pycom11g12260

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015299
Physical Location & Seq
Forward (+)
11171393 .. 11171992
600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGCCTACTTCTGCATCACGACCCTCGCATGCACCAAAAGCAAAGTCAAATCTAATTAGAATCATTGCAATAGTCTTGCTAGCTTCAATTGTCATTTTGGGTCTTGTGGTGCTCATCACCTGGCTCATTGTGAGGCCGAAACGCCTTGTTTACACCATCGAAGATGGTTCGATCCAAAACTTCAACCTAACCAATAACCACCTCTCAGCGGATTTTGATTTTGTCATCAATCGATCCTATAATCCCAACAAAAGAGTCTCCATATACTATGACTCTATTGGTGCTACAGTGAATTACAATGACCAGACTCTGGCATTTTCCGGGGTTGAACCCTTCTATCAGCGCCGTCGAAATGTGACCCGCTTTGAGGTCAAGTTCACGGCTCCCTCCACTGCACTTTCCAGCTCTGTCTCTAAGGATCTAATGCTTGAGAAAAGATCAGGCAAGATTCAGTTTGATGTTTGGCTCAAGGCAAGGATTAGGTTTAAGGTCGGAGCCTTGAAGTCACACCACCGCACTCTAAGGGTTTCGTGTTCCCCAGTGTTGGAGTTATCAAGGCCTAAGAATTTGAAAAGGACGTACTGTTATGCTGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

22.65

Weight (kDa)

10.28

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 78 - 178 5.6e-14 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22870
fragaria_vesca FvH4_3g30480
malus_domestica MD03G1127800.v1.1 MD11G1149600.v1.1
prunus_persica Prupe.6G114100_v2.0.a1
pyrus_communis pycom11g12260
rosa_chinensis RchiOBHm_Chr5g0056431
rosa_laevigata RLG00000035098
rosa_multiflora Rmu_sc0000317.1_g000045
rosa_roxburghii Rroxscaffold_1G00023880
rosa_rugosa Rorug05G0300000
rosa_samantha Rh5AG370500 Rh5BG381800 Rh5CG404600 Rh5DG394600
rosa_wichuraiana Rw5G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 3 cut(s) 209, 361, 514
AclWI GGATC 3 cut(s) 166, 228, 426
AcsI RAATTY 1 cut(s) 565
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 4 cut(s) 208, 310, 367, 544
AgsI TTSAA 5 cut(s) 87, 184, 329, 502, 571
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 83, 405
AluI AGCT 2 cut(s) 83, 405
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 262, 415
AlwI GGATC 3 cut(s) 166, 228, 426
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 2 cut(s) 134, 557
ApoI RAATTY 1 cut(s) 565
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspLEI GCGC 1 cut(s) 345
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 2 cut(s) 158, 164
BceAI ACGGC 2 cut(s) 330, 396
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 262, 415
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 121, 322
BmiI GGNNCC 2 cut(s) 384, 496
BmrFI CCNGG 2 cut(s) 121, 322
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 23
BmtI GCTAGC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 449, 452
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 310, 367, 544
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 321
BseLI CCNNNNNNNGG 4 cut(s) 208, 310, 367, 544
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 2 cut(s) 136, 559
BshVI ATCGAT 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 4 cut(s) 208, 310, 367, 544
BsmAI GTCTC 2 cut(s) 262, 415
BsnI GGCC 2 cut(s) 136, 559
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 171, 233, 418, 437
BspACI CCGC 3 cut(s) 209, 361, 514
BspANI GGCC 2 cut(s) 136, 559
BspCNI CTCAG 1 cut(s) 218
BspDI ATCGAT 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 384, 496
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 166, 228, 426
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 4 cut(s) 171, 233, 418, 437
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 289, 584
BstC8I GCNNGC 2 cut(s) 30, 81
BstDEI CTNAG 4 cut(s) 205, 414, 521, 561
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 4 cut(s) 174, 236, 421, 440
BstMAI GTCTC 2 cut(s) 262, 415
BstMBI GATC 4 cut(s) 171, 233, 418, 437
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 119, 320
BstSFI CTRYAG 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 232
BsuRI GGCC 2 cut(s) 136, 559
BsuTUI ATCGAT 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 294, 390, 546
Cac8I GCNNGC 2 cut(s) 30, 81
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 580
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 83, 124, 136, 383, 405, 466, 497, 559
CviKI_1 RGCY 8 cut(s) 83, 124, 136, 383, 405, 466, 497, 559
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 4 cut(s) 205, 414, 521, 561
DpnI GATC 4 cut(s) 173, 235, 420, 439
DpnII GATC 4 cut(s) 171, 233, 418, 437
Eco147I AGGCCT 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 32
FaiI YATR 6 cut(s) 30, 240, 263, 265, 270, 588
FatI CATG 1 cut(s) 28
FauI CCCGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 2 cut(s) 136, 559
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 5 cut(s) 60, 255, 272, 307, 448
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 151, 378
Hpy188I TCNGA 1 cut(s) 494
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 151, 378
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 289, 584
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 4 cut(s) 14, 32, 68, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 205, 414, 521, 561
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 171, 233, 418, 437
LmnI GCTCC 2 cut(s) 388, 494
LpnPI CCDG 8 cut(s) 106, 133, 296, 317, 334, 415, 426, 552
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 355, 504
MalI GATC 4 cut(s) 173, 235, 420, 439
MboI GATC 4 cut(s) 171, 233, 418, 437
MboII GAAGA 1 cut(s) 173
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 54, 87, 292, 565
MlyI GAGTC 3 cut(s) 264, 266, 301
MmeI TCCRAC 2 cut(s) 472, 525
MnlI CCTC 5 cut(s) 34, 126, 212, 361, 397
MseI TTAA 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 121, 322
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 322
NdeII GATC 4 cut(s) 171, 233, 418, 437
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 384, 496
NmuCI GTSAC 2 cut(s) 355, 504
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PceI AGGCCT 1 cut(s) 559
PfeI GAWTC 2 cut(s) 60, 448
PflMI CCANNNNNTGG 1 cut(s) 310
PleI GAGTC 3 cut(s) 263, 266, 301
PpsI GAGTC 3 cut(s) 263, 266, 301
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 384, 496
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 486
Sau3AI GATC 4 cut(s) 171, 233, 418, 437
SchI GAGTC 3 cut(s) 264, 266, 301
ScrFI CCNGG 2 cut(s) 121, 322
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 85, 122, 189, 204, 372, 407, 485, 492, 581
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 428, 467
SmoI CTYRAG 2 cut(s) 428, 467
SphI GCATGC 1 cut(s) 32
Sse9I AATT 4 cut(s) 54, 87, 292, 565
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 3 cut(s) 209, 361, 514
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 2 cut(s) 119, 320
TaaI ACNGT 2 cut(s) 289, 584
TaiI ACGT 1 cut(s) 581
TaqI TCGA 4 cut(s) 159, 170, 232, 349
TasI AATT 4 cut(s) 54, 87, 292, 565
TfiI GAWTC 2 cut(s) 60, 448
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 3 cut(s) 294, 397, 546
TseFI GTSAC 2 cut(s) 355, 504
Tsp45I GTSAC 2 cut(s) 355, 504
TspRI CASTG 3 cut(s) 294, 397, 546
Van91I CCANNNNNTGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 565
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.