Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014977

Physical Location & Seq

Genomic Coordinates Forward (+)

19575053 .. 19576985

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCATCCTTCTATATTTTCAGATCAGTCAGTAGTAGACCGTGCAATCAATGACATATGTATCCTTCTGCAGTGTAGTCGCCACAATTTGAATGTGGTGTCTGTAGGAAAGGGGTTGGTAATGGGCTGGTTAAGGTTTTCAGAAGCTGGAAACGTATTTGATTGCATAAACAGGCCAAACACAGCCTTCCCTGTCCCTATTCATGTTGAAGAGGTCAAAGATATTGTCAGTGTAGCTCGGTGCATACTTGTTGTGGAGAAAGAATCAGTTTTTCAACGATTGGCAGATGACCAGTTTTGCAACAAAAACCATTGTATCATTATCACAGGACGTGGCTATCCTGATATTCCCACAAGAAGGTTTTTGGGGCTCCTGGTGGATACTTTGCATCTCCCTATCTATTGCTTGGTAGATTGTGATCCATACGGTTTTGACATCCTCTCCATATATCGGTTTGGTTCTATGACTACTTGTACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

5.9

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	2 - 32	1.8e-08	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	82 - 158	1.2e-33	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13140
fragaria_vesca	FvH4_3g29421
malus_domestica	MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica	Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis	pycom11g17370
rosa_chinensis	RchiOBHm_Chr5g0053851
rosa_multiflora	Rmu_sc0001759.1_g000008
rosa_roxburghii	Rroxscaffold_1G00026750
rosa_samantha	Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana	Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	413
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	357, 450
AgsI	TTSAA	3 cut(s)	91, 209, 275
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	146, 236
AluI	AGCT	2 cut(s)	146, 236
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
BaeI	ACNNNNGTAYC	4 cut(s)	43, 76, 298, 331
BanII	GRGCYC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	374
BciVI	GTATCC	2 cut(s)	71, 373
BfmI	CTRYAG	2 cut(s)	68, 102
BfuI	GTATCC	2 cut(s)	71, 373
Bme1390I	CCNGG	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	13, 397
BsaBI	GATNNNNATC	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 450
Bse1I	ACTGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	4, 435
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	357, 450
BseNI	ACTGG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	357, 450
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	22, 418
BspANI	GGCC	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	22, 418
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	41, 428
Bst6I	CTCTTC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	4, 435
BstKTI	GATC	2 cut(s)	25, 421
BstMBI	GATC	2 cut(s)	22, 418
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	68, 102
BsuI	GTATCC	2 cut(s)	71, 373
BsuRI	GGCC	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	4, 435
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 235
CaiI	CAGNNNCTG	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	7 cut(s)	126, 146, 175, 185, 236, 336, 370
CviKI_1	RGCY	7 cut(s)	126, 146, 175, 185, 236, 336, 370
CviQI	GTAC	1 cut(s)	474
DpnI	GATC	2 cut(s)	24, 420
DpnII	GATC	2 cut(s)	22, 418
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	22, 142
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	18, 74, 196, 351
HpyCH4III	ACNGT	2 cut(s)	41, 428
HpyCH4IV	ACGT	2 cut(s)	153, 331
HpyCH4V	TGCA	7 cut(s)	4, 44, 70, 165, 243, 300, 388
HpySE526I	ACGT	2 cut(s)	153, 331
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	22, 418
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	9 cut(s)	112, 132, 157, 204, 305, 312, 354, 359, 386
LweI	GCATC	2 cut(s)	13, 397
MaeII	ACGT	2 cut(s)	153, 331
MalI	GATC	2 cut(s)	24, 420
MboI	GATC	2 cut(s)	22, 418
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	2 cut(s)	205, 449
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	2 cut(s)	22, 418
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	22, 418
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	7 cut(s)	137, 148, 156, 216, 238, 334, 362
SfaNI	GCATC	2 cut(s)	13, 397
SfcI	CTRYAG	2 cut(s)	68, 102
Sse9I	AATT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	41, 428
TaiI	ACGT	2 cut(s)	156, 334
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	2 cut(s)	77, 235
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	77, 235
XmiI	GTMKAC	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.