Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Forward (+)

7537074 .. 7539794

Gene Structure 2721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGAAGCTCGCTCGTCCCCATCGTCCCCTCGCAAACCCTCTCATCCACTCCAAACCCAGAAACCTCTGTTCCTCCTCCTCCTCCAATCCCACCTCCCAAGATAATGACGAAAACGATGACGCCCGCTTTGTCTTCACCCTATCCGAGGTCGTTCGGGGGAAGCAGAGCTGGAAGCTCGCCTTCAACGACCCCTCCATTTCAGCTTCCCTGAAGCCCCGCCACGTTGAGAAGGTTCTGATCCAGAACGTACGGAATCCCAGGTTAGCTTTGCGCTTTTTCAATTTCTTGGGCTTGCACAGAAGCTTCGGTCACTCTACGGCGTCGTTTTGCATTCTGATTCACGCCCTGGTTCAGGGCAATCTCTTTTGGCCCGCCTCATCGCTTTTGCAGACCCTCTTGCTTCGTGGGTTGAGCCCAAGTGAGGTTTTTCAATCTCTGTTGAATTCTTATAGGAAACTTGAATGTTCGTCGAGTGTGGGATTTGATTTGTTGGTTCAAGGTTATGTGCAAAATAAGAGGGTTTTGGATGGTGTTTTGGTTGTGAGGCTGATGAGGGAGTGTGAAATGTTGCCGGAGGTGAGAACTTTGAATGCCCTTTTAAATGGGTTGGTGAAAATTAGGCATTTCAATTTGGTTCTGCAACTCTTTGATGAAATGATCAATGTGGGTCTTCGACCCGATGTTTATATGTATACTGCCGCGGTTAGGAGCTTGTGTGAATTGAAGGATTTAGATAAGGCTAAGGAAGTGATTCGGTACGCTGAATCGAATACGTGTGAGTTGAGTGTTGTTATGTATAATGTGTTGATTCATGGGCTCTGCAAGTGCCAGAGGGTTTGGGAGGCTGTAGAGGTTAAGAATATGTTGGGTCAGAAAGGGTTGAAAGCGGACATGGTCACATATTGTACTTTGGTGCTTGGGTTGTGTAAAGTGCAGGAATTTGAGGTTGGTGTGGAGTTAATGAATGAAATGATTGAGCTGGGGTTTGTTCCGAGTGAAGCAGTTCTTTCGGGTCTCATGGAGGGGTTGAGGAGGAAGGGGAAGATTGAAGATGCTTTTGATTTAGTGAAGAGAATGGGAGAAGTTGGGGTGGTTCCTAATTTGTTTGCGTACAATTCATTGCTCAATTCTTTGTGTAAAGGTGGGAAACTGGATGAGGCAGAATTGCTCTTCGATAACATGGGAAAGAAGGGTATGGTCCCTAATGATGTAACCTTTTCTATATTGATTGATTCCTTCTGCCGAAGGGGGATGTTGGATGTTGCATTTCGTTATTTTGATAAAATGATTAATGCTGGAGTTAGAGTAACTGTTTACCCCTACAATTCTTTGATAAGCGGGCAATGCAAGTTTGGAACATTGAGTGCAGCGGAATCTATCTTCTGCGAGATGATGAATAAAGGAGTGGCTCCAACCGTTGTAACCTATACGTCATTGATAAGTGGGTACTGCAAAGAAGGAGAGATGCACAAGGCATTTAGGCTGTATCATGAAATGATGGAAAAAGGCATTACGCCAAACACTTACACCTTTAGTGTAATTATTTCAGGTCTTTGTCGTGCAAATATGATGGCTGAAGCAACAAAATTATTTGATGAAATGGTGGAAGGGGGCATTTTGCCAAATGAGGTGACTTATAATCTTATGATTGATGGGCACTGCCGACAAGGTAACACAGTTAGAGCCTTTGAGTTGCTTGATGAAATGGTTGAGAAGGGTCTTGTACCAGACACGTATACATATAGACCTCTAATAAGTGGTCTGTGTTCGACGGGCAGAGTGTCTGAAGCCAAAAAGTTTGTAGATTTCCTTCACAAAGAGAATTACAAGTTAAATGAGATGTGCTATAGTGCACTGCTACATGGTTATTGCAAGGAAGGAAGATTACATGATGCATTAGGTGCTTGTCGTGAGATGATTGAAAGAGGGGTAGACATGGATCTTGTGTGCTATGCTGTACTAATTTGTGGAGCTTTAAAGCAACAGGATACCGGAAGATTATTTGGTCTCTTTAATGAGATGCATAATCAAGGATTGAGGCCTGATAATGTAATATATACAAGTATGATCGATGAATATGGGAAAGCAGGGAGATTTGACAAGGCAATTGGAGTTTGGGATATAATGGTTGGTGAAGGATGCTTACCTAATGTTGTGACTTACACTGCCTTGGTATATGGATTATGCAAGGCAGGTTATATGGATAAAGCAGAGCGTCTTTTGAAGGATATGCTCGTCAGTGATGCCTTTCCCAATCACGTCACATATGGTTGTTTCTTAAATCACCTTAGCAAAGAAGGAACCATGGAGAAAGCTTTACAACTGCACAATGCCATGCTTGCGGGGTTGTCAGCAAACACCATCACATACAATATACTTATCAGGGGTTTCTGCAAAATGGGTAAGTTTCAGGAAGCTTCACAGCTCCTGATCGAAATGACAGTCAATGGTATTTACCCAGATTGTATCACGTATTCAACATTTATCTATGAGTACTGTAGGAGGGGCAATTTGCTAGAAGCTATTAAGCTGTGGGATGTTATGCTAGATAGGGGTCTGAAGCCTGATATTCTAGCATATAACTTTTTGATATATGGGTGTTGTGTCACTGGAGAAATAACCAAGGCTTTCGAGTTGCGTGATGACATGATGAGAAGAGGGTTGAAGCCAAATCGAGTTACATATAACACACTTATCCGTGGAACTTGCCTGACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

907

Amino Acids

101.97

Weight (kDa)

7.62

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 239	2e-08	PPR repeat family
PPR_3	PF13812	215 - 271	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	259 - 285	3e-07	PPR repeat
PPR_2	PF13041	262 - 310	8.6e-11	PPR repeat family
PPR_long	PF17177	315 - 411	3.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	339 - 380	2.5e-08	PPR repeat family
PPR_3	PF13812	356 - 413	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 394	3.9e-10	PPR repeat
PPR_2	PF13041	366 - 415	1.8e-16	PPR repeat family
PPR	PF01535	370 - 398	5.1e-07	PPR repeat
PPR_1	PF12854	397 - 429	6.3e-12	PPR repeat
PPR	PF01535	404 - 434	1.3e-06	PPR repeat
PPR_long	PF17177	405 - 527	8e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	408 - 450	6.5e-08	PPR repeat family
PPR_3	PF13812	426 - 481	3.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	439 - 485	4.8e-14	PPR repeat family
PPR_3	PF13812	459 - 516	5.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	467 - 499	7.3e-14	PPR repeat
PPR_2	PF13041	471 - 520	5.5e-22	PPR repeat family
PPR	PF01535	474 - 504	5.8e-11	PPR repeat
PPR_1	PF12854	502 - 535	1.7e-12	PPR repeat
PPR	PF01535	509 - 539	1.1e-06	PPR repeat
PPR_2	PF13041	514 - 555	2.7e-14	PPR repeat family
PPR_long	PF17177	523 - 628	7e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	527 - 637	6.3e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	529 - 586	8.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	538 - 570	1.6e-12	PPR repeat
PPR_2	PF13041	541 - 589	8.5e-18	PPR repeat family
PPR	PF01535	544 - 574	4.7e-09	PPR repeat
PPR_1	PF12854	572 - 602	1.2e-08	PPR repeat
PPR_2	PF13041	584 - 625	4.9e-06	PPR repeat family
PPR_1	PF12854	608 - 639	2.1e-07	PPR repeat
PPR_2	PF13041	612 - 657	1.2e-08	PPR repeat family
PPR	PF01535	615 - 644	2.8e-06	PPR repeat
PPR_3	PF13812	670 - 725	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	678 - 710	6e-07	PPR repeat
PPR_2	PF13041	681 - 730	1.1e-14	PPR repeat family
PPR	PF01535	684 - 714	1.3e-06	PPR repeat
PPR_1	PF12854	713 - 744	5.8e-13	PPR repeat
PPR_2	PF13041	716 - 761	9.4e-11	PPR repeat family
PPR	PF01535	719 - 745	1.5e-06	PPR repeat
PPR_2	PF13041	751 - 799	6.7e-12	PPR repeat family
PPR_1	PF12854	782 - 814	4.6e-11	PPR repeat
PPR_2	PF13041	786 - 834	5.9e-15	PPR repeat family
PPR	PF01535	788 - 818	5.5e-08	PPR repeat
PPR_1	PF12854	816 - 848	2e-09	PPR repeat
PPR_2	PF13041	827 - 868	9.4e-10	PPR repeat family
PPR_3	PF13812	845 - 899	2.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	851 - 883	2.8e-06	PPR repeat
PPR_2	PF13041	855 - 903	1.2e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1638
Acc36I	ACCTGC	1 cut(s)	2183
AccI	GTMKAC	3 cut(s)	692, 1736, 1932
AccII	CGCG	1 cut(s)	701
AciI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
AclWI	GGATC	2 cut(s)	232, 1947
AcsI	RAATTY	2 cut(s)	442, 938
AcuI	CTGAAG	4 cut(s)	230, 1596, 1806, 2579
AcyI	GRCGYC	2 cut(s)	120, 320
AfaI	GTAC	8 cut(s)	249, 758, 907, 1112, 1448, 1725, 1959, 2495
AfiI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
AflIII	ACRYGT	2 cut(s)	773, 1731
AjiI	CACGTC	1 cut(s)	2260
AjnI	CCWGG	2 cut(s)	257, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	930, 962
Alw21I	GWGCWC	1 cut(s)	1855
Alw26I	GTCTC	2 cut(s)	1019, 2012
Alw44I	GTGCAC	1 cut(s)	1851
AlwI	GGATC	2 cut(s)	232, 1947
AlwNI	CAGNNNCTG	1 cut(s)	2428
AoxI	GGCC	2 cut(s)	368, 2039
ApaLI	GTGCAC	1 cut(s)	1851
ApeKI	GCWGC	1 cut(s)	1367
ApoI	RAATTY	2 cut(s)	442, 938
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 2427, 2459
AseI	ATTAAT	1 cut(s)	1290
Asp700I	GAANNNNTTC	2 cut(s)	750, 1002
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	369, 1198
AsuHPI	GGTGA	6 cut(s)	127, 589, 622, 1642, 2144, 2276
AvaII	GGWCC	1 cut(s)	1198
BaeGI	GKGCMC	2 cut(s)	1659, 1855
BanII	GRGCYC	2 cut(s)	416, 819
BarI	GAAGNNNNNNTAC	6 cut(s)	1794, 1826, 1869, 1901, 2127, 2159
BbsI	GAAGAC	2 cut(s)	124, 662
Bbv12I	GWGCWC	1 cut(s)	1855
BbvI	GCAGC	1 cut(s)	1379
BccI	CCATC	6 cut(s)	27, 521, 1492, 1564, 1646, 2369
BceAI	ACGGC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	990, 1024
BciT130I	CCWGG	2 cut(s)	259, 347
BciVI	GTATCC	1 cut(s)	1981
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	1019, 2012
BfaI	CTAG	3 cut(s)	2516, 2546, 2573
BfmI	CTRYAG	3 cut(s)	846, 1846, 2497
BfuAI	ACCTGC	1 cut(s)	2183
BfuI	GTATCC	1 cut(s)	1981
BisI	GCNGC	2 cut(s)	699, 1368
BlsI	GCNGC	2 cut(s)	700, 1369
BmcAI	AGTACT	1 cut(s)	2495
Bme1390I	CCNGG	2 cut(s)	259, 347
Bme18I	GGWCC	1 cut(s)	1198
BmgBI	CACGTC	1 cut(s)	2260
BmgT120I	GGNCC	2 cut(s)	369, 1198
BmiI	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
BmrFI	CCNGG	2 cut(s)	259, 347
BmsI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
BpiI	GAAGAC	2 cut(s)	124, 662
BpmI	CTGGAG	2 cut(s)	1317, 2631
Bpu10I	CCTNAGC	2 cut(s)	741, 2288
Bsa29I	ATCGAT	1 cut(s)	2070
BsaAI	YACGTR	3 cut(s)	774, 1734, 2472
BsaHI	GRCGYC	2 cut(s)	120, 320
BsaI	GGTCTC	2 cut(s)	1019, 2012
BsaJI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BsaWI	WCCGGW	1 cut(s)	1991
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 206, 700, 730, 1290, 1320
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
Bse1I	ACTGG	2 cut(s)	1155, 2614
Bse3DI	GCAATG	2 cut(s)	1118, 1349
BseBI	CCWGG	2 cut(s)	259, 347
BseCI	ATCGAT	1 cut(s)	2070
BseDI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BseGI	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BseLI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
BseMI	GCAATG	2 cut(s)	1118, 1349
BseNI	ACTGG	2 cut(s)	1155, 2614
BseRI	GAGGAG	4 cut(s)	64, 67, 70, 1045
BseSI	GKGCMC	2 cut(s)	1659, 1855
BseXI	GCAGC	1 cut(s)	1379
BseYI	CCCAGC	1 cut(s)	979
BsgI	GTGCAG	3 cut(s)	953, 1386, 2309
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	370, 2041
BshVI	ATCGAT	1 cut(s)	2070
BsiHKAI	GWGCWC	1 cut(s)	1855
BsiSI	CCGG	2 cut(s)	572, 1992
BsiWI	CGTACG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	9, 1184
BslI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
BsmAI	GTCTC	2 cut(s)	1019, 2012
BsmFI	GGGAC	2 cut(s)	9, 1184
BsmI	GAATGC	2 cut(s)	330, 595
BsnI	GGCC	2 cut(s)	370, 2041
Bso31I	GGTCTC	2 cut(s)	1019, 2012
Bsp1286I	GDGCHC	4 cut(s)	416, 819, 1659, 1855
Bsp143I	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
Bsp19I	CCATGG	1 cut(s)	2304
BspACI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
BspANI	GGCC	2 cut(s)	370, 2041
BspDI	ATCGAT	1 cut(s)	2070
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	1489
BspLI	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
BspMI	ACCTGC	1 cut(s)	2183
BspPI	GGATC	2 cut(s)	232, 1947
BspQI	GCTCTTC	1 cut(s)	1175
BspTNI	GGTCTC	2 cut(s)	1019, 2012
BsrDI	GCAATG	2 cut(s)	1118, 1349
BsrI	ACTGG	2 cut(s)	1155, 2614
BssECI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BssMI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
BssNAI	GTATAC	2 cut(s)	693, 1737
BssNI	GRCGYC	2 cut(s)	120, 320
BssT1I	CCWWGG	3 cut(s)	2169, 2304, 2622
Bst1107I	GTATAC	2 cut(s)	693, 1737
Bst2UI	CCWGG	2 cut(s)	259, 347
Bst4CI	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
Bst6I	CTCTTC	3 cut(s)	1064, 1175, 2650
BstACI	GRCGYC	2 cut(s)	120, 320
BstAPI	GCANNNNNTGC	1 cut(s)	1901
BstBAI	YACGTR	3 cut(s)	774, 1734, 2472
BstC8I	GCNNGC	7 cut(s)	9, 124, 177, 293, 372, 1340, 2340
BstDEI	CTNAG	2 cut(s)	741, 2288
BstDSI	CCRYGG	3 cut(s)	699, 2304, 2698
BstENI	CCTNNNNNAGG	2 cut(s)	143, 350
BstF5I	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	240, 660, 1942, 2070, 2433
BstMAI	GTCTC	2 cut(s)	1019, 2012
BstMBI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
BstMWI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
BstNI	CCWGG	2 cut(s)	259, 347
BstSCI	CCNGG	2 cut(s)	257, 345
BstSFI	CTRYAG	3 cut(s)	846, 1846, 2497
BstSLI	GKGCMC	2 cut(s)	1659, 1855
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	1379
BstV2I	GAAGAC	2 cut(s)	124, 662
BstX2I	RGATCY	1 cut(s)	1939
BstYI	RGATCY	1 cut(s)	1939
BstZ17I	GTATAC	2 cut(s)	693, 1737
Bsu15I	ATCGAT	1 cut(s)	2070
BsuI	GTATCC	1 cut(s)	1981
BsuRI	GGCC	2 cut(s)	370, 2041
BsuTUI	ATCGAT	1 cut(s)	2070
BtgI	CCRYGG	3 cut(s)	699, 2304, 2698
BtgZI	GCGATG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	2260
BtsCI	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BtsI	GCAGTG	3 cut(s)	1657, 1853, 2163
BtsIMutI	CAGTG	5 cut(s)	1657, 1853, 2163, 2245, 2607
BveI	ACCTGC	1 cut(s)	2183
Cac8I	GCNNGC	7 cut(s)	9, 124, 177, 293, 372, 1340, 2340
CaiI	CAGNNNCTG	1 cut(s)	2428
CciI	TCATGA	1 cut(s)	1489
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	369, 1198
Cfr42I	CCGCGG	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	2070
CseI	GACGC	3 cut(s)	128, 309, 2204
Csp6I	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
CviQI	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
DdeI	CTNAG	2 cut(s)	741, 2288
DpnI	GATC	5 cut(s)	239, 659, 1941, 2069, 2432
DpnII	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
DraI	TTTAAA	2 cut(s)	600, 1977
Eam1104I	CTCTTC	3 cut(s)	1064, 1175, 2650
EarI	CTCTTC	3 cut(s)	1064, 1175, 2650
Eco130I	CCWWGG	3 cut(s)	2169, 2304, 2622
Eco147I	AGGCCT	1 cut(s)	2041
Eco24I	GRGCYC	2 cut(s)	416, 819
Eco31I	GGTCTC	2 cut(s)	1019, 2012
Eco47I	GGWCC	1 cut(s)	1198
Eco57I	CTGAAG	4 cut(s)	230, 1596, 1806, 2579
EcoNI	CCTNNNNNAGG	2 cut(s)	143, 350
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	257, 345
EcoT14I	CCWWGG	3 cut(s)	2169, 2304, 2622
EcoT22I	ATGCAT	2 cut(s)	1897, 2025
EcoT38I	GRGCYC	2 cut(s)	416, 819
ErhI	CCWWGG	3 cut(s)	2169, 2304, 2622
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 990, 1022
FaqI	GGGAC	2 cut(s)	9, 1184
FauI	CCCGC	5 cut(s)	131, 224, 379, 1331, 2335
FauNDI	CATATG	1 cut(s)	2266
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	3 cut(s)	692, 1736, 1932
Fnu4HI	GCNGC	2 cut(s)	699, 1368
FokI	GGATG	7 cut(s)	29, 539, 1166, 1264, 1271, 2151, 2549
FriOI	GRGCYC	2 cut(s)	416, 819
Fsp4HI	GCNGC	2 cut(s)	699, 1368
FspBI	CTAG	3 cut(s)	2516, 2546, 2573
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	699, 1368
GsaI	CCCAGC	1 cut(s)	983
GsuI	CTGGAG	2 cut(s)	1317, 2631
HaeIII	GGCC	2 cut(s)	370, 2041
HapII	CCGG	2 cut(s)	572, 1992
HgaI	GACGC	3 cut(s)	128, 309, 2204
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	120, 320
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	3 cut(s)	301, 2313, 2415
HinfI	GANTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
HpaII	CCGG	2 cut(s)	572, 1992
HphI	GGTGA	6 cut(s)	127, 589, 622, 1642, 2144, 2276
Hpy166II	GTNNAC	5 cut(s)	693, 1315, 1737, 1853, 1933
Hpy188I	TCNGA	7 cut(s)	145, 237, 336, 873, 993, 1786, 2559
Hpy188III	TCNNGA	5 cut(s)	241, 1490, 1910, 2411, 2428
Hpy8I	GTNNAC	5 cut(s)	693, 1315, 1737, 1853, 1933
Hpy99I	CGWCG	3 cut(s)	325, 472, 1774
HpyCH4III	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
HpyCH4IV	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
HpyF3I	CTNAG	2 cut(s)	741, 2288
HpySE526I	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
Hsp92I	GRCGYC	2 cut(s)	120, 320
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	657
KspI	CCGCGG	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
LguI	GCTCTTC	1 cut(s)	1175
LmnI	GCTCC	4 cut(s)	708, 1414, 1970, 2430
Lsp1109I	GCAGC	1 cut(s)	1379
LweI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
MaeI	CTAG	3 cut(s)	2516, 2546, 2573
MaeII	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
MalI	GATC	5 cut(s)	239, 659, 1941, 2069, 2432
MboI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
MfeI	CAATTG	1 cut(s)	2106
MflI	RGATCY	1 cut(s)	1939
MhlI	GDGCHC	4 cut(s)	416, 819, 1659, 1855
MmeI	TCCRAC	2 cut(s)	1236, 1436
Mph1103I	ATGCAT	2 cut(s)	1897, 2025
MroXI	GAANNNNTTC	2 cut(s)	750, 1002
MseI	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
MspA1I	CMGCKG	2 cut(s)	701, 1370
MspI	CCGG	2 cut(s)	572, 1992
MspR9I	CCNGG	2 cut(s)	259, 347
MunI	CAATTG	1 cut(s)	2106
Mva1269I	GAATGC	2 cut(s)	330, 595
MvaI	CCWGG	2 cut(s)	259, 347
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
NcoI	CCATGG	1 cut(s)	2304
NdeI	CATATG	1 cut(s)	2266
NdeII	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
NlaIV	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
NmuCI	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
NsiI	ATGCAT	2 cut(s)	1897, 2025
PagI	TCATGA	1 cut(s)	1489
PceI	AGGCCT	1 cut(s)	2041
PciSI	GCTCTTC	1 cut(s)	1175
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 183
PctI	GAATGC	2 cut(s)	330, 595
PdmI	GAANNNNTTC	2 cut(s)	750, 1002
PfeI	GAWTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
Pfl23II	CGTACG	1 cut(s)	247
PflFI	GACNNNGTC	1 cut(s)	893
PkrI	GCNGC	2 cut(s)	700, 1369
Ppu21I	YACGTR	3 cut(s)	774, 1734, 2472
PshBI	ATTAAT	1 cut(s)	1290
PsiI	TTATAA	1 cut(s)	1638
Psp6I	CCWGG	2 cut(s)	257, 345
PspFI	CCCAGC	1 cut(s)	979
PspGI	CCWGG	2 cut(s)	257, 345
PspLI	CGTACG	1 cut(s)	247
PspN4I	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
PspPI	GGNCC	2 cut(s)	369, 1198
PstNI	CAGNNNCTG	1 cut(s)	2428
PsuI	RGATCY	1 cut(s)	1939
PsyI	GACNNNGTC	1 cut(s)	893
RsaI	GTAC	8 cut(s)	249, 758, 907, 1112, 1448, 1725, 1959, 2495
RsaNI	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
SacII	CCGCGG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	1175
SaqAI	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
SatI	GCNGC	2 cut(s)	699, 1368
Sau3AI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
Sau96I	GGNCC	2 cut(s)	369, 1198
ScaI	AGTACT	1 cut(s)	2495
ScrFI	CCNGG	2 cut(s)	259, 347
SduI	GDGCHC	4 cut(s)	416, 819, 1659, 1855
SfaNI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
SfcI	CTRYAG	3 cut(s)	846, 1846, 2497
Sfr303I	CCGCGG	1 cut(s)	702
SgrBI	CCGCGG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	1198
SseBI	AGGCCT	1 cut(s)	2041
SsiI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
SspMI	CTAG	3 cut(s)	2516, 2546, 2573
StuI	AGGCCT	1 cut(s)	2041
StyD4I	CCNGG	2 cut(s)	257, 345
StyI	CCWWGG	3 cut(s)	2169, 2304, 2622
TaaI	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
TaiI	ACGT	7 cut(s)	225, 249, 776, 1433, 1736, 2262, 2474
TaqI	TCGA	9 cut(s)	470, 673, 767, 1173, 1769, 2070, 2433, 2631, 2674
TaqII	GACCGA	1 cut(s)	296
TatI	WGTACW	3 cut(s)	905, 1957, 2493
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
Tru1I	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
Tru9I	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
TscAI	CASTG	5 cut(s)	1664, 1860, 2170, 2245, 2614
TseFI	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
TseI	GCWGC	1 cut(s)	1367
Tsp45I	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
TspGWI	ACGGA	2 cut(s)	265, 2687
TspRI	CASTG	5 cut(s)	1664, 1860, 2170, 2245, 2614
Tth111I	GACNNNGTC	1 cut(s)	893
VneI	GTGCAC	1 cut(s)	1851
VpaK11BI	GGWCC	1 cut(s)	1198
VspI	ATTAAT	1 cut(s)	1290
XagI	CCTNNNNNAGG	2 cut(s)	143, 350
XapI	RAATTY	2 cut(s)	442, 938
XmiI	GTMKAC	3 cut(s)	692, 1736, 1932
XmnI	GAANNNNTTC	2 cut(s)	750, 1002
XspI	CTAG	3 cut(s)	2516, 2546, 2573
ZrmI	AGTACT	1 cut(s)	2495
Zsp2I	ATGCAT	2 cut(s)	1897, 2025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.