Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011606

Physical Location & Seq

Genomic Coordinates Reverse (-)

152882 .. 158028

Gene Structure 5147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00332790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGGAAATGGAGTGTGTTGCGAGAGAGGGACAGCTAGGGAGCCGAGCCGAAGCAATTTTTCGGCGAGCTCCGGAGTTGCTGGAAGTTGACTCGCCAATAACCGATATGACACGTGGCAGTCCTCAAAATATAGAGAAACAAAAGGTCCCCGAAGGTTTTAATGAGAATACATGGGAAGCTGCAAAGTTTTCTTGGGAGAATGAGGAGCCGTCATTGGAAGTGGAGAGGGTAGATACAGAGAATAATACTCAACCGAGTATGCCTCGGCGCCTTAATTGCGGTAGAGCTCAATTTTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.61

Weight (kDa)

4.67

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011606)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G281000_v2.0.a1
pyrus_communis	pycom11g16490
rosa_multiflora	Rmu_sc0001581.1_g000018 Rmu_sc0003413.1_g000009 Rmu_sc0004660.1_g000002 Rmu_sc0005999.1_g000003 Rmu_sc0007553.1_g000007 Rmu_ssc0000386.1_g000046
rosa_roxburghii	Rroxscaffold_4G00308860 Rroxscaffold_4G00308870 Rroxscaffold_4G00326360 Rroxscaffold_5G00332780 Rroxscaffold_5G00332790 Rroxscaffold_6G00399230
rosa_rugosa	Rorug05G0540600
rosa_samantha	Rh3BG286100 Rh6AG109500
rosa_wichuraiana	Rw2G021740 Rw6G011820 Rw7G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	4 cut(s)	37, 71, 182, 290
AluI	AGCT	4 cut(s)	37, 71, 182, 290
Alw21I	GWGCWC	2 cut(s)	73, 292
Aor13HI	TCCGGA	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	2 cut(s)	73, 292
BbrPI	CACGTG	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	73, 292
BbvI	GCAGC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	4 cut(s)	44, 150, 210, 272
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	73, 292
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	45, 134
BsmFI	GGGAC	2 cut(s)	45, 134
Bsp1286I	GDGCHC	2 cut(s)	73, 292
Bsp13I	TCCGGA	1 cut(s)	73
BspACI	CCGC	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	4 cut(s)	44, 150, 210, 272
BspT107I	GGYRCC	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	266
BssNI	GRCGYC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	271
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	7 cut(s)	37, 45, 50, 71, 182, 211, 290
CviKI_1	RGCY	7 cut(s)	37, 45, 50, 71, 182, 211, 290
DinI	GGCGCC	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	71, 290
Eco24I	GRGCYC	2 cut(s)	73, 292
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	2 cut(s)	71, 290
Eco72I	CACGTG	1 cut(s)	116
EcoICRI	GAGCTC	2 cut(s)	71, 290
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	73, 292
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
FaeI	CATG	1 cut(s)	177
FaiI	YATR	4 cut(s)	110, 134, 175, 263
FaqI	GGGAC	2 cut(s)	45, 134
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	183
FriOI	GRGCYC	2 cut(s)	73, 292
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	115
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	42, 76, 208
LpnPI	CCDG	2 cut(s)	68, 87
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	73, 292
MluCI	AATT	3 cut(s)	57, 277, 293
Mly113I	GGCGCC	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	22, 135, 199, 222, 276
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	162, 276
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	279
NarI	GGCGCC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	4 cut(s)	44, 150, 210, 272
NmeAIII	GCCGAG	2 cut(s)	71, 247
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	274
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	73, 292
Psp5II	RGGWCCY	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	44, 150, 210, 272
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
SacI	GAGCTC	2 cut(s)	73, 292
SaqAI	TTAA	2 cut(s)	162, 276
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	73, 292
SetI	ASST	7 cut(s)	39, 73, 118, 150, 160, 184, 292
SfoI	GGCGCC	1 cut(s)	272
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	3 cut(s)	57, 277, 293
SsiI	CCGC	1 cut(s)	282
SspDI	GGCGCC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	2 cut(s)	73, 292
TaiI	ACGT	1 cut(s)	118
TasI	AATT	3 cut(s)	57, 277, 293
Tru1I	TTAA	2 cut(s)	162, 276
Tru9I	TTAA	2 cut(s)	162, 276
TseI	GCWGC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	148
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.