Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007136

Physical Location & Seq

Genomic Coordinates Reverse (-)

15291947 .. 15293733

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCATATGCTCTTGCTCATCAGTGGCAAGCTGGATCAAGACAGCTGCCAGCTCCCTCGGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTCAGGGATGGAGTTATGGTACATGAGAATGAATCAGCTGAAGATAAGAACGGCAGTACAACCCAGTTAAATTCTGCTGGCAAGAATTCAAATTCTCAATCAAATCTTTCAATTCAAAAAGCAGGTCCCTTTCATTCTGATGGCTGTGATTCTTCACCTAGTAAGTCATCTGGAATGCTTGAGGCATCCAATACTACCCAAATTGGAAAGCAAAAGTCGAAGCCGTATTTGGATGATGCAGCTGAACAAGGAAACTCCAAACCTGCTATTACTTCAAGATCGCATAGTAATCCAAAAGAGAGATCCACTGAGTCAGATAAACAGGCAAAGAAGCGGCTGTCTTTGCCTAATAGAGTTCCTTGGTCAGGGGGAAGCAATGGATCCCAAACTTCCAGACATCCTATAAGATCTAATGTCAAAGGGACGCCCAGTTCTCAGAAGCCCATCAAGGCTAGATCCAAACCCAGTGGAAGAGGGGATTCAAACCCTACGAAATCAGTCTCGCAAGCCGTTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

225

Amino Acids

24.36

Weight (kDa)

9.83

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22190 AT3G22190 AT3G22190 AT3G22190
fragaria_vesca	FvH4_3g26200
malus_domestica	MD03G1158100.v1.1 MD11G1174600.v1.1
prunus_persica	Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1 Prupe.6G146700_v2.0.a1
pyrus_communis	pycom03g11120 pycom11g14930
rosa_chinensis	RchiOBHm_Chr5g0048991
rosa_laevigata	RLG00000034576
rosa_multiflora	Rmu_sc0004058.1_g000010
rosa_roxburghii	Rroxscaffold_1G00032910
rosa_rugosa	Rorug05G0241700
rosa_samantha	Rh5AG321900 Rh5BG332200 Rh5CG357400 Rh5DG344000
rosa_wichuraiana	Rw5G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	266, 424
AciI	CCGC	2 cut(s)	136, 487
AclWI	GGATC	5 cut(s)	43, 450, 528, 541, 603
AcsI	RAATTY	3 cut(s)	223, 238, 244
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	2 cut(s)	174, 211
AfiI	CCNNNNNNNGG	2 cut(s)	127, 518
AgsI	TTSAA	6 cut(s)	68, 243, 264, 269, 429, 636
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
AluBI	AGCT	6 cut(s)	32, 46, 53, 84, 191, 395
AluI	AGCT	6 cut(s)	32, 46, 53, 84, 191, 395
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	5 cut(s)	43, 450, 528, 541, 603
Ama87I	CYCGRG	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	46, 81, 392
ApoI	RAATTY	3 cut(s)	223, 238, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	33, 93, 404
BccI	CCATC	5 cut(s)	102, 106, 155, 287, 605
BceAI	ACGGC	3 cut(s)	220, 361, 647
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	3 cut(s)	143, 312, 606
BfuAI	ACCTGC	2 cut(s)	266, 424
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	4 cut(s)	47, 82, 393, 488
BlsI	GCNGC	4 cut(s)	48, 83, 394, 489
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	280, 535
BmrFI	CCNGG	1 cut(s)	127
BmrI	ACTGGG	3 cut(s)	211, 576, 612
BmsI	GCATC	3 cut(s)	347, 379, 658
BmuI	ACTGGG	3 cut(s)	211, 576, 612
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	578
BsaJI	CCNNGG	4 cut(s)	57, 125, 126, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 518
Bse1I	ACTGG	4 cut(s)	101, 217, 582, 618
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	57, 125, 126, 512
BseGI	GGATG	5 cut(s)	117, 166, 338, 391, 550
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	127, 518
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	169, 453, 602
BseNI	ACTGG	4 cut(s)	101, 217, 582, 618
BseXI	GCAGC	3 cut(s)	33, 93, 404
BseYI	CCCAGC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	58
BslFI	GGGAC	3 cut(s)	108, 264, 589
BslI	CCNNNNNNNGG	2 cut(s)	127, 518
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	3 cut(s)	108, 264, 589
BsmI	GAATGC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
BspACI	CCGC	2 cut(s)	136, 487
BspCNI	CTCAG	3 cut(s)	168, 454, 601
BspLI	GGNNCC	2 cut(s)	280, 535
BspMI	ACCTGC	2 cut(s)	266, 424
BspPI	GGATC	5 cut(s)	43, 450, 528, 541, 603
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	4 cut(s)	101, 217, 582, 618
BssECI	CCNNGG	4 cut(s)	57, 125, 126, 512
BssMI	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	619
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	30, 51, 232, 660
BstDEI	CTNAG	3 cut(s)	155, 462, 588
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	5 cut(s)	117, 166, 338, 391, 550
BstKTI	GATC	6 cut(s)	38, 434, 458, 536, 563, 611
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	496, 668
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	33, 93, 404
BstX2I	RGATCY	4 cut(s)	455, 533, 560, 608
BstYI	RGATCY	4 cut(s)	455, 533, 560, 608
BtsCI	GGATG	5 cut(s)	117, 166, 338, 391, 550
BtsIMutI	CAGTG	3 cut(s)	29, 459, 625
BveI	ACCTGC	2 cut(s)	266, 424
Cac8I	GCNNGC	4 cut(s)	30, 51, 232, 660
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	173, 210
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	1 cut(s)	176
CviQI	GTAC	2 cut(s)	173, 210
DdeI	CTNAG	3 cut(s)	155, 462, 588
DpnI	GATC	6 cut(s)	37, 433, 457, 535, 562, 610
DpnII	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	1 cut(s)	179
FaiI	YATR	7 cut(s)	7, 9, 170, 177, 438, 557, 673
FaqI	GGGAC	3 cut(s)	108, 264, 589
FatI	CATG	1 cut(s)	175
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	47, 82, 393, 488
FokI	GGATG	5 cut(s)	124, 173, 325, 398, 537
Fsp4HI	GCNGC	4 cut(s)	47, 82, 393, 488
FspBI	CTAG	3 cut(s)	143, 312, 606
GluI	GCNGC	4 cut(s)	47, 82, 393, 488
GsaI	CCCAGC	1 cut(s)	88
HgaI	GACGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	4 cut(s)	185, 302, 464, 632
HphI	GGTGA	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	292, 469, 591
Hpy188III	TCNNGA	5 cut(s)	39, 143, 324, 429, 546
HpyCH4V	TGCA	2 cut(s)	392, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	496, 668
HpyF3I	CTNAG	3 cut(s)	155, 462, 588
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	3 cut(s)	33, 93, 404
LweI	GCATC	3 cut(s)	347, 379, 658
MaeI	CTAG	3 cut(s)	143, 312, 606
MalI	GATC	6 cut(s)	37, 433, 457, 535, 562, 610
MboI	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
MboII	GAAGA	3 cut(s)	206, 297, 636
MflI	RGATCY	4 cut(s)	455, 533, 560, 608
MluCI	AATT	5 cut(s)	223, 238, 244, 264, 354
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	67, 328, 620
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	2 cut(s)	150, 221
MslI	CAYNNNNRTG	2 cut(s)	180, 291
MspA1I	CMGCKG	4 cut(s)	46, 84, 191, 395
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	496, 668
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	280, 535
NsiI	ATGCAT	1 cut(s)	673
PasI	CCCWGGG	1 cut(s)	126
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	185, 302, 632
PkrI	GCNGC	4 cut(s)	48, 83, 394, 489
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	280, 535
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	4 cut(s)	455, 533, 560, 608
PvuII	CAGCTG	4 cut(s)	46, 84, 191, 395
RsaI	GTAC	2 cut(s)	174, 211
RsaNI	GTAC	2 cut(s)	173, 210
RseI	CAYNNNNRTG	2 cut(s)	180, 291
SaqAI	TTAA	2 cut(s)	150, 221
SatI	GCNGC	4 cut(s)	47, 82, 393, 488
Sau3AI	GATC	6 cut(s)	35, 431, 455, 533, 560, 608
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	9 cut(s)	34, 48, 55, 86, 193, 280, 313, 397, 418
SfaNI	GCATC	3 cut(s)	347, 379, 658
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	180, 291
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	223, 238, 244, 264, 354
SsiI	CCGC	2 cut(s)	136, 487
SspMI	CTAG	3 cut(s)	143, 312, 606
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	512
TaqI	TCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	223, 238, 244, 264, 354
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	3 cut(s)	185, 302, 632
Tru1I	TTAA	2 cut(s)	150, 221
Tru9I	TTAA	2 cut(s)	150, 221
TscAI	CASTG	3 cut(s)	29, 466, 625
TseI	GCWGC	3 cut(s)	46, 81, 392
TspDTI	ATGAA	2 cut(s)	198, 275
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	3 cut(s)	29, 466, 625
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	3 cut(s)	223, 238, 244
XbaI	TCTAGA	1 cut(s)	142
XspI	CTAG	3 cut(s)	143, 312, 606
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.