Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011606

Physical Location & Seq

Genomic Coordinates Forward (+)

21039161 .. 21041333

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGAGGAGAAGCTTAACACATTCATGTTTGGGAAGAGCAAGAAGGAAACCAAGCAAGTCCTAGAGAAAACAAGAAGTCAAAAACAGAGGGAGCGATTCCCAGAAGATCAGTTGGAAAGTAATCAAAGATTCAGGACGCAAGGAGGTACTAAGATGCAGAAGTTGGCGGATACCAGCAAATCTTGGGCTTCTGTAGTGATTTGTGAAAGGCAGGCCGTTTTTCAATCTTGGAAGAACATTGAAAGATGCTTGTCAAAGTGGTTGGGCAAAGAGGTGGAGCTTAATCCGTATCAAAACAACAGAGCTTTCTTCGTCTGCGAAAATGGTGAGGAGGCAGAACAGATTGTTAGTCATGGAAAAACACCACTGCTGGGGCAACCAGAGATTCTTCTTATTGAGTGGACACAAGGACTGACCGACAATATGAAAAAGGTGGTGAGTTACGGAGGGTGGATAGCAGTCAAGGGTCTCCCATTTCACTGGTGGTCACAGAAATACTTTAAGCAGATTGGTGATACTTGTGGTGGATTGCTTGAAGTGGATAACAAGACGATTGGCTTCAAACATTTGTATGAAGCTCGGATCAAGGTCAGTCAGAACGAGACTGGATTCCTGCCTGAACTAATAAGGCTGACAGAAGTTTCAAGAGCGTTCCATTTCAGTCTGGAGGTTTTACAGGCCCATGTGGGCTTCAAGAAGGCCCCACTTGAGGCTGGAGGTTCAGGGGCCCAACCAGGCTTCAGGCAGGCTCCGCCTGAGGCTGGAGTTTTGGACGGACCTCCAAGCATGGAAACCAATCTTATTTCAATTTCTGGAAAAGTTTCAAGAGACTTATTTAGGGTATTGAAGCCTGAAGATTTTGGAGGCAGAAGACATTTGCAGATAGAACAATCCATGGGAGATAAGAGGGCAATTAGTAACTCAGTGTTAAGAGGGGAAGATGAAGACAAAGATAGAGTAGAAGATGAAGAGGAAGAAGAAGTTGAAGGAGAAGCTGAAGACATTGTGGAACAACAAGGAGATAAAGAAATCCTTGGAGAGGAGAACGGAGGCAATGGAGGAATTGTGGAAAATAGAGAGAAGCAAGACAGTGACTGGAAATCATTTCAAGAAGATATAGAAGATCCTATTGAAACAGATGGGGAGGAAAACTTGTCTGTAGATATTGATAGGGATGACTTGGTCAGGTCAGATAGCTCACATGATGAGTGCAGCGATACAGAGTTATCCTCTGTTGAAGGAAAACAAGATGCTGACCCACTGGAGGATGAGGAATTCAATTTAGAAGGCTTTATGGAAGGACAAACAACTAGTAACACTACAGTAGCAATTCAAGAAGATGGAGGAAAGGTGGGGGATGAGAGGAATGTTTCTCGTGTACAGAAAACAAAAAATGATGGAGCAATTGCATTGGGAAAAGATGGACAGGTTAATCAAGCAAGGAAAAATATTCAATCATTGACCAAGCAACTTCAGAGAAGAGAGGGGACAAAGCCAACTAACGAGAACTCACACCAGACTCAATGGAAGGTCTCAGGCCTGCAAAAAATGGGAAAAAATTGGGAAGTTCCTAGCGCCTATGAAGCTGCAAGTATATGCAAGGAAAAAACAGAAGAGCAAGAACAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

543

Amino Acids

61.22

Weight (kDa)

4.86

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011606)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G281000_v2.0.a1
pyrus_communis	pycom11g16490
rosa_multiflora	Rmu_sc0001581.1_g000018 Rmu_sc0003413.1_g000009 Rmu_sc0004660.1_g000002 Rmu_sc0005999.1_g000003 Rmu_sc0007553.1_g000007 Rmu_ssc0000386.1_g000046
rosa_roxburghii	Rroxscaffold_4G00308860 Rroxscaffold_4G00308870 Rroxscaffold_4G00326360 Rroxscaffold_5G00332780 Rroxscaffold_5G00332790 Rroxscaffold_6G00399230
rosa_rugosa	Rorug05G0540600
rosa_samantha	Rh3BG286100 Rh6AG109500
rosa_wichuraiana	Rw2G021740 Rw6G011820 Rw7G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	167, 752
AclWI	GGATC	2 cut(s)	590, 1118
AcsI	RAATTY	1 cut(s)	1274
AcuI	CTGAAG	4 cut(s)	724, 873, 1017, 1457
AfaI	GTAC	2 cut(s)	148, 1380
AfiI	CCNNNNNNNGG	5 cut(s)	371, 709, 761, 1039, 1264
AhlI	ACTAGT	1 cut(s)	1310
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	7 cut(s)	13, 280, 305, 578, 995, 1197, 1586
AluI	AGCT	7 cut(s)	13, 280, 305, 578, 995, 1197, 1586
Alw26I	GTCTC	4 cut(s)	473, 596, 822, 1537
AlwI	GGATC	2 cut(s)	590, 1118
AlwNI	CAGNNNCTG	1 cut(s)	1095
AoxI	GGCC	5 cut(s)	213, 678, 699, 726, 1537
ApaI	GGGCCC	1 cut(s)	730
ApeKI	GCWGC	2 cut(s)	1212, 1586
ApoI	RAATTY	1 cut(s)	1274
Asp700I	GAANNNNTTC	1 cut(s)	820
AspLEI	GCGC	1 cut(s)	1577
AspS9I	GGNCC	5 cut(s)	679, 700, 726, 727, 776
AsuHPI	GGTGA	3 cut(s)	338, 448, 524
AvaII	GGWCC	1 cut(s)	776
AxyI	CCTNAGG	1 cut(s)	756
BaeGI	GKGCMC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	730
BauI	CACGAG	1 cut(s)	1374
BbsI	GAAGAC	3 cut(s)	877, 951, 1005
BbvI	GCAGC	2 cut(s)	1224, 1573
BccI	CCATC	4 cut(s)	1133, 1334, 1391, 1415
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	4 cut(s)	473, 596, 822, 1537
BcuI	ACTAGT	1 cut(s)	1310
BfaI	CTAG	3 cut(s)	62, 1311, 1572
BfmI	CTRYAG	3 cut(s)	192, 1158, 1320
BfoI	RGCGCY	1 cut(s)	1578
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	1213, 1587
BlsI	GCNGC	2 cut(s)	1214, 1588
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	5 cut(s)	679, 700, 726, 727, 776
BmiI	GGNNCC	4 cut(s)	702, 727, 728, 750
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	144, 236, 1240
BpiI	GAAGAC	3 cut(s)	877, 951, 1005
BplI	GAGNNNNNCTC	2 cut(s)	1214, 1246
BpmI	CTGGAG	4 cut(s)	686, 735, 783, 1283
BpuEI	CTTGAG	1 cut(s)	728
BsaI	GGTCTC	2 cut(s)	473, 1537
BsaJI	CCNNGG	2 cut(s)	894, 1033
BsaXI	ACNNNNNCTCC	4 cut(s)	1050, 1080, 1335, 1365
Bsc4I	CCNNNNNNNGG	5 cut(s)	371, 709, 761, 1039, 1264
Bse1I	ACTGG	4 cut(s)	485, 610, 1100, 1266
Bse21I	CCTNAGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	1060
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	894, 1033
BseGI	GGATG	3 cut(s)	1180, 1273, 1363
BseLI	CCNNNNNNNGG	5 cut(s)	371, 709, 761, 1039, 1264
BseMI	GCAATG	1 cut(s)	1060
BseMII	CTCAG	3 cut(s)	747, 936, 1548
BseNI	ACTGG	4 cut(s)	485, 610, 1100, 1266
BseRI	GAGGAG	3 cut(s)	20, 344, 1055
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	1224, 1573
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	1231
BshFI	GGCC	5 cut(s)	215, 680, 701, 728, 1539
BslFI	GGGAC	1 cut(s)	1501
BslI	CCNNNNNNNGG	5 cut(s)	371, 709, 761, 1039, 1264
BsmAI	GTCTC	4 cut(s)	473, 596, 822, 1537
BsmFI	GGGAC	1 cut(s)	1501
BsnI	GGCC	5 cut(s)	215, 680, 701, 728, 1539
Bso31I	GGTCTC	2 cut(s)	473, 1537
Bsp120I	GGGCCC	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp1407I	TGTACA	1 cut(s)	1378
Bsp143I	GATC	3 cut(s)	106, 582, 1123
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	2 cut(s)	167, 752
BspANI	GGCC	5 cut(s)	215, 680, 701, 728, 1539
BspCNI	CTCAG	3 cut(s)	748, 935, 1547
BspLI	GGNNCC	4 cut(s)	702, 727, 728, 750
BspPI	GGATC	2 cut(s)	590, 1118
BspQI	GCTCTTC	2 cut(s)	29, 1608
BspTNI	GGTCTC	2 cut(s)	473, 1537
BsrDI	GCAATG	1 cut(s)	1060
BsrGI	TGTACA	1 cut(s)	1378
BsrI	ACTGG	4 cut(s)	485, 610, 1100, 1266
BssECI	CCNNGG	2 cut(s)	894, 1033
BssMI	GATC	3 cut(s)	106, 582, 1123
BssSI	CACGAG	1 cut(s)	1374
BssT1I	CCWWGG	2 cut(s)	894, 1033
Bst2BI	CACGAG	1 cut(s)	1374
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	1091, 1324
Bst6I	CTCTTC	4 cut(s)	29, 963, 1474, 1608
BstAUI	TGTACA	1 cut(s)	1378
BstC8I	GCNNGC	3 cut(s)	213, 747, 1541
BstDEI	CTNAG	4 cut(s)	150, 756, 922, 1534
BstDSI	CCRYGG	1 cut(s)	894
BstENI	CCTNNNNNAGG	1 cut(s)	1037
BstF5I	GGATG	3 cut(s)	1180, 1273, 1363
BstH2I	RGCGCY	1 cut(s)	1578
BstHHI	GCGC	1 cut(s)	1577
BstKTI	GATC	3 cut(s)	109, 585, 1126
BstMAI	GTCTC	4 cut(s)	473, 596, 822, 1537
BstMBI	GATC	3 cut(s)	106, 582, 1123
BstMWI	GCNNNNNNNGC	3 cut(s)	751, 1583, 1624
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	3 cut(s)	192, 1158, 1320
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	2 cut(s)	1224, 1573
BstV2I	GAAGAC	3 cut(s)	877, 951, 1005
BstX2I	RGATCY	1 cut(s)	1123
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	1123
Bsu36I	CCTNAGG	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	5 cut(s)	215, 680, 701, 728, 1539
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	3 cut(s)	1180, 1273, 1363
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	5 cut(s)	365, 478, 930, 1096, 1259
Cac8I	GCNNGC	3 cut(s)	213, 747, 1541
CaiI	CAGNNNCTG	1 cut(s)	1095
CfoI	GCGC	1 cut(s)	1577
Cfr13I	GGNCC	5 cut(s)	679, 700, 726, 727, 776
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	147, 1379
CviAII	CATG	6 cut(s)	25, 353, 683, 787, 895, 1202
CviQI	GTAC	2 cut(s)	147, 1379
DdeI	CTNAG	4 cut(s)	150, 756, 922, 1534
DpnI	GATC	3 cut(s)	108, 584, 1125
DpnII	GATC	3 cut(s)	106, 582, 1123
Eam1104I	CTCTTC	4 cut(s)	29, 963, 1474, 1608
EarI	CTCTTC	4 cut(s)	29, 963, 1474, 1608
EciI	GGCGGA	2 cut(s)	182, 741
Eco130I	CCWWGG	2 cut(s)	894, 1033
Eco147I	AGGCCT	1 cut(s)	1539
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	2 cut(s)	473, 1537
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	4 cut(s)	724, 873, 1017, 1457
Eco81I	CCTNAGG	1 cut(s)	756
EcoNI	CCTNNNNNAGG	1 cut(s)	1037
EcoO109I	RGGNCCY	2 cut(s)	700, 726
EcoRI	GAATTC	1 cut(s)	1274
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	894, 1033
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	2 cut(s)	894, 1033
FaeI	CATG	6 cut(s)	28, 356, 686, 790, 898, 1205
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FaqI	GGGAC	1 cut(s)	1501
FatI	CATG	6 cut(s)	24, 352, 682, 786, 894, 1201
Fnu4HI	GCNGC	2 cut(s)	1213, 1587
FokI	GGATG	3 cut(s)	1187, 1280, 1370
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	2 cut(s)	1213, 1587
FspBI	CTAG	3 cut(s)	62, 1311, 1572
GlaI	GCGC	1 cut(s)	1576
GluI	GCNGC	2 cut(s)	1213, 1587
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	4 cut(s)	686, 735, 783, 1283
HaeII	RGCGCY	1 cut(s)	1578
HaeIII	GGCC	5 cut(s)	215, 680, 701, 728, 1539
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	1577
Hin1II	CATG	6 cut(s)	28, 356, 686, 790, 898, 1205
Hin6I	GCGC	1 cut(s)	1575
HinP1I	GCGC	1 cut(s)	1575
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	96, 129, 385, 609, 1519
HphI	GGTGA	3 cut(s)	338, 448, 524
Hpy166II	GTNNAC	2 cut(s)	402, 1379
Hpy188I	TCNGA	4 cut(s)	582, 597, 1192, 1476
Hpy188III	TCNNGA	8 cut(s)	133, 645, 665, 694, 813, 825, 1109, 1334
Hpy8I	GTNNAC	2 cut(s)	402, 1379
HpyAV	CCTTC	7 cut(s)	37, 691, 980, 1232, 1280, 1292, 1522
HpyCH4III	ACNGT	2 cut(s)	1091, 1324
HpyCH4V	TGCA	7 cut(s)	157, 880, 1212, 1409, 1543, 1589, 1599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	751, 1583, 1624
HpyF3I	CTNAG	4 cut(s)	150, 756, 922, 1534
Hsp92II	CATG	6 cut(s)	28, 356, 686, 790, 898, 1205
HspAI	GCGC	1 cut(s)	1575
Kzo9I	GATC	3 cut(s)	106, 582, 1123
LguI	GCTCTTC	2 cut(s)	29, 1608
LmnI	GCTCC	4 cut(s)	91, 277, 754, 1400
Lsp1109I	GCAGC	2 cut(s)	1224, 1573
LweI	GCATC	3 cut(s)	144, 236, 1240
MaeI	CTAG	3 cut(s)	62, 1311, 1572
MaeIII	GTNAC	5 cut(s)	440, 486, 917, 1091, 1313
MalI	GATC	3 cut(s)	108, 584, 1125
MboI	GATC	3 cut(s)	106, 582, 1123
MfeI	CAATTG	1 cut(s)	1404
MflI	RGATCY	1 cut(s)	1123
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	8 cut(s)	807, 912, 1062, 1274, 1279, 1329, 1404, 1558
MlyI	GAGTC	1 cut(s)	1513
MmeI	TCCRAC	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	820
MseI	TTAA	5 cut(s)	15, 282, 501, 929, 1431
MslI	CAYNNNNRTG	2 cut(s)	23, 570
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	1 cut(s)	1404
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	751, 1583, 1624
NcoI	CCATGG	1 cut(s)	894
NdeII	GATC	3 cut(s)	106, 582, 1123
NlaIII	CATG	6 cut(s)	28, 356, 686, 790, 898, 1205
NlaIV	GGNNCC	4 cut(s)	702, 727, 728, 750
NmuCI	GTSAC	2 cut(s)	486, 1091
PceI	AGGCCT	1 cut(s)	1539
PciSI	GCTCTTC	2 cut(s)	29, 1608
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	96, 129, 385, 609
PflFI	GACNNNGTC	1 cut(s)	1181
PkrI	GCNGC	2 cut(s)	1214, 1588
PleI	GAGTC	1 cut(s)	1513
PpsI	GAGTC	1 cut(s)	1513
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	702, 727, 728, 750
PspOMI	GGGCCC	1 cut(s)	726
PspPI	GGNCC	5 cut(s)	679, 700, 726, 727, 776
PstNI	CAGNNNCTG	1 cut(s)	1095
PsuI	RGATCY	1 cut(s)	1123
PsyI	GACNNNGTC	1 cut(s)	1181
RsaI	GTAC	2 cut(s)	148, 1380
RsaNI	GTAC	2 cut(s)	147, 1379
RseI	CAYNNNNRTG	2 cut(s)	23, 570
SapI	GCTCTTC	2 cut(s)	29, 1608
SaqAI	TTAA	5 cut(s)	15, 282, 501, 929, 1431
SatI	GCNGC	2 cut(s)	1213, 1587
Sau3AI	GATC	3 cut(s)	106, 582, 1123
Sau96I	GGNCC	5 cut(s)	679, 700, 726, 727, 776
SchI	GAGTC	1 cut(s)	1513
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	144, 236, 1240
SfcI	CTRYAG	3 cut(s)	192, 1158, 1320
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	2 cut(s)	23, 570
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	1310
Sse9I	AATT	8 cut(s)	807, 912, 1062, 1274, 1279, 1329, 1404, 1558
SseBI	AGGCCT	1 cut(s)	1539
SsiI	CCGC	2 cut(s)	167, 752
SspI	AATATT	1 cut(s)	1450
SspMI	CTAG	3 cut(s)	62, 1311, 1572
StuI	AGGCCT	1 cut(s)	1539
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	894, 1033
TaaI	ACNGT	2 cut(s)	1091, 1324
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	8 cut(s)	807, 912, 1062, 1274, 1279, 1329, 1404, 1558
TatI	WGTACW	1 cut(s)	1378
TfiI	GAWTC	4 cut(s)	96, 129, 385, 609
Tru1I	TTAA	5 cut(s)	15, 282, 501, 929, 1431
Tru9I	TTAA	5 cut(s)	15, 282, 501, 929, 1431
TscAI	CASTG	5 cut(s)	372, 485, 930, 1096, 1266
TseFI	GTSAC	2 cut(s)	486, 1091
TseI	GCWGC	2 cut(s)	1212, 1586
Tsp45I	GTSAC	2 cut(s)	486, 1091
TspDTI	ATGAA	6 cut(s)	13, 440, 588, 957, 981, 1596
TspGWI	ACGGA	4 cut(s)	276, 459, 789, 1062
TspRI	CASTG	5 cut(s)	372, 485, 930, 1096, 1266
Tth111I	GACNNNGTC	1 cut(s)	1181
VpaK11BI	GGWCC	1 cut(s)	776
XagI	CCTNNNNNAGG	1 cut(s)	1037
XapI	RAATTY	1 cut(s)	1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	3 cut(s)	62, 1311, 1572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.