pycom11g06070

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013090
Physical Location & Seq
Forward (+)
4697289 .. 4700708
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGTTTGGTACTGTCCCTCAGTTCTCGCTAGCCCTAGAAAACAGACGACTGAACCCTCTCTTCTTCTTCTGCGGTCTTCATTTCATCTCGGAATCGCCGATTGCTCCAGAAATGAAAATTGTTCGGTTTGCTTTGCGATCCTTCAATGACGGTGTATCACGCCGATTTCATCAGCCACATGTGAGAACTCTGTCTACAAACATGACATCAGGTGGAGGAATGGATGATAAGAAAAATTCTAATTCCTTTGAATCTTCTGATGATTTCGAGCGGCGGATCTTCAGTGATACTTCTGGGGGTAATTTTTTCTCAAAGCTAGATAGGCTCGGGAAGGCTCATGATGGACATGTTTCAGATCTTGGTGGAGGATTTGGAATTGGAAGTGGAAGTGGTTCCCATGTACTTGATGGCTTAGATGAGAGTTTTAACACATTATCTGATGGAATGGATGGAAAATTAGAGAAAGCAGCCACCTACTTTGAGTATGATGAGGAAGAAGTAGACAAAGATGATTATTCTTTCAGACCAGATATGACTTTTAAGCCAGGAATGACTTATGAGAAAAAAGATCTGGATCTTACTAAGCCAGGAATAAGTAAACTTCCCCGTAGGTATGAGTTTGAAGTAACTACAAAGGACGTTCTTAGAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCGAATTTCTTAACAGAGGCTGGAATTCTTATCAAAAGAAGCAAGACTGGAATTAGCGCCAAAGCTCAGAGGAAGGTCGCCAGGGAAATCAAAACAGCTCGAGCTTTTGGTTTAATGCCTTTCACGACAATGGGGACAAAATCATTCGTTTTTGGGAAAACTATGGAGAATCTGGATGAAGATTATGAGTACGAAAGTTATGATAACCATATGGGTGATGCCGATGAAGGAGACCCTCTGGCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

309

Amino Acids

34.61

Weight (kDa)

5.61

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 217 - 265 4.7e-15 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 919
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 2 cut(s) 194, 501
AciI CCGC 3 cut(s) 72, 271, 274
AclWI GGATC 3 cut(s) 132, 284, 582
AcsI RAATTY 3 cut(s) 235, 682, 702
AcuI CTGAAG 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 920
AfaI GTAC 3 cut(s) 10, 402, 869
AflIII ACRYGT 2 cut(s) 178, 346
AgsI TTSAA 3 cut(s) 145, 251, 623
AjnI CCWGG 3 cut(s) 544, 586, 758
AluBI AGCT 5 cut(s) 316, 653, 743, 776, 782
AluI AGCT 5 cut(s) 316, 653, 743, 776, 782
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 3 cut(s) 132, 284, 582
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 2 cut(s) 326, 777
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 3 cut(s) 235, 682, 702
Asp700I GAANNNNTTC 1 cut(s) 391
AspLEI GCGC 2 cut(s) 737, 922
AsuHPI GGTGA 1 cut(s) 905
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 2 cut(s) 326, 777
BanI GGYRCC 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 479
BccI CCATC 4 cut(s) 335, 401, 434, 443
BciT130I CCWGG 3 cut(s) 546, 588, 760
BcoDI GTCTC 1 cut(s) 903
BfaI CTAG 3 cut(s) 29, 35, 317
BfoI RGCGCY 2 cut(s) 738, 923
BglII AGATCT 2 cut(s) 355, 568
BisI GCNGC 2 cut(s) 272, 468
BlsI GCNGC 2 cut(s) 273, 469
Bme1390I CCNGG 3 cut(s) 546, 588, 760
BmeT110I CYCGRG 2 cut(s) 326, 777
BmiI GGNNCC 2 cut(s) 394, 921
BmrFI CCNGG 3 cut(s) 546, 588, 760
BmsI GCATC 1 cut(s) 886
BmtI GCTAGC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 1 cut(s) 759
Bse1I ACTGG 1 cut(s) 730
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 3 cut(s) 546, 588, 760
BseDI CCNNGG 1 cut(s) 759
BseGI GGATG 3 cut(s) 229, 454, 859
BseJI GATNNNNATC 1 cut(s) 573
BseMII CTCAG 2 cut(s) 32, 758
BseNI ACTGG 1 cut(s) 730
BseXI GCAGC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 919
BsiHKCI CYCGRG 2 cut(s) 326, 777
BslFI GGGAC 1 cut(s) 826
BsmAI GTCTC 1 cut(s) 903
BsmFI GGGAC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 903
BsoBI CYCGRG 2 cut(s) 326, 777
Bsp143I GATC 5 cut(s) 137, 276, 355, 568, 574
BspACI CCGC 3 cut(s) 72, 271, 274
BspCNI CTCAG 2 cut(s) 31, 757
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 394, 921
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 3 cut(s) 132, 284, 582
BspT107I GGYRCC 1 cut(s) 919
BspTNI GGTCTC 1 cut(s) 903
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 759
BssMI GATC 5 cut(s) 137, 276, 355, 568, 574
BssNI GRCGYC 1 cut(s) 920
Bst2UI CCWGG 3 cut(s) 546, 588, 760
Bst4CI ACNGT 2 cut(s) 13, 152
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 18, 412, 582, 644, 744
BstF5I GGATG 3 cut(s) 229, 454, 859
BstH2I RGCGCY 2 cut(s) 738, 923
BstHHI GCGC 2 cut(s) 737, 922
BstKTI GATC 5 cut(s) 140, 279, 358, 571, 577
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 5 cut(s) 137, 276, 355, 568, 574
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 3 cut(s) 546, 588, 760
BstNSI RCATGY 2 cut(s) 182, 350
BstSCI CCNGG 3 cut(s) 544, 586, 758
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 4 cut(s) 276, 355, 568, 574
BstYI RGATCY 4 cut(s) 276, 355, 568, 574
BtsCI GGATG 3 cut(s) 229, 454, 859
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 737, 922
Csp6I GTAC 3 cut(s) 9, 401, 868
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 5 cut(s) 179, 202, 338, 347, 398
CviQI GTAC 3 cut(s) 9, 401, 868
DdeI CTNAG 5 cut(s) 18, 412, 582, 644, 744
DinI GGCGCC 1 cut(s) 921
DpnI GATC 5 cut(s) 139, 278, 357, 570, 576
DpnII GATC 5 cut(s) 137, 276, 355, 568, 574
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 326, 777
EcoRI GAATTC 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 544, 586, 758
EgeI GGCGCC 1 cut(s) 921
EheI GGCGCC 1 cut(s) 921
FaeI CATG 5 cut(s) 182, 205, 341, 350, 401
FaqI GGGAC 1 cut(s) 826
FatI CATG 5 cut(s) 178, 201, 337, 346, 397
FauNDI CATATG 1 cut(s) 888
FblI GTMKAC 2 cut(s) 194, 501
Fnu4HI GCNGC 2 cut(s) 272, 468
FokI GGATG 3 cut(s) 236, 461, 866
Fsp4HI GCNGC 2 cut(s) 272, 468
FspBI CTAG 3 cut(s) 29, 35, 317
GlaI GCGC 2 cut(s) 736, 921
GluI GCNGC 2 cut(s) 272, 468
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 738, 923
HhaI GCGC 2 cut(s) 737, 922
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 5 cut(s) 182, 205, 341, 350, 401
Hin6I GCGC 2 cut(s) 735, 920
HinP1I GCGC 2 cut(s) 735, 920
HinfI GANTC 4 cut(s) 92, 251, 672, 847
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 3 cut(s) 195, 502, 599
Hpy188I TCNGA 6 cut(s) 91, 259, 355, 439, 524, 747
Hpy188III TCNNGA 7 cut(s) 107, 328, 338, 572, 661, 802, 851
Hpy8I GTNNAC 3 cut(s) 195, 502, 599
HpyAV CCTTC 4 cut(s) 151, 325, 745, 899
HpyCH4III ACNGT 2 cut(s) 13, 152
HpyCH4IV ACGT 1 cut(s) 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 5 cut(s) 18, 412, 582, 644, 744
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 5 cut(s) 182, 205, 341, 350, 401
HspAI GCGC 2 cut(s) 735, 920
KasI GGCGCC 1 cut(s) 919
Kzo9I GATC 5 cut(s) 137, 276, 355, 568, 574
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 886
MaeI CTAG 3 cut(s) 29, 35, 317
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 625
MalI GATC 5 cut(s) 139, 278, 357, 570, 576
MbiI CCGCTC 1 cut(s) 271
MboI GATC 5 cut(s) 137, 276, 355, 568, 574
MboII GAAGA 8 cut(s) 52, 55, 58, 68, 246, 271, 506, 869
MflI RGATCY 4 cut(s) 276, 355, 568, 574
MluCI AATT 9 cut(s) 117, 235, 241, 301, 375, 455, 682, 702, 729
Mly113I GGCGCC 1 cut(s) 920
MnlI CCTC 8 cut(s) 27, 66, 209, 359, 484, 688, 741, 924
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 5 cut(s) 426, 540, 689, 791, 925
MslI CAYNNNNRTG 2 cut(s) 806, 891
MspR9I CCNGG 3 cut(s) 546, 588, 760
MvaI CCWGG 3 cut(s) 546, 588, 760
MwoI GCNNNNNNNGC 1 cut(s) 322
NarI GGCGCC 1 cut(s) 920
NdeI CATATG 1 cut(s) 888
NdeII GATC 5 cut(s) 137, 276, 355, 568, 574
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 5 cut(s) 182, 205, 341, 350, 401
NlaIV GGNNCC 2 cut(s) 394, 921
NspI RCATGY 2 cut(s) 182, 350
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 1 cut(s) 337
PciI ACATGT 2 cut(s) 178, 346
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 4 cut(s) 92, 251, 672, 847
PkrI GCNGC 2 cut(s) 273, 469
PluTI GGCGCC 1 cut(s) 923
PscI ACATGT 2 cut(s) 178, 346
Psp6I CCWGG 3 cut(s) 544, 586, 758
PspGI CCWGG 3 cut(s) 544, 586, 758
PspN4I GGNNCC 2 cut(s) 394, 921
PspXI VCTCGAGB 1 cut(s) 777
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 4 cut(s) 276, 355, 568, 574
RsaI GTAC 3 cut(s) 10, 402, 869
RsaNI GTAC 3 cut(s) 9, 401, 868
RseI CAYNNNNRTG 2 cut(s) 806, 891
SaqAI TTAA 5 cut(s) 426, 540, 689, 791, 925
SatI GCNGC 2 cut(s) 272, 468
Sau3AI GATC 5 cut(s) 137, 276, 355, 568, 574
ScrFI CCNGG 3 cut(s) 546, 588, 760
SfaNI GCATC 1 cut(s) 886
SfoI GGCGCC 1 cut(s) 921
Sfr274I CTCGAG 1 cut(s) 777
SlaI CTCGAG 1 cut(s) 777
SmiMI CAYNNNNRTG 2 cut(s) 806, 891
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
Sse9I AATT 9 cut(s) 117, 235, 241, 301, 375, 455, 682, 702, 729
SsiI CCGC 3 cut(s) 72, 271, 274
SspDI GGCGCC 1 cut(s) 919
SspMI CTAG 3 cut(s) 29, 35, 317
StyD4I CCNGG 3 cut(s) 544, 586, 758
TaaI ACNGT 2 cut(s) 13, 152
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 267, 778
TasI AATT 9 cut(s) 117, 235, 241, 301, 375, 455, 682, 702, 729
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 4 cut(s) 92, 251, 672, 847
Tru1I TTAA 5 cut(s) 426, 540, 689, 791, 925
Tru9I TTAA 5 cut(s) 426, 540, 689, 791, 925
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 6 cut(s) 68, 73, 128, 158, 870, 918
TspRI CASTG 1 cut(s) 289
XapI RAATTY 3 cut(s) 235, 682, 702
XceI RCATGY 2 cut(s) 182, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 777
XmiI GTMKAC 2 cut(s) 194, 501
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 3 cut(s) 29, 35, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.