Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011762

Physical Location & Seq

Genomic Coordinates Reverse (-)

4530886 .. 4532727

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTCGTGCTCCGTCGCAGTTGCTAACTCGCCGATGTTTTCTCCGCCGTCGTCTCTGTTCTGCAACAAATCCTCCATGATCTCTCCGGCCCCAGAAACCCTAACTTTACCGCCGCCGCCGCCGTCGGCTTTATCACCGTCGGGATTGGCTTCGTGTTCGTCTCCGTCGTCGCCGTTTCGGATTCGGATCCCGAATCCGCCAAGCGGGTTGTCGTGTTCGGGTCCGGGGTCTCCAGTGACGCAGCTGAAGAGGAAGAGGCCGGCGAAGCTTTGTATTCCGGTGGTGTCCTCGGGATTTGGGACTGGTCCGCCGACGCTGTCGACGGCGGGTAGGAGAGAGATGATGGAGGAAGATAGAGAAGGTTACTACTACGTGTGTTGCAAGAGAGGGAGGAGAGAGGCTTTGGAGGATCGCTACTCAGCTAGTCTTAATCTTGAAGGTGATTCCAAACAGGCGATTTTCGGTATATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAGTTTGCAGCAGAGAACTTGTCAAAGAACATTTTAGATGAAGTTGCGAGGAGGGGTGATGATGAAATTGAGGAGGCAATTAAGCATGGTTATCTGAATACGGACTCTGATTTTCTTAAAGAGGATTTTCGTGGCGGATCATGCTCTTTGACGGCTTTGATCAGGAATGGTAACCTGGTTGTGTCCAATGCTGGCGATTGTCGTGCTGTCTTGAGCAGTGGAGGTGCTGCTGAGGTCCTCACATCTGATCATCGGCCATCAAGGGAAGACGAGAAAGCCAGAATTGAGAACTTGGGGTCTCTAGCTGTATCCAGAGGAATCGGAGATAGGCACCTTAAACAATATGTAATTCCAGAGCCAGAGACCAAAGTACTCAGAATCAAACCCGAACACGAGTTCATAATCATGGCCTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATGTTGTTCGTCCTTCATGCTTAGGCACTGACGGGCAAACTTTGGTGGCTTGCAAAAATCTGATAGAACTATCTACATCACGCGGCTCTTGTGACGATATTAGCGTGATGGTAGTCGAATTGAGACCTTACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

363

Amino Acids

38.82

Weight (kDa)

5.71

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	125 - 351	2.6e-51	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34120
fragaria_vesca	FvH4_3g38990 FvH4_3g38990 FvH4_3g38990
malus_domestica	MD03G1065600.v1.1 MD11G1070500.v1.1
prunus_persica	Prupe.6G054500_v2.0.a1
pyrus_communis	pycom03g05260 pycom11g05910
rosa_chinensis	RchiOBHm_Chr5g0070291
rosa_laevigata	RLG00000036123
rosa_multiflora	Rmu_sc0009590.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010860
rosa_rugosa	Rorug05G0404900
rosa_samantha	Rh5AG460100 Rh5BG478700 Rh5CG502900 Rh5DG490700
rosa_wichuraiana	Rw5G042910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1087
AccB1I	GGYRCC	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	1035
AclWI	GGATC	4 cut(s)	181, 194, 417, 643
AcoI	YGGCCR	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	5 cut(s)	244, 268, 422, 494, 803
AluI	AGCT	5 cut(s)	244, 268, 422, 494, 803
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	6 cut(s)	57, 165, 234, 801, 854, 1069
AlwI	GGATC	4 cut(s)	181, 194, 417, 643
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	4 cut(s)	87, 257, 752, 906
ApeKI	GCWGC	4 cut(s)	241, 494, 506, 725
AspS9I	GGNCC	4 cut(s)	88, 221, 305, 733
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	126, 452, 566
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	221, 305, 733
BamHI	GGATCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	4 cut(s)	253, 481, 518, 712
BccI	CCATC	5 cut(s)	337, 467, 763, 908, 1054
BceAI	ACGGC	5 cut(s)	31, 106, 157, 339, 666
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	1 cut(s)	674
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	2 cut(s)	657, 745
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	6 cut(s)	57, 165, 234, 801, 854, 1069
BfaI	CTAG	2 cut(s)	423, 800
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	8 cut(s)	113, 116, 119, 242, 495, 507, 726, 1036
BlsI	GCNGC	8 cut(s)	114, 117, 120, 243, 496, 508, 727, 1037
BmcAI	AGTACT	1 cut(s)	870
Bme1390I	CCNGG	2 cut(s)	225, 674
Bme18I	GGWCC	3 cut(s)	221, 305, 733
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	88, 221, 305, 733
BmiI	GGNNCC	4 cut(s)	90, 188, 222, 830
BmrFI	CCNGG	2 cut(s)	225, 674
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	729, 973
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	4 cut(s)	234, 801, 854, 1069
BsaJI	CCNNGG	2 cut(s)	224, 288
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	233, 307
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	224, 288
BseGI	GGATG	1 cut(s)	958
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	5 cut(s)	432, 489, 720, 886, 924
BseNI	ACTGG	2 cut(s)	233, 307
BseRI	GAGGAG	3 cut(s)	406, 562, 584
BseXI	GCAGC	4 cut(s)	253, 481, 518, 712
Bsh1236I	CGCG	1 cut(s)	1035
BshFI	GGCC	4 cut(s)	89, 259, 754, 908
BshNI	GGYRCC	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	4 cut(s)	86, 224, 260, 278
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	6 cut(s)	57, 165, 234, 801, 854, 1069
BsmBI	CGTCTC	2 cut(s)	57, 165
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	4 cut(s)	89, 259, 754, 908
Bso31I	GGTCTC	4 cut(s)	234, 801, 854, 1069
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
BspANI	GGCC	4 cut(s)	89, 259, 754, 908
BspCNI	CTCAG	5 cut(s)	431, 490, 721, 885, 923
BspFNI	CGCG	1 cut(s)	1035
BspLI	GGNNCC	4 cut(s)	90, 188, 222, 830
BspPI	GGATC	4 cut(s)	181, 194, 417, 643
BspT107I	GGYRCC	1 cut(s)	828
BspTNI	GGTCTC	4 cut(s)	234, 801, 854, 1069
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	233, 307
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	224, 288
BssMI	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
BssSI	CACGAG	1 cut(s)	890
Bst2BI	CACGAG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	242, 248
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	261, 691, 1003
BstDEI	CTNAG	6 cut(s)	418, 498, 729, 872, 910, 973
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	958
BstFNI	CGCG	1 cut(s)	1035
BstKTI	GATC	6 cut(s)	81, 189, 412, 638, 660, 748
BstMAI	GTCTC	6 cut(s)	57, 165, 234, 801, 854, 1069
BstMBI	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 265, 494, 503, 639
BstNI	CCWGG	1 cut(s)	674
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	223, 672
BstUI	CGCG	1 cut(s)	1035
BstV1I	GCAGC	4 cut(s)	253, 481, 518, 712
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	4 cut(s)	89, 259, 754, 908
BtsCI	GGATG	1 cut(s)	958
BtsI	GCAGTG	2 cut(s)	721, 954
BtsIMutI	CAGTG	4 cut(s)	240, 721, 954, 978
Cac8I	GCNNGC	3 cut(s)	261, 691, 1003
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	88, 221, 305, 733
CseI	GACGC	2 cut(s)	247, 322
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	6 cut(s)	76, 479, 584, 639, 904, 969
CviQI	GTAC	1 cut(s)	869
DdeI	CTNAG	6 cut(s)	418, 498, 729, 872, 910, 973
DpnI	GATC	6 cut(s)	80, 188, 411, 637, 659, 747
DpnII	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	2 cut(s)	242, 248
EarI	CTCTTC	2 cut(s)	242, 248
EciI	GGCGGA	4 cut(s)	33, 186, 297, 648
Eco31I	GGTCTC	4 cut(s)	234, 801, 854, 1069
Eco47I	GGWCC	3 cut(s)	221, 305, 733
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	733
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	672
Esp3I	CGTCTC	2 cut(s)	57, 165
FaeI	CATG	6 cut(s)	79, 482, 587, 642, 907, 972
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	75, 478, 583, 638, 903, 968
FauI	CCCGC	2 cut(s)	197, 319
FbaI	TGATCA	2 cut(s)	657, 745
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	8 cut(s)	113, 116, 119, 242, 495, 507, 726, 1036
FokI	GGATG	1 cut(s)	965
Fsp4HI	GCNGC	8 cut(s)	113, 116, 119, 242, 495, 507, 726, 1036
FspBI	CTAG	2 cut(s)	423, 800
GluI	GCNGC	8 cut(s)	113, 116, 119, 242, 495, 507, 726, 1036
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	89, 259, 754, 908
HapII	CCGG	4 cut(s)	86, 224, 260, 278
HgaI	GACGC	2 cut(s)	247, 322
Hin1II	CATG	6 cut(s)	79, 482, 587, 642, 907, 972
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	6 cut(s)	181, 193, 443, 602, 816, 876
HpaII	CCGG	4 cut(s)	86, 224, 260, 278
HphI	GGTGA	3 cut(s)	126, 452, 566
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	9 cut(s)	180, 186, 594, 607, 745, 821, 875, 913, 1014
Hpy188III	TCNNGA	8 cut(s)	141, 190, 291, 434, 661, 709, 810, 851
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	8 cut(s)	17, 52, 127, 142, 169, 172, 316, 325
HpyAV	CCTTC	3 cut(s)	353, 431, 975
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	63, 381, 488, 506, 1005
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 265, 494, 503, 639
HpyF3I	CTNAG	6 cut(s)	418, 498, 729, 872, 910, 973
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	6 cut(s)	79, 482, 587, 642, 907, 972
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	657, 745
Kzo9I	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	4 cut(s)	253, 481, 518, 712
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	2 cut(s)	423, 800
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	4 cut(s)	235, 362, 668, 1043
MalI	GATC	6 cut(s)	80, 188, 411, 637, 659, 747
MboI	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
MboII	GAAGA	4 cut(s)	259, 265, 362, 776
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	564, 576, 780, 846, 1070
MlyI	GAGTC	1 cut(s)	596
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	4 cut(s)	429, 579, 615, 834
MslI	CAYNNNNRTG	2 cut(s)	483, 902
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	4 cut(s)	86, 224, 260, 278
MspR9I	CCNGG	2 cut(s)	225, 674
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	5 cut(s)	118, 265, 494, 503, 639
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	79, 482, 587, 642, 907, 972
NlaIV	GGNNCC	4 cut(s)	90, 188, 222, 830
NmuCI	GTSAC	2 cut(s)	235, 1043
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 1053
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	5 cut(s)	181, 193, 443, 816, 876
PflFI	GACNNNGTC	1 cut(s)	316
PkrI	GCNGC	8 cut(s)	114, 117, 120, 243, 496, 508, 727, 1037
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	733
PsiI	TTATAA	1 cut(s)	1087
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	672
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	4 cut(s)	90, 188, 222, 830
PspPI	GGNCC	4 cut(s)	88, 221, 305, 733
PspPPI	RGGWCCY	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
RseI	CAYNNNNRTG	2 cut(s)	483, 902
SalI	GTCGAC	1 cut(s)	319
SaqAI	TTAA	4 cut(s)	429, 579, 615, 834
SatI	GCNGC	8 cut(s)	113, 116, 119, 242, 495, 507, 726, 1036
Sau3AI	GATC	6 cut(s)	78, 186, 409, 635, 657, 745
Sau96I	GGNCC	4 cut(s)	88, 221, 305, 733
ScaI	AGTACT	1 cut(s)	870
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	225, 674
SduI	GDGCHC	1 cut(s)	11
SexAI	ACCWGGT	1 cut(s)	672
SinI	GGWCC	3 cut(s)	221, 305, 733
SmiMI	CAYNNNNRTG	2 cut(s)	483, 902
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	5 cut(s)	564, 576, 780, 846, 1070
SspMI	CTAG	2 cut(s)	423, 800
StyD4I	CCNGG	2 cut(s)	223, 672
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	320, 1068
TasI	AATT	5 cut(s)	564, 576, 780, 846, 1070
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	4 cut(s)	115, 118, 121, 1038
TfiI	GAWTC	5 cut(s)	181, 193, 443, 816, 876
Tru1I	TTAA	4 cut(s)	429, 579, 615, 834
Tru9I	TTAA	4 cut(s)	429, 579, 615, 834
TscAI	CASTG	4 cut(s)	240, 721, 954, 985
TseFI	GTSAC	2 cut(s)	235, 1043
TseI	GCWGC	4 cut(s)	241, 494, 506, 725
Tsp45I	GTSAC	2 cut(s)	235, 1043
TspDTI	ATGAA	4 cut(s)	552, 576, 886, 957
TspGWI	ACGGA	2 cut(s)	153, 614
TspRI	CASTG	4 cut(s)	240, 721, 954, 985
Tth111I	GACNNNGTC	1 cut(s)	316
VpaK11BI	GGWCC	3 cut(s)	221, 305, 733
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	2 cut(s)	423, 800
ZrmI	AGTACT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.