pycom11g09050

Domain of unknown function (DUF4378)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
7203270 .. 7204790
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1329 bp
ATGATCGATGTTGACATTTTGGAGTTATTCAAAGTAAACAAGGAATTTTTCTTTAAAATTCTACAAGATCCAGAAGTTAGTACAAACCAGTTTCCAGGCCTGAAAAATTCCAAGAACAAAGTCAGATTAACAAAATCAAGGTCATTCCCCTTCACTGATTCCTCTCGAGCGAGTAATAGGAGGCCTAGCACACTCAAACACAAGCAGAATGAAGTTTGGTCCTTCCCAAAAGGAGAAAAATTGCTTGCTACTACTCAGACACCGAAGTCAATGACATCCGAAAGTCAGGAAGACTATTCTATGAAGTCCAAGCATTACATGGCGGGTAATAACAGCGTAGGCAGTACCATGCAACAAGAAACAAGCTTTTCTTCTTTGGGATTGCCTGAGGAATTTAGTCACCAAGGATGGAATCAATTGGTCATAAATCGTTTCAGACATATAACGCAGAAGCTAATGCATGCGCTCCAAGAGAGCAAGAAGGAAAATTCTGGCAATTCCACCGAGTCTCTTTTCTGGAAAGACCCTTCTGGACGTGATGGCAAAGAAGTGCTTGAAACGCTGGAGTTAACTACGACACAAGAGGGAATCAAGGTTCATGGTTTAGATGATAATCTTGGGCGGCAAAGACGTCAGCGTGTAAGAAGAACCTCCTCTCTAGATGAGTCGCTTAGTAGATATACTCAGTTGTATGAGAGCAGCTACAGCAGTGATCAGAGAAATTTGCATCACTCGAAGAGCTTAAAGTTGAAAAGTGAAGAAAAAGTTCCTTCAACTGGGAATGCTCAGAAAACCACCAGAAGGAATCTGTCACTGCCTGATCTTGACTCTTTTTCTTCCATCTTAAACGGGGCATTGGTTAAAGATGCTTTTCGTTTAGGGATACCGGTTACAAAAGCTGCGGAACAAAATACCGATAAGTCTGAACAACTCGATGCTATTTTAGAAAGTGACGACAGTGCAAATATTGCTGACATAAAGGACAGTGATGAGCATGAAGTCGTGCCATTAGTAGGAGAAAGCACAACTCACCAGGAGCAAGAGATGGTTATTGCGATGAGTCGTGAAAGCAAGCAAGCACAGCCGATGGAAAGTTCTAATCTTGATCCCCCAGACTATATAACCAGCAATGCAAGGTTGTCAATCTCAGAAGGTTCAGAGTTCAATCCCGGAAGTCCCGTTGCGAATGAGCCGAATTCTTCTCTTAACCTACAAGGCAGGCACATCATAGATTCTTTACCGGAATCCTCCATAAGCACTGAAATTGAACATAAGAGTTCAGTCACTCACTCCTCGCGCTTTGTAGTGGACAAAGTGGATCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

49.7

Weight (kDa)

6.05

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
AatII GACGTC 1 cut(s) 634
AccII CGCG 1 cut(s) 1297
AciI CCGC 3 cut(s) 323, 622, 902
AclWI GGATC 4 cut(s) 62, 1100, 1317, 1326
AcsI RAATTY 7 cut(s) 44, 57, 106, 392, 487, 721, 1195
AcyI GRCGYC 1 cut(s) 631
AfaI GTAC 2 cut(s) 82, 346
AfiI CCNNNNNNNGG 3 cut(s) 776, 801, 1013
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 6 cut(s) 31, 557, 751, 774, 1165, 1268
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 2 cut(s) 94, 1032
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
AluBI AGCT 5 cut(s) 366, 454, 702, 741, 899
AluI AGCT 5 cut(s) 366, 454, 702, 741, 899
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 4 cut(s) 62, 1100, 1317, 1326
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 2 cut(s) 97, 182
ApeKI GCWGC 2 cut(s) 699, 899
ApoI RAATTY 7 cut(s) 44, 57, 106, 392, 487, 721, 1195
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsiGI ACCGGT 1 cut(s) 886
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 2 cut(s) 466, 1299
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 1170
AsuHPI GGTGA 2 cut(s) 392, 1022
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 219
AxyI CCTNAGG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 711, 886
BccI CCATC 5 cut(s) 402, 533, 848, 1039, 1081
BciT130I CCWGG 2 cut(s) 96, 1034
BciVI GTATCC 1 cut(s) 876
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 1170
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 186, 659
BfmI CTRYAG 1 cut(s) 703
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 3 cut(s) 623, 700, 900
BlsI GCNGC 3 cut(s) 624, 701, 901
Bme1390I CCNGG 3 cut(s) 96, 1034, 1170
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 219
BmrFI CCNGG 3 cut(s) 96, 1034, 1170
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 3 cut(s) 736, 856, 925
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 1170
Bsa29I ATCGAT 2 cut(s) 6, 1321
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 2 cut(s) 886, 1240
Bsc4I CCNNNNNNNGG 3 cut(s) 776, 801, 1013
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 2 cut(s) 88, 781
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 1135
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 2 cut(s) 96, 1034
BseCI ATCGAT 2 cut(s) 6, 1321
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 2 cut(s) 275, 413
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 3 cut(s) 776, 801, 1013
BseMI GCAATG 1 cut(s) 1135
BseMII CTCAG 5 cut(s) 269, 378, 698, 800, 1161
BseNI ACTGG 2 cut(s) 88, 781
BseRI GAGGAG 2 cut(s) 643, 1282
BseXI GCAGC 2 cut(s) 711, 886
Bsh1236I CGCG 1 cut(s) 1297
BshFI GGCC 2 cut(s) 99, 184
BshTI ACCGGT 1 cut(s) 886
BshVI ATCGAT 2 cut(s) 6, 1321
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 3 cut(s) 887, 1170, 1241
BslFI GGGAC 1 cut(s) 1161
BslI CCNNNNNNNGG 3 cut(s) 776, 801, 1013
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 1161
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 2 cut(s) 99, 184
BsoBI CYCGRG 1 cut(s) 165
Bsp143I GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
BspACI CCGC 3 cut(s) 323, 622, 902
BspANI GGCC 2 cut(s) 99, 184
BspCNI CTCAG 5 cut(s) 268, 379, 697, 799, 1160
BspDI ATCGAT 2 cut(s) 6, 1321
BspFNI CGCG 1 cut(s) 1297
BspPI GGATC 4 cut(s) 62, 1100, 1317, 1326
BspQI GCTCTTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 1135
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 2 cut(s) 88, 781
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
BssNI GRCGYC 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 96, 1034
Bst4CI ACNGT 2 cut(s) 959, 986
Bst6I CTCTTC 1 cut(s) 731
BstACI GRCGYC 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 968
BstC8I GCNNGC 5 cut(s) 246, 462, 1073, 1077, 1220
BstDEI CTNAG 6 cut(s) 255, 387, 671, 684, 786, 1147
BstF5I GGATG 2 cut(s) 275, 413
BstFNI CGCG 1 cut(s) 1297
BstHHI GCGC 2 cut(s) 466, 1299
BstKTI GATC 7 cut(s) 6, 70, 715, 823, 1108, 1321, 1325
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
BstMWI GCNNNNNNNGC 4 cut(s) 559, 705, 968, 1081
BstNI CCWGG 2 cut(s) 96, 1034
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 3 cut(s) 94, 1032, 1168
BstSFI CTRYAG 1 cut(s) 703
BstUI CGCG 1 cut(s) 1297
BstV1I GCAGC 2 cut(s) 711, 886
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 2 cut(s) 6, 1321
Bsu36I CCTNAGG 1 cut(s) 387
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 2 cut(s) 99, 184
BsuTUI ATCGAT 2 cut(s) 6, 1321
BtgZI GCGATG 1 cut(s) 1070
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 2 cut(s) 275, 413
BtsI GCAGTG 2 cut(s) 715, 812
BtsIMutI CAGTG 6 cut(s) 153, 715, 812, 964, 991, 1257
Cac8I GCNNGC 5 cut(s) 246, 462, 1073, 1077, 1220
CfoI GCGC 2 cut(s) 466, 1299
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 219
ClaI ATCGAT 2 cut(s) 6, 1321
Csp6I GTAC 2 cut(s) 81, 345
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 5 cut(s) 319, 349, 461, 599, 995
CviJI RGCY 9 cut(s) 99, 184, 366, 454, 702, 741, 899, 1084, 1192
CviKI_1 RGCY 9 cut(s) 99, 184, 366, 454, 702, 741, 899, 1084, 1192
CviQI GTAC 2 cut(s) 81, 345
DdeI CTNAG 6 cut(s) 255, 387, 671, 684, 786, 1147
DpnI GATC 7 cut(s) 5, 69, 714, 822, 1107, 1320, 1324
DpnII GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
DraI TTTAAA 1 cut(s) 55
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 731
EarI CTCTTC 1 cut(s) 731
Eco130I CCWWGG 1 cut(s) 403
Eco147I AGGCCT 2 cut(s) 99, 184
Eco47I GGWCC 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 94, 1032
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 5 cut(s) 322, 352, 464, 602, 998
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 537, 569
FaqI GGGAC 1 cut(s) 1161
FatI CATG 5 cut(s) 318, 348, 460, 598, 994
FauI CCCGC 1 cut(s) 316
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 623, 700, 900
FokI GGATG 2 cut(s) 262, 420
Fsp4HI GCNGC 3 cut(s) 623, 700, 900
FspBI CTAG 2 cut(s) 186, 659
GlaI GCGC 2 cut(s) 465, 1298
GluI GCNGC 3 cut(s) 623, 700, 900
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 99, 184
HapII CCGG 3 cut(s) 887, 1170, 1241
HhaI GCGC 2 cut(s) 466, 1299
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 5 cut(s) 322, 352, 464, 602, 998
Hin6I GCGC 2 cut(s) 464, 1297
HinP1I GCGC 2 cut(s) 464, 1297
HincII GTYRAC 2 cut(s) 13, 570
HindII GTYRAC 2 cut(s) 13, 570
HindIII AAGCTT 1 cut(s) 364
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 3 cut(s) 887, 1170, 1241
HphI GGTGA 2 cut(s) 392, 1022
Hpy166II GTNNAC 4 cut(s) 13, 37, 570, 1309
Hpy188I TCNGA 9 cut(s) 125, 258, 280, 437, 717, 789, 925, 1150, 1159
Hpy8I GTNNAC 4 cut(s) 13, 37, 570, 1309
HpyAV CCTTC 7 cut(s) 160, 232, 475, 537, 780, 795, 1145
HpyCH4III ACNGT 2 cut(s) 959, 986
HpyCH4IV ACGT 2 cut(s) 535, 631
HpyCH4V TGCA 5 cut(s) 352, 460, 727, 962, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 559, 705, 968, 1081
HpyF3I CTNAG 6 cut(s) 255, 387, 671, 684, 786, 1147
HpySE526I ACGT 2 cut(s) 535, 631
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 5 cut(s) 322, 352, 464, 602, 998
HspAI GCGC 2 cut(s) 464, 1297
Ksp22I TGATCA 1 cut(s) 712
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 2 cut(s) 471, 1036
Lsp1109I GCAGC 2 cut(s) 711, 886
LweI GCATC 3 cut(s) 736, 856, 925
MaeI CTAG 2 cut(s) 186, 659
MaeII ACGT 2 cut(s) 535, 631
MaeIII GTNAC 5 cut(s) 398, 810, 889, 950, 1282
MalI GATC 7 cut(s) 5, 69, 714, 822, 1107, 1320, 1324
MboI GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
MboII GAAGA 7 cut(s) 302, 363, 657, 748, 770, 828, 1191
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 1 cut(s) 67
MlyI GAGTC 4 cut(s) 515, 674, 821, 1069
MnlI CCTC 8 cut(s) 172, 174, 382, 577, 661, 664, 1258, 1303
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 7 cut(s) 54, 128, 569, 743, 845, 861, 1206
MspI CCGG 3 cut(s) 887, 1170, 1241
MspR9I CCNGG 3 cut(s) 96, 1034, 1170
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 2 cut(s) 96, 1034
MvnI CGCG 1 cut(s) 1297
MwoI GCNNNNNNNGC 4 cut(s) 559, 705, 968, 1081
NciI CCSGG 1 cut(s) 1170
NdeII GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
NlaIII CATG 5 cut(s) 322, 352, 464, 602, 998
NmuCI GTSAC 4 cut(s) 398, 810, 950, 1282
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 1 cut(s) 464
PaeI GCATGC 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 165
PceI AGGCCT 2 cut(s) 99, 184
PciSI GCTCTTC 1 cut(s) 731
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 6 cut(s) 158, 412, 588, 805, 1232, 1244
PfoI TCCNGGA 1 cut(s) 1168
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 3 cut(s) 624, 701, 901
PleI GAGTC 4 cut(s) 514, 673, 821, 1068
PpsI GAGTC 4 cut(s) 514, 673, 821, 1068
Psp6I CCWGG 2 cut(s) 94, 1032
PspGI CCWGG 2 cut(s) 94, 1032
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 82, 346
RsaNI GTAC 2 cut(s) 81, 345
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 7 cut(s) 54, 128, 569, 743, 845, 861, 1206
SatI GCNGC 3 cut(s) 623, 700, 900
Sau3AI GATC 7 cut(s) 3, 67, 712, 820, 1105, 1318, 1322
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 4 cut(s) 515, 674, 821, 1069
ScrFI CCNGG 3 cut(s) 96, 1034, 1170
SfaNI GCATC 3 cut(s) 736, 856, 925
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SphI GCATGC 1 cut(s) 464
SseBI AGGCCT 2 cut(s) 99, 184
SsiI CCGC 3 cut(s) 323, 622, 902
SspI AATATT 1 cut(s) 967
SspMI CTAG 2 cut(s) 186, 659
StuI AGGCCT 2 cut(s) 99, 184
StyD4I CCNGG 3 cut(s) 94, 1032, 1168
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 959, 986
TaiI ACGT 2 cut(s) 538, 634
TaqI TCGA 5 cut(s) 6, 166, 734, 933, 1321
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 6 cut(s) 158, 412, 588, 805, 1232, 1244
Tru1I TTAA 7 cut(s) 54, 128, 569, 743, 845, 861, 1206
Tru9I TTAA 7 cut(s) 54, 128, 569, 743, 845, 861, 1206
TscAI CASTG 6 cut(s) 160, 715, 819, 964, 991, 1264
TseFI GTSAC 4 cut(s) 398, 810, 950, 1282
TseI GCWGC 2 cut(s) 699, 899
Tsp45I GTSAC 4 cut(s) 398, 810, 950, 1282
TspDTI ATGAA 4 cut(s) 225, 317, 587, 1011
TspRI CASTG 6 cut(s) 160, 715, 819, 964, 991, 1264
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 7 cut(s) 44, 57, 106, 392, 487, 721, 1195
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 2 cut(s) 186, 659
ZraI GACGTC 1 cut(s) 632
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.