Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011606

Physical Location & Seq

Genomic Coordinates Reverse (-)

18075761 .. 18076369

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTGGTGTTGTCTGGATGGTGGGACAGTATCAAATCAAACCACAGAAAGGTGGTTAGTTATGGTGGATGGGTTGCTCTGGAAGGTTTACCGCCGCACCTTTGGACCAATGATTTTTTTCCAAAAGATTAGCGATGCATGCGGTGGTCTGGTAGAAGTTAACCGTAGAACATCTAACTTTGGTTTTTTGCTTGAAGCAAAGTTAAAAATCAAACCCAACAACACTGGCTTTATTCCAGAGTTCGTAAATGTGGCAGATGGGGAATCAGTATTCAGGAGGATCACCGGAATTATCCCTCCGGCGAAGGCAGCTTTACAACAGACAACCCCTATATCGGGGACACGTGTCTGCTTTCAGATTGGAGAATTTGAATGCCCTATCATTGTTGGATCTGAAAGAAAACAAGGTGAGAGCATGCACGTGACTGAGGGTGCACGGATTGAGGAGCCTGTAATTCCTGTCTCTACTTTTTCTGTAAGAAAGCAAGGTGAGCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

8.32

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011606)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G281000_v2.0.a1
pyrus_communis	pycom11g16490
rosa_multiflora	Rmu_sc0001581.1_g000018 Rmu_sc0003413.1_g000009 Rmu_sc0004660.1_g000002 Rmu_sc0005999.1_g000003 Rmu_sc0007553.1_g000007 Rmu_ssc0000386.1_g000046
rosa_roxburghii	Rroxscaffold_4G00308860 Rroxscaffold_4G00308870 Rroxscaffold_4G00326360 Rroxscaffold_5G00332780 Rroxscaffold_5G00332790 Rroxscaffold_6G00399230
rosa_rugosa	Rorug05G0540600
rosa_samantha	Rh3BG286100 Rh6AG109500
rosa_wichuraiana	Rw2G021740 Rw6G011820 Rw7G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	91, 94, 141
AclWI	GGATC	2 cut(s)	287, 397
AcsI	RAATTY	1 cut(s)	365
AcvI	CACGTG	2 cut(s)	344, 421
AfiI	CCNNNNNNNGG	3 cut(s)	48, 334, 335
AflIII	ACRYGT	2 cut(s)	341, 343
AgsI	TTSAA	2 cut(s)	194, 371
AluBI	AGCT	2 cut(s)	311, 493
AluI	AGCT	2 cut(s)	311, 493
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	287, 397
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	274, 419, 500
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	436
BbrPI	CACGTG	2 cut(s)	344, 421
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	3 cut(s)	11, 62, 251
BcoDI	GTCTC	1 cut(s)	466
BisI	GCNGC	2 cut(s)	94, 309
BlsI	GCNGC	2 cut(s)	95, 310
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	447
BmsI	GCATC	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	344
BsaAI	YACGTR	2 cut(s)	344, 421
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 334, 335
Bse1I	ACTGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	22, 73
BseLI	CCNNNNNNNGG	3 cut(s)	48, 334, 335
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	285, 299
BslFI	GGGAC	2 cut(s)	37, 352
BslI	CCNNNNNNNGG	3 cut(s)	48, 334, 335
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	37, 352
BsmI	GAATGC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	279, 389
BspACI	CCGC	3 cut(s)	91, 94, 141
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	287, 397
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	279, 389
Bst4CI	ACNGT	2 cut(s)	28, 164
BstBAI	YACGTR	2 cut(s)	344, 421
BstC8I	GCNNGC	2 cut(s)	139, 416
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	22, 73
BstKTI	GATC	2 cut(s)	282, 392
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	279, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 308, 490
BstNSI	RCATGY	2 cut(s)	141, 418
BstPAI	GACNNNNGTC	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	22, 73
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	139, 416
Cfr13I	GGNCC	1 cut(s)	104
CviAII	CATG	2 cut(s)	138, 415
CviJI	RGCY	4 cut(s)	228, 311, 448, 493
CviKI_1	RGCY	4 cut(s)	228, 311, 448, 493
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	281, 391
DpnII	GATC	2 cut(s)	279, 389
Eco47I	GGWCC	1 cut(s)	104
Eco72I	CACGTG	2 cut(s)	344, 421
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	2 cut(s)	141, 418
FaiI	YATR	4 cut(s)	62, 139, 332, 416
FaqI	GGGAC	2 cut(s)	37, 352
FatI	CATG	2 cut(s)	137, 414
Fnu4HI	GCNGC	2 cut(s)	94, 309
FokI	GGATG	2 cut(s)	29, 80
Fsp4HI	GCNGC	2 cut(s)	94, 309
GluI	GCNGC	2 cut(s)	94, 309
HapII	CCGG	2 cut(s)	285, 299
Hin1II	CATG	2 cut(s)	141, 418
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	263
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	285, 299
HphI	GGTGA	3 cut(s)	274, 419, 500
Hpy166II	GTNNAC	3 cut(s)	88, 160, 434
Hpy188I	TCNGA	2 cut(s)	357, 394
Hpy188III	TCNNGA	4 cut(s)	14, 79, 236, 274
Hpy8I	GTNNAC	3 cut(s)	88, 160, 434
HpyAV	CCTTC	2 cut(s)	76, 298
HpyCH4III	ACNGT	2 cut(s)	28, 164
HpyCH4IV	ACGT	2 cut(s)	343, 420
HpyCH4V	TGCA	3 cut(s)	137, 418, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 308, 490
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	343, 420
Hsp92II	CATG	2 cut(s)	141, 418
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	279, 389
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	9 cut(s)	64, 134, 210, 249, 259, 298, 312, 462, 471
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	2 cut(s)	343, 420
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	281, 391
MboI	GATC	2 cut(s)	279, 389
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	3 cut(s)	288, 365, 453
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	270, 306, 421, 436
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	2 cut(s)	159, 203
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	2 cut(s)	285, 299
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	138, 308, 490
NdeII	GATC	2 cut(s)	279, 389
NlaIII	CATG	2 cut(s)	141, 418
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	2 cut(s)	141, 418
PaeI	GCATGC	2 cut(s)	141, 418
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	95, 310
PmaCI	CACGTG	2 cut(s)	344, 421
PmlI	CACGTG	2 cut(s)	344, 421
Ppu21I	YACGTR	2 cut(s)	344, 421
PshAI	GACNNNNGTC	1 cut(s)	344
PspCI	CACGTG	2 cut(s)	344, 421
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	159, 203
SatI	GCNGC	2 cut(s)	94, 309
Sau3AI	GATC	2 cut(s)	279, 389
Sau96I	GGNCC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	9 cut(s)	53, 87, 101, 313, 346, 409, 423, 490, 495
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	419
SphI	GCATGC	2 cut(s)	141, 418
Sse9I	AATT	3 cut(s)	288, 365, 453
SsiI	CCGC	3 cut(s)	91, 94, 141
TaaI	ACNGT	2 cut(s)	28, 164
TaiI	ACGT	2 cut(s)	346, 423
TasI	AATT	3 cut(s)	288, 365, 453
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	159, 203
Tru9I	TTAA	2 cut(s)	159, 203
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	141, 418
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.