Rorug05G0540600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011606
Physical Location & Seq
Forward (+)
72887743 .. 72889843
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0540600.1

Sequence Viewer

Length: 966 bp
ATGGCAGTCCAGATGAATGAACAAGATCTCTCAGAGCATAGAGCAATGTCAGAGGAAGAGTTTGATTCTTCCTCTATAGTTCGCCTCAACATTGGAGGACAACAATTCTGCACGACTGTTTATACTTTGATTCATCGGGAACCTAATTCTAAGCTTGCTGCAATTATGCACCAAGACCCTGAAATCAAATATGTTTTTTATGATAGGGATGGCCAAATTTTTAGTCACATTCTTAATTGGCTACGGCACGGTGTTCTTCCGGACTTTGAAGTTGTTGATGCCAAAGAACTTCTCAGAGAAGCAGAATACTATCAACTACATGGGCTGAAGGATAATATACCAGATTTTACAAGCAGTTATATTTGTTCATTTGGATCAGCTCCCTATCCAAATAGACGTAAATTTCAAGGTGCTAAACTTTGTGGCCTCAATCTTTCATCTCAAGCAAATTTCACAAGCAGTGATTTTAGGAGTGCATGTCTAAGAAATGTGTCATTCTCACATTCAAATCTTATGAGTTCAAAGTTCGACATAGCAGATGCTGAGGGTGCTGACTTTCGCATTGCAAAATTGGTATTTTGTTCATTTACTGGGGCGAATCTCCGTAGAGCTTTGTTTTCTGGTGCAGAATTGTTGTCTGCAACCTTAAACAATGCTGATCTTAGAAATACCAATTTGGAGGGAGCCAACTTGAGGCGTGCAACCTTGAACAATGCTGATCTTAAAAATGCCAATTTGGAGGGAGCCAACTTGAGTTATGCAACCTTAAACAATGCTGATCTTACAAACGCCAATTTGAAGGGAGCAAACTTGTTTCAAGCTATGTTGAAAGGTGTCAAGTTGAGCAAGACTAATTTGAAGTATGCAGATCTTCGAGGTGCTTATCGCTGGTTATCAGAAGCCGATCTTGAAGAAGCTTACTTGGAGGGTGCAAAGCTTACCAGCTGTTTCCCATTTCTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.96

Weight (kDa)

6.01

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 27 - 109 1.7e-14 BTB/POZ domain
Pentapeptide_4 PF13599 149 - 226 9.5e-08 Pentapeptide repeat region
Pentapeptide PF00805 189 - 228 5.1e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 192 - 261 5.1e-09 Pentapeptide repeat region
Pentapeptide_4 PF13599 215 - 290 4.5e-11 Pentapeptide repeat region
Pentapeptide PF00805 229 - 268 2.6e-12 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 264 - 294 1e-05 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 259
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 3 cut(s) 216, 401, 448
AcuI CTGAAG 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 693
AluBI AGCT 7 cut(s) 154, 380, 611, 821, 917, 937, 945
AluI AGCT 7 cut(s) 154, 380, 611, 821, 917, 937, 945
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 2 cut(s) 211, 424
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 216, 401, 448
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
BalI TGGCCA 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 75
BglII AGATCT 2 cut(s) 25, 868
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 141, 685, 745
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 2 cut(s) 268, 529
BmuI ACTGGG 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 543
BpuEI CTTGAG 3 cut(s) 426, 712, 772
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 693
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 2 cut(s) 51, 561
BseAI TCCGGA 1 cut(s) 259
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 693
BseMI GCAATG 2 cut(s) 51, 561
BseMII CTCAG 3 cut(s) 45, 307, 534
BseNI ACTGG 1 cut(s) 595
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 2 cut(s) 94, 645
BshFI GGCC 2 cut(s) 213, 426
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 693
BsnI GGCC 2 cut(s) 213, 426
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
BspANI GGCC 2 cut(s) 213, 426
BspCNI CTCAG 3 cut(s) 44, 306, 535
BspEI TCCGGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 141, 685, 745
BspPI GGATC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 51, 561
BsrI ACTGG 1 cut(s) 595
BssMI GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
Bst4CI ACNGT 2 cut(s) 118, 251
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 156, 699
BstDEI CTNAG 6 cut(s) 31, 150, 293, 482, 543, 662
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 7 cut(s) 28, 377, 661, 721, 781, 871, 907
BstMBI GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNSI RCATGY 1 cut(s) 480
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 2 cut(s) 25, 868
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 2 cut(s) 25, 868
BsuRI GGCC 2 cut(s) 213, 426
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 156, 699
CaiI CAGNNNCTG 1 cut(s) 542
CviAII CATG 2 cut(s) 320, 477
DdeI CTNAG 6 cut(s) 31, 150, 293, 482, 543, 662
DpnI GATC 7 cut(s) 27, 376, 660, 720, 780, 870, 906
DpnII GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 347
FaeI CATG 2 cut(s) 323, 480
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FatI CATG 2 cut(s) 319, 476
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 213, 426
HapII CCGG 1 cut(s) 260
Hin1II CATG 2 cut(s) 323, 480
HindIII AAGCTT 3 cut(s) 152, 915, 935
HinfI GANTC 3 cut(s) 65, 130, 598
HpaII CCGG 1 cut(s) 260
Hpy188I TCNGA 4 cut(s) 34, 52, 296, 898
Hpy188III TCNNGA 4 cut(s) 10, 137, 260, 908
HpyAV CCTTC 2 cut(s) 322, 793
HpyCH4III ACNGT 2 cut(s) 118, 251
HpyCH4IV ACGT 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 6 cut(s) 31, 150, 293, 482, 543, 662
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 2 cut(s) 323, 480
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
LmnI GCTCC 4 cut(s) 385, 683, 743, 803
LpnPI CCDG 8 cut(s) 23, 192, 273, 354, 576, 606, 874, 955
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 268, 529
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 224
MalI GATC 7 cut(s) 27, 376, 660, 720, 780, 870, 906
MboI GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
MboII GAAGA 5 cut(s) 60, 68, 248, 863, 923
MflI RGATCY 2 cut(s) 25, 868
MlsI TGGCCA 1 cut(s) 213
MluNI TGGCCA 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 213
MroI TCCGGA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 213
MseI TTAA 4 cut(s) 234, 647, 723, 767
MslI CAYNNNNRTG 1 cut(s) 958
Msp20I TGGCCA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 945
MspI CCGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeII GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
NlaIII CATG 2 cut(s) 323, 480
NlaIV GGNNCC 3 cut(s) 141, 685, 745
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 1 cut(s) 480
PfeI GAWTC 3 cut(s) 65, 130, 598
PkrI GCNGC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 141, 685, 745
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 2 cut(s) 25, 868
PvuII CAGCTG 1 cut(s) 945
RseI CAYNNNNRTG 1 cut(s) 958
SaqAI TTAA 4 cut(s) 234, 647, 723, 767
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 7 cut(s) 25, 374, 658, 718, 778, 868, 904
SfaNI GCATC 2 cut(s) 268, 529
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 958
SmlI CTYRAG 3 cut(s) 441, 691, 751
SmoI CTYRAG 3 cut(s) 441, 691, 751
TaaI ACNGT 2 cut(s) 118, 251
TaiI ACGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 528, 874
TfiI GAWTC 3 cut(s) 65, 130, 598
Tru1I TTAA 4 cut(s) 234, 647, 723, 767
Tru9I TTAA 4 cut(s) 234, 647, 723, 767
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 6 cut(s) 29, 33, 122, 357, 426, 573
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 1 cut(s) 466
XapI RAATTY 3 cut(s) 216, 401, 448
XceI RCATGY 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.