Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005999.1

Orthogroup ID

OG0011606

Physical Location & Seq

Genomic Coordinates Forward (+)

22625 .. 23518

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005999.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggctggcgctttagctactggtggagctcaatttttgaaaaaaagcattaatgaggattcaatgagcaaggggcaagttgggccaacatctttattggactcaaacttaaactttaatatactgcatcaattgtttctaggtttcaagaaggctccacttgagcctggaggtttagaggcccaaggggaagttaatgcagtggcctgcaaacagtgttctttttctggaaaaagaggaacacataaaagtcacagtgaagacaggggaaagcaaggaaaacctggagattttaagtcctcaagcgcaacatcctcgttgggattgaaaatttcaactaaacctatagaaaggagaattcttagaagatacagtgaaggcaacttgaggaaaggcaattggtctactgggaaagtttcaagagacttgcttagggtgttgaagcctgaagactttggaggtagaagatacttgcagacagaacaatccttgggagacaacagagtaagttataattcggtgttaagaggaggagacaaagatgaagataaggaggaagatgaagatgaaggtgttgttgaagatgaagttgaacaagaagatgaacaagtaatttttggaaataagcaaggaggaaatgaaggaacttttaaagaagagctagaaaaggaagaaagtaactggaaatcaaatcaagaagatataaaagatctcatcgaaagagatggggaggaaaacttgtctgtagatcttgctttggatgatttgcttagttcagatagctcagatgacgagtgcagtgatgcagagttctcctctgttgaaggaaatctagacagagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.95

Weight (kDa)

4.68

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011606)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G281000_v2.0.a1
pyrus_communis	pycom11g16490
rosa_multiflora	Rmu_sc0001581.1_g000018 Rmu_sc0003413.1_g000009 Rmu_sc0004660.1_g000002 Rmu_sc0005999.1_g000003 Rmu_sc0007553.1_g000007 Rmu_ssc0000386.1_g000046
rosa_roxburghii	Rroxscaffold_4G00308860 Rroxscaffold_4G00308870 Rroxscaffold_4G00326360 Rroxscaffold_5G00332780 Rroxscaffold_5G00332790 Rroxscaffold_6G00399230
rosa_rugosa	Rorug05G0540600
rosa_samantha	Rh3BG286100 Rh6AG109500
rosa_wichuraiana	Rw2G021740 Rw6G011820 Rw7G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	330, 357
AcuI	CTGAAG	1 cut(s)	468
AjnI	CCWGG	2 cut(s)	166, 283
AluBI	AGCT	4 cut(s)	17, 29, 661, 783
AluI	AGCT	4 cut(s)	17, 29, 661, 783
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	3 cut(s)	417, 489, 528
AoxI	GGCC	3 cut(s)	83, 180, 204
ApoI	RAATTY	2 cut(s)	330, 357
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	11, 308
AspS9I	GGNCC	2 cut(s)	83, 181
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	267, 456
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	1 cut(s)	719
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	2 cut(s)	168, 285
BcoDI	GTCTC	3 cut(s)	417, 489, 528
BfaI	CTAG	3 cut(s)	140, 662, 833
BfmI	CTRYAG	2 cut(s)	345, 744
BfoI	RGCGCY	1 cut(s)	12
BglII	AGATCT	2 cut(s)	709, 748
Bme1390I	CCNGG	2 cut(s)	168, 285
BmgT120I	GGNCC	2 cut(s)	83, 181
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	168, 285
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	136, 793
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	2 cut(s)	267, 456
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	2 cut(s)	189, 306
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	3 cut(s)	182, 286, 406
BsaJI	CCNNGG	2 cut(s)	184, 489
Bse1I	ACTGG	3 cut(s)	25, 412, 686
BseBI	CCWGG	2 cut(s)	168, 285
BseDI	CCNNGG	2 cut(s)	184, 489
BseGI	GGATG	2 cut(s)	311, 766
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	3 cut(s)	25, 412, 686
BseRI	GAGGAG	3 cut(s)	543, 546, 805
BsgI	GTGCAG	1 cut(s)	817
BshFI	GGCC	3 cut(s)	85, 182, 206
BsiHKAI	GWGCWC	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	417, 489, 528
BsnI	GGCC	3 cut(s)	85, 182, 206
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	709, 748
BspANI	GGCC	3 cut(s)	85, 182, 206
BspCNI	CTCAG	1 cut(s)	797
BspLI	GGNNCC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	651
BsrI	ACTGG	3 cut(s)	25, 412, 686
BssECI	CCNNGG	2 cut(s)	184, 489
BssMI	GATC	2 cut(s)	709, 748
BssT1I	CCWWGG	2 cut(s)	184, 489
Bst2UI	CCWGG	2 cut(s)	168, 285
Bst4CI	ACNGT	3 cut(s)	216, 257, 374
Bst6I	CTCTTC	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	7, 208
BstDEI	CTNAG	4 cut(s)	362, 431, 770, 784
BstF5I	GGATG	2 cut(s)	311, 766
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 308
BstKTI	GATC	2 cut(s)	712, 751
BstMAI	GTCTC	3 cut(s)	417, 489, 528
BstMBI	GATC	2 cut(s)	709, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	2 cut(s)	168, 285
BstSCI	CCNGG	2 cut(s)	166, 283
BstSFI	CTRYAG	2 cut(s)	345, 744
BstV2I	GAAGAC	2 cut(s)	267, 456
BstX2I	RGATCY	2 cut(s)	709, 748
BstYI	RGATCY	2 cut(s)	709, 748
BsuRI	GGCC	3 cut(s)	85, 182, 206
BtsCI	GGATG	2 cut(s)	311, 766
BtsI	GCAGTG	2 cut(s)	207, 805
BtsIMutI	CAGTG	5 cut(s)	207, 221, 262, 379, 805
Cac8I	GCNNGC	2 cut(s)	7, 208
CfoI	GCGC	2 cut(s)	11, 308
Cfr13I	GGNCC	2 cut(s)	83, 181
DdeI	CTNAG	4 cut(s)	362, 431, 770, 784
DpnI	GATC	2 cut(s)	711, 750
DpnII	GATC	2 cut(s)	709, 748
DraI	TTTAAA	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	184, 489
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	166, 283
EcoT14I	CCWWGG	2 cut(s)	184, 489
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	184, 489
FaiI	YATR	5 cut(s)	122, 246, 347, 513, 704
FblI	GTMKAC	1 cut(s)	404
FokI	GGATG	2 cut(s)	298, 773
FriOI	GRGCYC	1 cut(s)	31
FspBI	CTAG	3 cut(s)	140, 662, 833
GlaI	GCGC	2 cut(s)	10, 307
GsuI	CTGGAG	2 cut(s)	189, 306
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	85, 182, 206
HhaI	GCGC	2 cut(s)	11, 308
Hin6I	GCGC	2 cut(s)	9, 306
HinP1I	GCGC	2 cut(s)	9, 306
HinfI	GANTC	2 cut(s)	59, 101
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	778, 787
Hpy188III	TCNNGA	5 cut(s)	148, 228, 420, 695, 833
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	5 cut(s)	145, 371, 563, 635, 818
HpyCH4III	ACNGT	3 cut(s)	216, 257, 374
HpyCH4V	TGCA	6 cut(s)	127, 200, 210, 475, 798, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	362, 431, 770, 784
HspAI	GCGC	2 cut(s)	9, 306
Kzo9I	GATC	2 cut(s)	709, 748
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	26, 160
LweI	GCATC	2 cut(s)	136, 793
MaeI	CTAG	3 cut(s)	140, 662, 833
MaeIII	GTNAC	2 cut(s)	251, 677
MalI	GATC	2 cut(s)	711, 750
MboI	GATC	2 cut(s)	709, 748
MfeI	CAATTG	2 cut(s)	131, 397
MflI	RGATCY	2 cut(s)	709, 748
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	7 cut(s)	32, 131, 330, 357, 397, 514, 612
MlyI	GAGTC	1 cut(s)	95
MseI	TTAA	7 cut(s)	51, 110, 117, 195, 294, 524, 651
MspR9I	CCNGG	2 cut(s)	168, 285
MunI	CAATTG	2 cut(s)	131, 397
MvaI	CCWGG	2 cut(s)	168, 285
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	709, 748
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	166, 283
PspGI	CCWGG	2 cut(s)	166, 283
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	83, 181
PsuI	RGATCY	2 cut(s)	709, 748
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	7 cut(s)	51, 110, 117, 195, 294, 524, 651
Sau3AI	GATC	2 cut(s)	709, 748
Sau96I	GGNCC	2 cut(s)	83, 181
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	168, 285
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	136, 793
SfcI	CTRYAG	2 cut(s)	345, 744
SmlI	CTYRAG	3 cut(s)	161, 301, 385
SmoI	CTYRAG	3 cut(s)	161, 301, 385
Sse9I	AATT	7 cut(s)	32, 131, 330, 357, 397, 514, 612
SspMI	CTAG	3 cut(s)	140, 662, 833
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	166, 283
StyI	CCWWGG	2 cut(s)	184, 489
TaaI	ACNGT	3 cut(s)	216, 257, 374
TaqI	TCGA	1 cut(s)	717
TasI	AATT	7 cut(s)	32, 131, 330, 357, 397, 514, 612
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	7 cut(s)	51, 110, 117, 195, 294, 524, 651
Tru9I	TTAA	7 cut(s)	51, 110, 117, 195, 294, 524, 651
TscAI	CASTG	5 cut(s)	207, 221, 262, 379, 805
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	558, 576, 582, 600, 618, 654
TspRI	CASTG	5 cut(s)	207, 221, 262, 379, 805
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	330, 357
XbaI	TCTAGA	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	3 cut(s)	140, 662, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.