pycom11g14230

photosystem I subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015925
Physical Location & Seq
Forward (+)
14118654 .. 14121176
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGCAGCAACCATGGCGACCGCATCAACCGTAATGGGGCTGTGCAGTTCCTCCCTCTCACCAAGCAGGACACGCCTCTCTTCAGCCTTTGTGAAGCCTATTGGGGTTGGCAACCCTCTGAGGCAAGTTAGGGCTTCTGGAGGAAGGTTCACATGTAGCTTTCAGAGAGATTGGCTGCGCAGGGATCTGAATGTGATTGGGTTCGGGTTGATCGGATGGTTGGCTCCGTCGAGCGTACCATTAATCGACGGTAAGAGTTTGACGGGGCTCTTCTTTGAGAGCATTGGTGCTGAGCTCGCTCACTTCCCCTCACCTCCTGCTCTCACTTCTCAATTTTGGTTGTGGCTGATAACATGGCACCTGGGGCTTTTCATCACCCTTACCTTTGGGCAGATTGGTTTCAAGGGGAGGACTGAAGATTACTTTGAAAAATGA

Protein Analysis

145

Amino Acids

15.77

Weight (kDa)

9.88

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaO_TMD PF22832 54 - 142 4.3e-43 PsaO transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08380
fragaria_vesca FvH4_3g25770
malus_domestica MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica Prupe.6G137400_v2.0.a1
pyrus_communis pycom03g10460 pycom11g14230
rosa_chinensis RchiOBHm_Chr5g0046981
rosa_laevigata RLG00000034456
rosa_multiflora Rmu_sc0005544.1_g000002
rosa_roxburghii Rroxscaffold_1G00034440
rosa_rugosa Rorug05G0233100
rosa_samantha Rh5BG321400 Rh5CG347500
rosa_wichuraiana Rw5G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 357
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 192
AcuI CTGAAG 2 cut(s) 66, 435
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 403, 428
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 159, 295
AluI AGCT 2 cut(s) 159, 295
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 5, 175
AseI ATTAAT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 51, 303, 367
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 270, 297
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 17, 162
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 362
BisI GCNGC 2 cut(s) 6, 176
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 7, 177
Bme1390I CCNGG 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 225, 359
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 12, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 12, 361
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 110, 282
BseXI GCAGC 2 cut(s) 17, 162
BsgI GTGCAG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 270, 297
Bsp143I GATC 2 cut(s) 184, 210
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 111, 283
BspLI GGNNCC 2 cut(s) 225, 359
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 12, 361
BssMI GATC 2 cut(s) 184, 210
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 31, 251
Bst6I CTCTTC 2 cut(s) 85, 275
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 119, 291
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 187, 213
BstMBI GATC 2 cut(s) 184, 210
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 14, 72, 296, 364
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 17, 162
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 236
CviAII CATG 3 cut(s) 13, 153, 354
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 119, 291
DpnI GATC 2 cut(s) 186, 212
DpnII GATC 2 cut(s) 184, 210
Eam1104I CTCTTC 2 cut(s) 85, 275
EarI CTCTTC 2 cut(s) 85, 275
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 270, 297
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 66, 435
EcoICRI GAGCTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 2 cut(s) 270, 297
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 156, 357
FaiI YATR 3 cut(s) 14, 154, 355
FatI CATG 3 cut(s) 12, 152, 353
Fnu4HI GCNGC 2 cut(s) 6, 176
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 2 cut(s) 270, 297
Fsp4HI GCNGC 2 cut(s) 6, 176
FspI TGCGCA 1 cut(s) 179
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 6, 176
GsuI CTGGAG 1 cut(s) 159
HhaI GCGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 16, 156, 357
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HphI GGTGA 3 cut(s) 51, 303, 367
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 4 cut(s) 120, 165, 189, 215
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 2 cut(s) 232, 251
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 31, 251
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 72, 296, 364
HpyF3I CTNAG 2 cut(s) 119, 291
Hsp92II CATG 3 cut(s) 16, 156, 357
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 184, 210
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 52, 123, 166, 330, 347, 374
Lsp1109I GCAGC 2 cut(s) 17, 162
LweI GCATC 1 cut(s) 32
MalI GATC 2 cut(s) 186, 212
MboI GATC 2 cut(s) 184, 210
MboII GAAGA 3 cut(s) 72, 262, 428
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 270, 297
MluCI AATT 1 cut(s) 332
MnlI CCTC 9 cut(s) 61, 65, 86, 114, 126, 134, 319, 324, 402
MseI TTAA 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 14, 72, 296, 364
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 184, 210
NlaIII CATG 3 cut(s) 16, 156, 357
NlaIV GGNNCC 2 cut(s) 225, 359
NsbI TGCGCA 1 cut(s) 179
NspI RCATGY 1 cut(s) 156
PciI ACATGT 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 7, 177
PscI ACATGT 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 225, 359
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 6, 176
Sau3AI GATC 2 cut(s) 184, 210
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 2 cut(s) 270, 297
SetI ASST 6 cut(s) 149, 161, 297, 316, 363, 386
SfaNI GCATC 1 cut(s) 32
Sse9I AATT 1 cut(s) 332
SsiI CCGC 1 cut(s) 21
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 31, 251
TaqI TCGA 2 cut(s) 230, 246
TasI AATT 1 cut(s) 332
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseI GCWGC 2 cut(s) 5, 175
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 216
VspI ATTAAT 1 cut(s) 242
XceI RCATGY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.