Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003413.1

Orthogroup ID

OG0011606

Physical Location & Seq

Genomic Coordinates Reverse (-)

42000 .. 43674

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003413.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgacaaatttcgctgcagcacgcgccaacctttttcggcgctacacgacacgcaagtgggcatcacgtagtcgctctcgaacgtcagcttctccaccgaagcccatgacgtcacccacgttgccttccttccgagctggcagccggccaagcttgggcaagaaaaatgtcatgggcttgcccatttttttgacttggccagggaaagccaaaccttgcccagctatatttggtccggtgtatgctcctttttctccatgcccggtcaacacgtcactaatcccatgtggtgcccggagtggaaatgaaggaacttttgaagaagagctagaaaaggaagaaagtaactggaaatcaaatcaagaagatatagaagatctcatcgaaagagatggggaggaaaacttgtctgtagatcttgctttggatgatttgctcagttcagatagctcagatgacgagtgcagtgatgcggagttctcctctgttgaaggaaatctagatagagatccgttggaggatgaggatttcagtttagaaggttttatggaaggacaaacaactagtaacaccctagcagcaattcaagaagatgaaggaaaggtggaagatgggaatacttttttccctctagaggggacaaacaaggatggagcagttgcatctggaaaaaatggagaagttaatccagcaacgaaagaagttcaatctttaaccaagcaacctaagagaaaagagggaacaaactcaaccaacgagagatcacatcagactcaaaagaatgtcacaggcctacaaaaaatagccgaggcccgactcacttcagctgaggtccggctcacttcacctcagccgaggtccggctcccttcacctcagccgaggttcggctcacttcacctcagctgaggctcggctcacttcaggctcacttcagccgaggtccgactcgcttcacctcagccgaggtccggctcacatgacagagacactgatagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.16

Weight (kDa)

5.14

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011606)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G281000_v2.0.a1
pyrus_communis	pycom11g16490
rosa_multiflora	Rmu_sc0001581.1_g000018 Rmu_sc0003413.1_g000009 Rmu_sc0004660.1_g000002 Rmu_sc0005999.1_g000003 Rmu_sc0007553.1_g000007 Rmu_ssc0000386.1_g000046
rosa_roxburghii	Rroxscaffold_4G00308860 Rroxscaffold_4G00308870 Rroxscaffold_4G00326360 Rroxscaffold_5G00332780 Rroxscaffold_5G00332790 Rroxscaffold_6G00399230
rosa_rugosa	Rorug05G0540600
rosa_samantha	Rh3BG286100 Rh6AG109500
rosa_wichuraiana	Rw2G021740 Rw6G011820 Rw7G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	2 cut(s)	146, 197
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	3 cut(s)	807, 906, 917
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	6 cut(s)	155, 634, 635, 860, 886, 970
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	320, 491, 587, 707
AhlI	ACTAGT	1 cut(s)	563
AjiI	CACGTC	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	55
AluBI	AGCT	8 cut(s)	89, 137, 153, 224, 328, 450, 827, 905
AluI	AGCT	8 cut(s)	89, 137, 153, 224, 328, 450, 827, 905
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	4 cut(s)	146, 197, 790, 810
ApeKI	GCWGC	4 cut(s)	14, 17, 141, 578
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	26, 42
AspS9I	GGNCC	6 cut(s)	233, 811, 832, 858, 942, 968
AsuC2I	CCSGG	2 cut(s)	263, 295
AsuHPI	GGTGA	5 cut(s)	105, 837, 863, 889, 947
AvaII	GGWCC	5 cut(s)	233, 832, 858, 942, 968
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	290
BbvCI	CCTCAGC	6 cut(s)	828, 849, 875, 901, 906, 959
BbvI	GCAGC	3 cut(s)	29, 153, 590
BccI	CCATC	3 cut(s)	386, 605, 644
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	263, 295
BcoDI	GTCTC	1 cut(s)	980
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	5 cut(s)	329, 500, 564, 575, 632
BfmI	CTRYAG	2 cut(s)	15, 411
BfoI	RGCGCY	1 cut(s)	43
BglII	AGATCT	2 cut(s)	376, 415
BisI	GCNGC	4 cut(s)	15, 18, 142, 579
BlsI	GCNGC	4 cut(s)	16, 19, 143, 580
Bme1390I	CCNGG	3 cut(s)	201, 263, 295
Bme18I	GGWCC	5 cut(s)	233, 832, 858, 942, 968
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	6 cut(s)	233, 811, 832, 858, 942, 968
BmiI	GGNNCC	2 cut(s)	292, 865
BmrFI	CCNGG	3 cut(s)	201, 263, 295
BmsI	GCATC	3 cut(s)	71, 460, 671
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu10I	CCTNAGC	6 cut(s)	828, 849, 875, 901, 906, 959
BpuMI	CCSGG	2 cut(s)	263, 295
BsaAI	YACGTR	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	6 cut(s)	200, 807, 854, 880, 938, 964
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	6 cut(s)	155, 634, 635, 860, 886, 970
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	6 cut(s)	200, 807, 854, 880, 938, 964
BseGI	GGATG	3 cut(s)	433, 526, 655
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	6 cut(s)	155, 634, 635, 860, 886, 970
BseMII	CTCAG	8 cut(s)	451, 465, 819, 863, 889, 897, 915, 973
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	29, 153, 590
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	148, 199, 792, 812
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	7 cut(s)	145, 236, 263, 295, 835, 861, 971
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	6 cut(s)	155, 634, 635, 860, 886, 970
BsmAI	GTCTC	1 cut(s)	980
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	4 cut(s)	148, 199, 792, 812
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	376, 415, 508, 761
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	4 cut(s)	148, 199, 792, 812
BspCNI	CTCAG	8 cut(s)	450, 464, 820, 862, 888, 898, 914, 972
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	292, 865
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	6 cut(s)	200, 807, 854, 880, 938, 964
BssMI	GATC	4 cut(s)	376, 415, 508, 761
BssNI	GRCGYC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	4 cut(s)	22, 139, 146, 179
BstDEI	CTNAG	9 cut(s)	437, 451, 726, 828, 849, 875, 901, 906, 959
BstF5I	GGATG	3 cut(s)	433, 526, 655
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	26, 42
BstKTI	GATC	4 cut(s)	379, 418, 511, 764
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	4 cut(s)	376, 415, 508, 761
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 150
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	3 cut(s)	199, 261, 293
BstSFI	CTRYAG	2 cut(s)	15, 411
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	29, 153, 590
BstX2I	RGATCY	3 cut(s)	376, 415, 508
BstYI	RGATCY	3 cut(s)	376, 415, 508
BsuRI	GGCC	4 cut(s)	148, 199, 792, 812
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	433, 526, 655
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	472, 989
Cac8I	GCNNGC	4 cut(s)	22, 139, 146, 179
CfoI	GCGC	2 cut(s)	26, 42
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	6 cut(s)	233, 811, 832, 858, 942, 968
CviAII	CATG	6 cut(s)	106, 172, 258, 285, 979, 999
DdeI	CTNAG	9 cut(s)	437, 451, 726, 828, 849, 875, 901, 906, 959
DpnI	GATC	4 cut(s)	378, 417, 510, 763
DpnII	GATC	4 cut(s)	376, 415, 508, 761
EaeI	YGGCCR	2 cut(s)	146, 197
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	792
Eco47I	GGWCC	5 cut(s)	233, 832, 858, 942, 968
Eco57I	CTGAAG	3 cut(s)	807, 906, 917
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	6 cut(s)	109, 175, 261, 288, 982, 1002
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	6 cut(s)	105, 171, 257, 284, 978, 998
Fnu4HI	GCNGC	4 cut(s)	15, 18, 142, 579
FokI	GGATG	3 cut(s)	440, 533, 662
Fsp4HI	GCNGC	4 cut(s)	15, 18, 142, 579
FspBI	CTAG	5 cut(s)	329, 500, 564, 575, 632
GlaI	GCGC	2 cut(s)	25, 41
GluI	GCNGC	4 cut(s)	15, 18, 142, 579
GsaI	CCCAGC	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	4 cut(s)	148, 199, 792, 812
HapII	CCGG	7 cut(s)	145, 236, 263, 295, 835, 861, 971
HhaI	GCGC	2 cut(s)	26, 42
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	109, 175, 261, 288, 982, 1002
Hin6I	GCGC	2 cut(s)	24, 40
HinP1I	GCGC	2 cut(s)	24, 40
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	3 cut(s)	772, 816, 947
HpaII	CCGG	7 cut(s)	145, 236, 263, 295, 835, 861, 971
HphI	GGTGA	5 cut(s)	105, 837, 863, 889, 947
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	5 cut(s)	134, 445, 454, 771, 946
Hpy188III	TCNNGA	6 cut(s)	78, 362, 500, 587, 632, 666
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	8 cut(s)	135, 139, 302, 485, 533, 545, 590, 878
HpyCH4IV	ACGT	5 cut(s)	67, 83, 110, 119, 272
HpyCH4V	TGCA	3 cut(s)	17, 465, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 150
HpyF3I	CTNAG	9 cut(s)	437, 451, 726, 828, 849, 875, 901, 906, 959
HpySE526I	ACGT	5 cut(s)	67, 83, 110, 119, 272
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	6 cut(s)	109, 175, 261, 288, 982, 1002
HspAI	GCGC	2 cut(s)	24, 40
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	376, 415, 508, 761
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	3 cut(s)	250, 653, 869
Lsp1109I	GCAGC	3 cut(s)	29, 153, 590
LweI	GCATC	3 cut(s)	71, 460, 671
MaeI	CTAG	5 cut(s)	329, 500, 564, 575, 632
MaeII	ACGT	5 cut(s)	67, 83, 110, 119, 272
MaeIII	GTNAC	5 cut(s)	111, 273, 344, 566, 784
MalI	GATC	4 cut(s)	378, 417, 510, 763
MboI	GATC	4 cut(s)	376, 415, 508, 761
MboII	GAAGA	7 cut(s)	332, 335, 350, 377, 386, 602, 620
MflI	RGATCY	3 cut(s)	376, 415, 508
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	2 cut(s)	7, 582
MluNI	TGGCCA	1 cut(s)	199
MlyI	GAGTC	3 cut(s)	766, 810, 941
MmeI	TCCRAC	2 cut(s)	495, 969
Mox20I	TGGCCA	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	2 cut(s)	684, 713
MslI	CAYNNNNRTG	1 cut(s)	55
Msp20I	TGGCCA	1 cut(s)	199
MspA1I	CMGCKG	2 cut(s)	827, 905
MspI	CCGG	7 cut(s)	145, 236, 263, 295, 835, 861, 971
MspR9I	CCNGG	3 cut(s)	201, 263, 295
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	23, 150
NaeI	GCCGGC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	263, 295
NdeII	GATC	4 cut(s)	376, 415, 508, 761
NgoMIV	GCCGGC	1 cut(s)	144
NlaIII	CATG	6 cut(s)	109, 175, 261, 288, 982, 1002
NlaIV	GGNNCC	2 cut(s)	292, 865
NmeAIII	GCCGAG	6 cut(s)	832, 879, 892, 905, 963, 989
NmuCI	GTSAC	3 cut(s)	111, 273, 784
OliI	CACNNNNGTG	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	16, 19, 143, 580
PleI	GAGTC	3 cut(s)	766, 810, 941
PpsI	GAGTC	3 cut(s)	766, 810, 941
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	292, 865
PspPI	GGNCC	6 cut(s)	233, 811, 832, 858, 942, 968
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	3 cut(s)	376, 415, 508
PvuII	CAGCTG	2 cut(s)	827, 905
RseI	CAYNNNNRTG	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	684, 713
SatI	GCNGC	4 cut(s)	15, 18, 142, 579
Sau3AI	GATC	4 cut(s)	376, 415, 508, 761
Sau96I	GGNCC	6 cut(s)	233, 811, 832, 858, 942, 968
SchI	GAGTC	3 cut(s)	766, 810, 941
ScrFI	CCNGG	3 cut(s)	201, 263, 295
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	71, 460, 671
SfcI	CTRYAG	2 cut(s)	15, 411
SinI	GGWCC	5 cut(s)	233, 832, 858, 942, 968
SmiMI	CAYNNNNRTG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	2 cut(s)	7, 582
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	5 cut(s)	329, 500, 564, 575, 632
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	199, 261, 293
TaiI	ACGT	5 cut(s)	70, 86, 113, 122, 275
TaqI	TCGA	2 cut(s)	79, 384
TasI	AATT	2 cut(s)	7, 582
Tru1I	TTAA	2 cut(s)	684, 713
Tru9I	TTAA	2 cut(s)	684, 713
TscAI	CASTG	2 cut(s)	472, 996
TseFI	GTSAC	3 cut(s)	111, 273, 784
TseI	GCWGC	4 cut(s)	14, 17, 141, 578
Tsp45I	GTSAC	3 cut(s)	111, 273, 784
TspDTI	ATGAA	2 cut(s)	321, 609
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	472, 996
VpaK11BI	GGWCC	5 cut(s)	233, 832, 858, 942, 968
XapI	RAATTY	1 cut(s)	7
XbaI	TCTAGA	2 cut(s)	499, 631
XspI	CTAG	5 cut(s)	329, 500, 564, 575, 632
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.