGATTCGCTTCTTGCTCGACAGGCACTACGCCTTGCATGGAGAGGTCATGATGGTGGTTGTGATTCTGCTGTTTGCTGCCTTCATTTTCTGCCTTCTCGTGTTTCCCTGTCTCCGGCGAGCGAAGAATCGTCATCTGCAATCTTCAAACGATGAAGACTCCGACGTCGTCGGGAAGCCGAGTAGTTGTTTTTCATCATGGTTTATGAAGAGGAGCACAGATGGAGATGGTGCAAGCTCAACAGAGTTGCCATTGAGGAGGTATATTAGCAGTGAAGTTACAAGAAACCCTAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.8

Weight (kDa)

6.82

Isoelectric Point (pI)

79.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58570
fragaria_vesca	FvH4_3g39160
malus_domestica	MD11G1066400.v1.1
prunus_persica	Prupe.6G052800_v2.0.a1
pyrus_communis	pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis	RchiOBHm_Chr5g0070601
rosa_laevigata	RLG00000036141
rosa_roxburghii	Rroxscaffold_1G00010640
rosa_rugosa	Rorug05G0407000
rosa_samantha	Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana	Rw5G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AasI	GACNNNNNNGTC	1 cut(s)	239
AatII	GACGTC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	20, 23, 152
AsuHPI	GGTGA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	32, 35, 139
BccI	CCATC	3 cut(s)	121, 290, 296
BceAI	ACGGC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	21, 24, 153
BlsI	GCNGC	3 cut(s)	22, 25, 154
BmiI	GGNNCC	2 cut(s)	33, 45
BpiI	GAAGAC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	301, 346
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	32, 35, 139
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	34, 293
Bsp19I	CCATGG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	33, 45
BspMI	ACCTGC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	195, 310
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 50, 97
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	32, 35, 139
BstV2I	GAAGAC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	195, 310
CciI	TCATGA	1 cut(s)	123
CviAII	CATG	5 cut(s)	27, 40, 113, 124, 273
CviJI	RGCY	4 cut(s)	44, 53, 253, 312
CviKI_1	RGCY	4 cut(s)	44, 53, 253, 312
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	5 cut(s)	30, 43, 116, 127, 276
FaiI	YATR	8 cut(s)	28, 41, 114, 125, 274, 281, 339, 373
FatI	CATG	5 cut(s)	26, 39, 112, 123, 272
Fnu4HI	GCNGC	3 cut(s)	21, 24, 153
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	21, 24, 153
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	3 cut(s)	21, 24, 153
HapII	CCGG	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	30, 43, 116, 127, 276
HinfI	GANTC	4 cut(s)	79, 139, 202, 233
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	124, 247
Hpy99I	CGWCG	3 cut(s)	242, 245, 248
HpyAV	CCTTC	2 cut(s)	166, 179
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	112, 214, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 50, 97
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	30, 43, 116, 127, 276
LmnI	GCTCC	2 cut(s)	49, 288
LpnPI	CCDG	4 cut(s)	48, 82, 196, 203
Lsp1109I	GCAGC	3 cut(s)	32, 35, 139
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	10, 352
MboII	GAAGA	5 cut(s)	48, 210, 211, 242, 295
MhlI	GDGCHC	2 cut(s)	34, 293
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	112, 279, 324, 327
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	29, 50, 97
NcoI	CCATGG	1 cut(s)	39
NlaIII	CATG	5 cut(s)	30, 43, 116, 127, 276
NlaIV	GGNNCC	2 cut(s)	33, 45
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	79, 139, 202
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	22, 25, 154
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	33, 45
PsyI	GACNNNGTC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	3 cut(s)	21, 24, 153
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	34, 293
SetI	ASST	5 cut(s)	37, 123, 243, 314, 338
SmiMI	CAYNNNNRTG	1 cut(s)	128
SspMI	CTAG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	79, 139, 202
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	20, 23, 152
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	148, 243, 258, 296, 360
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	366
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.