Rmu_sc0004660.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004660.1
OG0011606
Physical Location & Seq
Forward (+)
7701 .. 8534
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004660.1_g000002.1.cds

Sequence Viewer

Length: 834 bp
ctggcagataccaaaaaatcttgggcttgtacagtgatttgtcaaaggcaggctgtttttcaatcttggaagaacattgaaagaggcttatcaaagtggctgggtaaagagatagagctttatccttttcaaaacaacagagcttttttcgtctgcgaaaactgtgaggaggcagagcagattgctagtcatggaaaactcccattgctggggcaaccagaggtccttctttttgagtgggcacaaggattgacaaacaatctgaagaaggtggtgagctacggaggatggatagcagtgaagggactcccacttcattggtggtcgcagaaatattttaagcagatcggcgatacttgtggtggcttgcttgaagtggataacaggacagaaggcttcaaacatctgttcgaagctcggatcagagtcagagagaatgagattggattcctgcctgaactagtgaagctgactgaaggtaatcaatctcacattgtacgtatccagtcaattttgccggcaagacaacctgccatggcaagaagaaaggaactacaattccactttcactgtaagaagaagttgaccgaggctgctggggattctatctttgaagatgaagataatcggaatattgctggacagttttgtgtaggcaattttccggcgagctccaggttgccggaagctcactcaccaataactgatatgacacgtggcatgaaggttttaatgagaaacaaaaggtccctgaaggttttaatgagaatacatgggaagctgcaaagatttcttaggagaatgaggagccgtcattggaagtggagagggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

32.17

Weight (kDa)

9.81

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AclWI GGATC 1 cut(s) 428
AcuI CTGAAG 3 cut(s) 284, 495, 773
AcvI CACGTG 1 cut(s) 716
AfaI GTAC 2 cut(s) 31, 498
AfiI CCNNNNNNNGG 2 cut(s) 208, 209
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 6 cut(s) 62, 80, 131, 374, 400, 614
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 674
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 8 cut(s) 118, 143, 279, 416, 469, 672, 689, 781
AluI AGCT 8 cut(s) 118, 143, 279, 416, 469, 672, 689, 781
Alw21I GWGCWC 1 cut(s) 674
AlwI GGATC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 593, 781
AspS9I GGNCC 2 cut(s) 223, 747
AsuHPI GGTGA 2 cut(s) 286, 687
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 2 cut(s) 223, 747
BaeGI GKGCMC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 674
BbrPI CACGTG 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 674
BbvI GCAGC 2 cut(s) 580, 768
BccI CCATC 1 cut(s) 282
BceAI ACGGC 1 cut(s) 795
BciT130I CCWGG 1 cut(s) 676
BciVI GTATCC 1 cut(s) 512
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 2 cut(s) 186, 461
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 2 cut(s) 594, 782
BlsI GCNGC 2 cut(s) 595, 783
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 2 cut(s) 223, 747
BmgT120I GGNCC 2 cut(s) 223, 747
BmiI GGNNCC 2 cut(s) 749, 809
BmrFI CCNGG 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 658
Bpu14I TTCGAA 1 cut(s) 411
BsaAI YACGTR 2 cut(s) 500, 716
BsaJI CCNNGG 2 cut(s) 534, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 209
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 2 cut(s) 534, 588
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 208, 209
BseMI GCAATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 182, 820
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 580, 768
BseYI CCCAGC 3 cut(s) 100, 208, 596
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 3 cut(s) 518, 665, 683
BslFI GGGAC 2 cut(s) 318, 733
BslI CCNNNNNNNGG 2 cut(s) 208, 209
BsmFI GGGAC 2 cut(s) 318, 733
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 244, 674
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 2 cut(s) 345, 420
Bsp19I CCATGG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 749, 809
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 29
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 534, 588
BssMI GATC 2 cut(s) 345, 420
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 4 cut(s) 34, 164, 572, 645
BstAUI TGTACA 1 cut(s) 29
BstBAI YACGTR 2 cut(s) 500, 716
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 4 cut(s) 51, 368, 519, 670
BstDEI CTNAG 1 cut(s) 794
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 2 cut(s) 348, 423
BstMBI GATC 2 cut(s) 345, 420
BstNI CCWGG 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 674
BstSLI GKGCMC 1 cut(s) 244
BstSNI TACGTA 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 580, 768
BstXI CCANNNNNNTGG 1 cut(s) 318
BsuI GTATCC 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 39, 303, 568
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 4 cut(s) 51, 368, 519, 670
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 223, 747
Csp6I GTAC 2 cut(s) 30, 497
CviAII CATG 4 cut(s) 191, 535, 721, 773
CviQI GTAC 2 cut(s) 30, 497
DdeI CTNAG 1 cut(s) 794
DpnI GATC 2 cut(s) 347, 422
DpnII GATC 2 cut(s) 345, 420
Ecl136II GAGCTC 1 cut(s) 672
Eco105I TACGTA 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 223, 747
Eco53kI GAGCTC 1 cut(s) 672
Eco57I CTGAAG 3 cut(s) 284, 495, 773
Eco72I CACGTG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 223, 747
EcoRII CCWGG 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 4 cut(s) 194, 538, 724, 776
FaiI YATR 5 cut(s) 192, 536, 710, 722, 774
FaqI GGGAC 2 cut(s) 318, 733
FatI CATG 4 cut(s) 190, 534, 720, 772
Fnu4HI GCNGC 2 cut(s) 594, 782
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 2 cut(s) 594, 782
FspBI CTAG 2 cut(s) 186, 461
GluI GCNGC 2 cut(s) 594, 782
GsaI CCCAGC 3 cut(s) 104, 212, 600
GsuI CTGGAG 1 cut(s) 658
HapII CCGG 3 cut(s) 518, 665, 683
Hin1II CATG 4 cut(s) 194, 538, 724, 776
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 4 cut(s) 306, 426, 447, 602
HpaII CCGG 3 cut(s) 518, 665, 683
HphI GGTGA 2 cut(s) 286, 687
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 5 cut(s) 264, 420, 425, 431, 630
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 7 cut(s) 236, 262, 295, 386, 470, 718, 748
HpyCH4III ACNGT 4 cut(s) 34, 164, 572, 645
HpyCH4IV ACGT 2 cut(s) 499, 715
HpyCH4V TGCA 1 cut(s) 784
HpyF3I CTNAG 1 cut(s) 794
HpySE526I ACGT 2 cut(s) 499, 715
Hsp92II CATG 4 cut(s) 194, 538, 724, 776
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Kzo9I GATC 2 cut(s) 345, 420
LmnI GCTCC 2 cut(s) 677, 807
Lsp1109I GCAGC 2 cut(s) 580, 768
MaeI CTAG 2 cut(s) 186, 461
MaeII ACGT 2 cut(s) 499, 715
MalI GATC 2 cut(s) 347, 422
MboI GATC 2 cut(s) 345, 420
MboII GAAGA 6 cut(s) 82, 277, 555, 589, 626, 632
MhlI GDGCHC 2 cut(s) 244, 674
MluCI AATT 3 cut(s) 510, 557, 658
MlyI GAGTC 2 cut(s) 300, 435
MnlI CCTC 8 cut(s) 77, 160, 163, 214, 278, 583, 798, 821
MroNI GCCGGC 1 cut(s) 517
MseI TTAA 3 cut(s) 339, 731, 761
MspI CCGG 3 cut(s) 518, 665, 683
MspR9I CCNGG 1 cut(s) 676
MvaI CCWGG 1 cut(s) 676
NaeI GCCGGC 1 cut(s) 519
NcoI CCATGG 1 cut(s) 534
NdeII GATC 2 cut(s) 345, 420
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 4 cut(s) 194, 538, 724, 776
NlaIV GGNNCC 2 cut(s) 749, 809
NspV TTCGAA 1 cut(s) 411
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 2 cut(s) 447, 602
PkrI GCNGC 2 cut(s) 595, 783
PleI GAGTC 2 cut(s) 300, 434
PmaCI CACGTG 1 cut(s) 716
PmlI CACGTG 1 cut(s) 716
PpsI GAGTC 2 cut(s) 300, 434
Ppu21I YACGTR 2 cut(s) 500, 716
PpuMI RGGWCCY 2 cut(s) 223, 747
Psp124BI GAGCTC 1 cut(s) 674
Psp5II RGGWCCY 2 cut(s) 223, 747
Psp6I CCWGG 1 cut(s) 674
PspCI CACGTG 1 cut(s) 716
PspFI CCCAGC 3 cut(s) 100, 208, 596
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 749, 809
PspPI GGNCC 2 cut(s) 223, 747
PspPPI RGGWCCY 2 cut(s) 223, 747
RsaI GTAC 2 cut(s) 31, 498
RsaNI GTAC 2 cut(s) 30, 497
SacI GAGCTC 1 cut(s) 674
SaqAI TTAA 3 cut(s) 339, 731, 761
SatI GCNGC 2 cut(s) 594, 782
Sau3AI GATC 2 cut(s) 345, 420
Sau96I GGNCC 2 cut(s) 223, 747
SchI GAGTC 2 cut(s) 300, 435
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 2 cut(s) 244, 674
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 2 cut(s) 223, 747
SnaBI TACGTA 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 3 cut(s) 510, 557, 658
SspI AATATT 2 cut(s) 335, 634
SspMI CTAG 2 cut(s) 186, 461
SstI GAGCTC 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 674
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 34, 164, 572, 645
TaiI ACGT 2 cut(s) 502, 718
TaqI TCGA 1 cut(s) 411
TaqII GACCGA 1 cut(s) 602
TasI AATT 3 cut(s) 510, 557, 658
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 447, 602
Tru1I TTAA 3 cut(s) 339, 731, 761
Tru9I TTAA 3 cut(s) 339, 731, 761
TscAI CASTG 3 cut(s) 39, 303, 575
TseI GCWGC 2 cut(s) 593, 781
TspDTI ATGAA 3 cut(s) 305, 633, 737
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 3 cut(s) 39, 303, 575
VpaK11BI GGWCC 2 cut(s) 223, 747
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XspI CTAG 2 cut(s) 186, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.