Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008735

Physical Location & Seq

Genomic Coordinates Reverse (-)

15485951 .. 15487324

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGTTGGCAACCCATCAGCTTGAAGGATCCCACTGGCCAAGAACTGCTAGAGGCAGTAGTGCAAGAGAGAAGTATTAGGTCTAATCCACCTCGAAATACTACAATATTTCATCATCCAACTCTTGGTGATTTTGAATTGCAGCATTTACCCATGGGTGTAAATGATGCTGAACTTGAAGAGCGTATAATTCAGCACTTAGCTGCTGCTGCTGCAATGGGTCGTTCACGCCACATTGCCAGAAGGGAAGGACAAAGAAATAGGTCATCAGCTCAAGGTCGCCAGCAATACCTGGTCTTCTCTACCCATCCTAGCACACCTCCGGCTCCTGCTTCATCTTCCCATGATCAGATGGAAGAAGGTGAACCGGCTCCTTCAGTTGCAGTAACTTTCCCTTCGCCTCCTACGAATATAGGGGAAGAATTGTCTCAAATGACAACTCCCGTACATTCGTCACAATCTGGTCCTGTGGCTGCCTCTGTGTCTGGATCTAGTGTTTCTTCTCCAAATCAACAAGGATCTTCCATGAGCAATAGGAGGTCGCCTAGCCAGTCATCCCCAAGTACCCAAGATAGAGCTGGCCCATCAGACATGCAATCATTTTCAGACTCTCTGAAAGCTCGATTTAATGCAGTATCAACGAGATACAAAGACTCAATTTCAAAAAGCACAAAAGGTTGGAAGGAGAGATTGTTCTCTCGCAATACTTCCATGGCAGATCTTGGTTCGGAAGTTAAAAGAGAGGTTAATGCAGGGTTTGAAACTGTATCCCGCATGATGGAGCGTCTGGAAACAAAAGACAATAACAGAGTTCATGATGCTTCTGTGTCAAATAGTTTAGACAGTCCGGTTTCTGGATCAGACAATCGACAGATATCAGAAAGTGATGGTGAAACTTTTTTAAATGACCACAATAAACCAGCTGCTTGTGCTACAGGTTCTAGTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

318

Amino Acids

34.36

Weight (kDa)

6.21

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22000 AT5G22000 AT5G22000 AT5G22000
fragaria_vesca	FvH4_3g26760 FvH4_3g26760
malus_domestica	MD03G1160200.v1.1 MD11G1176400.v1.1
prunus_persica	Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1
pyrus_communis	pycom03g11270 pycom11g15060
rosa_chinensis	RchiOBHm_Chr5g0049191
rosa_laevigata	RLG00000034598
rosa_multiflora	Rmu_sc0001440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032540
rosa_rugosa	Rorug05G0245500 Rorug05G0245600.1
rosa_samantha	Rh5AG323500 Rh5BG333900 Rh5DG345600
rosa_wichuraiana	Rw5G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	772
AclWI	GGATC	5 cut(s)	23, 36, 496, 526, 865
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	447, 565
AfiI	CCNNNNNNNGG	3 cut(s)	125, 778, 854
AgsI	TTSAA	6 cut(s)	25, 137, 179, 663, 761, 948
AjnI	CCWGG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AluBI	AGCT	6 cut(s)	21, 203, 272, 578, 620, 923
AluI	AGCT	6 cut(s)	21, 203, 272, 578, 620, 923
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	5 cut(s)	23, 36, 496, 526, 865
AoxI	GGCC	2 cut(s)	37, 580
ApeKI	GCWGC	7 cut(s)	142, 203, 206, 209, 212, 473, 923
AspS9I	GGNCC	2 cut(s)	464, 581
AsuHPI	GGTGA	3 cut(s)	140, 374, 902
AvaII	GGWCC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	7 cut(s)	154, 190, 193, 196, 199, 460, 910
BccI	CCATC	6 cut(s)	23, 315, 346, 592, 772, 881
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	778
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	5 cut(s)	50, 312, 492, 546, 942
BfmI	CTRYAG	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	7 cut(s)	143, 204, 207, 210, 213, 474, 924
BlsI	GCNGC	7 cut(s)	144, 205, 208, 211, 214, 475, 925
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	464, 581
BmiI	GGNNCC	3 cut(s)	30, 327, 372
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	2 cut(s)	157, 808
BpiI	GAAGAC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	153, 711
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 778, 854
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	40, 550
Bse3DI	GCAATG	2 cut(s)	222, 234
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	153, 711
BseGI	GGATG	3 cut(s)	115, 307, 554
BseLI	CCNNNNNNNGG	3 cut(s)	125, 778, 854
BseMI	GCAATG	2 cut(s)	222, 234
BseNI	ACTGG	2 cut(s)	40, 550
BseXI	GCAGC	7 cut(s)	154, 190, 193, 196, 199, 460, 910
BshFI	GGCC	2 cut(s)	39, 582
BsiSI	CCGG	3 cut(s)	323, 368, 848
BslI	CCNNNNNNNGG	3 cut(s)	125, 778, 854
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	39, 582
Bsp143I	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
Bsp19I	CCATGG	2 cut(s)	153, 711
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	2 cut(s)	39, 582
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	3 cut(s)	30, 327, 372
BspPI	GGATC	5 cut(s)	23, 36, 496, 526, 865
BspQI	GCTCTTC	1 cut(s)	174
BsrDI	GCAATG	2 cut(s)	222, 234
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	40, 550
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	153, 711
BssMI	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
BssT1I	CCWWGG	2 cut(s)	153, 711
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	766, 845
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	284, 580
BstDEI	CTNAG	1 cut(s)	199
BstDSI	CCRYGG	2 cut(s)	153, 711
BstF5I	GGATG	3 cut(s)	115, 307, 554
BstKTI	GATC	6 cut(s)	31, 349, 491, 521, 721, 860
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 212, 929
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	7 cut(s)	154, 190, 193, 196, 199, 460, 910
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	4 cut(s)	28, 488, 518, 718
BstYI	RGATCY	4 cut(s)	28, 488, 518, 718
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	39, 582
BtgI	CCRYGG	2 cut(s)	153, 711
BtsCI	GGATG	3 cut(s)	115, 307, 554
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	284, 580
CciI	TCATGA	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	464, 581
CseI	GACGC	1 cut(s)	773
CsiI	ACCWGGT	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	446, 564
CviAII	CATG	7 cut(s)	154, 344, 526, 592, 712, 775, 815
CviQI	GTAC	2 cut(s)	446, 564
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	6 cut(s)	30, 348, 490, 520, 720, 859
DpnII	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	153, 711
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	2 cut(s)	153, 711
ErhI	CCWWGG	2 cut(s)	153, 711
FaeI	CATG	7 cut(s)	157, 347, 529, 595, 715, 778, 818
FaiI	YATR	9 cut(s)	155, 188, 345, 413, 527, 593, 713, 776, 816
FatI	CATG	7 cut(s)	153, 343, 525, 591, 711, 774, 814
FauI	CCCGC	1 cut(s)	779
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	7 cut(s)	143, 204, 207, 210, 213, 474, 924
FokI	GGATG	3 cut(s)	102, 294, 541
Fsp4HI	GCNGC	7 cut(s)	143, 204, 207, 210, 213, 474, 924
FspBI	CTAG	5 cut(s)	50, 312, 492, 546, 942
GluI	GCNGC	7 cut(s)	143, 204, 207, 210, 213, 474, 924
HaeIII	GGCC	2 cut(s)	39, 582
HapII	CCGG	3 cut(s)	323, 368, 848
HgaI	GACGC	1 cut(s)	773
Hin1II	CATG	7 cut(s)	157, 347, 529, 595, 715, 778, 818
HinfI	GANTC	2 cut(s)	608, 653
HpaII	CCGG	3 cut(s)	323, 368, 848
HphI	GGTGA	3 cut(s)	140, 374, 902
Hpy166II	GTNNAC	2 cut(s)	227, 365
Hpy188I	TCNGA	7 cut(s)	351, 589, 607, 615, 730, 862, 880
Hpy188III	TCNNGA	4 cut(s)	486, 788, 815, 855
Hpy8I	GTNNAC	2 cut(s)	227, 365
HpyAV	CCTTC	7 cut(s)	19, 237, 242, 353, 384, 405, 676
HpyCH4III	ACNGT	2 cut(s)	766, 845
HpyCH4V	TGCA	7 cut(s)	64, 142, 215, 383, 595, 632, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 212, 929
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	7 cut(s)	157, 347, 529, 595, 715, 778, 818
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	331, 376, 781
Lsp1109I	GCAGC	7 cut(s)	154, 190, 193, 196, 199, 460, 910
LweI	GCATC	2 cut(s)	157, 808
MabI	ACCWGGT	1 cut(s)	291
MaeI	CTAG	5 cut(s)	50, 312, 492, 546, 942
MaeIII	GTNAC	2 cut(s)	385, 453
MalI	GATC	6 cut(s)	30, 348, 490, 520, 720, 859
MboI	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
MboII	GAAGA	7 cut(s)	191, 289, 330, 368, 431, 492, 513
MflI	RGATCY	4 cut(s)	28, 488, 518, 718
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	5 cut(s)	137, 189, 422, 657, 949
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	602, 647
MmeI	TCCRAC	2 cut(s)	143, 659
MnlI	CCTC	7 cut(s)	46, 102, 330, 411, 487, 531, 736
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	4 cut(s)	627, 735, 747, 902
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	3 cut(s)	323, 368, 848
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	209, 212, 929
NcoI	CCATGG	2 cut(s)	153, 711
NdeII	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
NlaIII	CATG	7 cut(s)	157, 347, 529, 595, 715, 778, 818
NlaIV	GGNNCC	3 cut(s)	30, 327, 372
NmuCI	GTSAC	1 cut(s)	453
NspI	RCATGY	1 cut(s)	595
PagI	TCATGA	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	7 cut(s)	144, 205, 208, 211, 214, 475, 925
PleI	GAGTC	2 cut(s)	602, 647
PpsI	GAGTC	2 cut(s)	602, 647
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	30, 327, 372
PspPI	GGNCC	2 cut(s)	464, 581
PsuI	RGATCY	4 cut(s)	28, 488, 518, 718
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	447, 565
RsaNI	GTAC	2 cut(s)	446, 564
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	627, 735, 747, 902
SatI	GCNGC	7 cut(s)	143, 204, 207, 210, 213, 474, 924
Sau3AI	GATC	6 cut(s)	28, 346, 488, 518, 718, 857
Sau96I	GGNCC	2 cut(s)	464, 581
SchI	GAGTC	2 cut(s)	602, 647
ScrFI	CCNGG	1 cut(s)	293
SexAI	ACCWGGT	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	157, 808
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	137, 189, 422, 657, 949
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	5 cut(s)	50, 312, 492, 546, 942
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	153, 711
TaaI	ACNGT	2 cut(s)	766, 845
TaqI	TCGA	3 cut(s)	94, 622, 868
TasI	AATT	5 cut(s)	137, 189, 422, 657, 949
Tru1I	TTAA	4 cut(s)	627, 735, 747, 902
Tru9I	TTAA	4 cut(s)	627, 735, 747, 902
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	7 cut(s)	142, 203, 206, 209, 212, 473, 923
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	101, 324, 803
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	464
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	5 cut(s)	50, 312, 492, 546, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.