Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006669

Physical Location & Seq

Genomic Coordinates Reverse (-)

22033742 .. 22036099

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTTCCCATTGTTTACGAATACTGGATGGGGTGAGAACTCTAATATTGGGTTTCTTGAGAAGCACATGGGTGCTTCCTTTGATCGAGCGTCCTCAACCTTGGGTAACAAATATTAGCATTGATGATATTCACTCTGGAGATTTCCTAGCAATATCTAAGATTCGTGGACGGTGGGGTGGATTTGAGACTCTAGAAAAGTGGGTGAGTGGAGCTTATGCTGGTCATTCTGCTGTTTGTTTAAGGGATTCTGAAGGAAAGCTATGGGTTGGTGAATCAGGACACGAAAATGAGAAGGGGGAAGATATTATTGCTGTGCTTCCATGGGATGAATGGTGGGAATTTGAGCTAAATAAAGATGATTCCAATCCCCATATTGCATTGCTTCCCTTGCATCCTGATATACGTGCTAAGTTCAATGAGACTGCTGCCTGGGAGTATGCAAGGAGCATGGAAGGTCAACCTTATGGTTTTCATAACTTGATATTCAGCTGGATAGATACTATAGAAGACAACTATCCACCCCCTTTGGATGCTCACGTGGTTGCATCTGTTATGACTGTTTGGAATCAAATACAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACACGAGACTTGGAACAAAGAACCTTACTTTTCCGGATATTCTAGTTGAAGTTGAAAAGAGAGGATCATCTTTTGACCAACTGCTGACAATTCCCGAACAGGATGATTGGGAATACAGTGATGGGAAGTCAACATCGTGTGTGGCCTTCATTCTTGAAATGTATAAGGAGGCAGGACTGTTTGGTCCAATTGCAAGCTCTATCCAGGTCACTGAATTTACGATAAAAGATGCTTACATGCTCAAGTTCTTTGAAAATAATTCAAGCCGCCTGCCAAAGTGGTGCAATGATGGTGACACCGTGAAGCTTCCTTTCTGTCAAATTAAAGGGAAGTATCGAATGGAATTACCTTTATACAACACTATGGAAACGTACCCCCATATGAACGAAAGGTGCCCATCACTGCCCCCCAAGTACTCCCGGTCGCAGAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.11

Weight (kDa)

5.01

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27020 AT5G54870 AT5G54870
fragaria_vesca	FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 FvH4_3g22420
malus_domestica	MD03G1205200.v1.1 MD11G1221100.v1.1
prunus_persica	Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210800_v2.0.a1
pyrus_communis	pycom03g15510 pycom11g19510
rosa_chinensis	RchiOBHm_Chr5g0039091
rosa_laevigata	RLG00000033892
rosa_multiflora	Rmu_sc0000533.1_g000029 Rmu_ssc0000410.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042030
rosa_rugosa	Rorug05G0176400
rosa_samantha	Rh5AG262800 Rh5BG267600 Rh5CG300300 Rh5DG274100
rosa_wichuraiana	Rw5G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	1008
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	1 cut(s)	883
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	341, 830
AcuI	CTGAAG	1 cut(s)	273
AcvI	CACGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	989, 1031
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	7 cut(s)	418, 616, 665, 671, 773, 869, 879
AjnI	CCWGG	2 cut(s)	431, 819
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	6 cut(s)	215, 262, 349, 492, 813, 922
AluI	AGCT	6 cut(s)	215, 262, 349, 492, 813, 922
Alw26I	GTCTC	3 cut(s)	182, 416, 616
AlwI	GGATC	1 cut(s)	688
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	2 cut(s)	428, 590
ApoI	RAATTY	2 cut(s)	341, 830
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	1036
AsuHPI	GGTGA	4 cut(s)	46, 217, 284, 920
AvaII	GGWCC	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	1013
BanI	GGYRCC	1 cut(s)	1008
BauI	CACGAG	1 cut(s)	619
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	415, 577
BccI	CCATC	4 cut(s)	23, 731, 899, 1021
BciT130I	CCWGG	2 cut(s)	433, 821
BcnI	CCSGG	1 cut(s)	1036
BcoDI	GTCTC	3 cut(s)	182, 416, 616
BfaI	CTAG	3 cut(s)	149, 194, 659
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	3 cut(s)	429, 591, 883
BlsI	GCNGC	3 cut(s)	430, 592, 884
BmcAI	AGTACT	1 cut(s)	1031
Bme1390I	CCNGG	3 cut(s)	433, 821, 1036
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	1010
BmrFI	CCNGG	3 cut(s)	433, 821, 1036
BmsI	GCATC	4 cut(s)	403, 523, 557, 835
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	79, 842
BpuMI	CCSGG	1 cut(s)	1036
BsaAI	YACGTR	2 cut(s)	407, 541
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	101, 323, 432
BsaWI	WCCGGW	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	2 cut(s)	380, 907
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	2 cut(s)	433, 821
BseDI	CCNNGG	3 cut(s)	101, 323, 432
BseGI	GGATG	5 cut(s)	34, 334, 394, 538, 724
BseJI	GATNNNNATC	1 cut(s)	366
BseMI	GCAATG	2 cut(s)	380, 907
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	1013
BseXI	GCAGC	2 cut(s)	415, 577
Bsh1285I	CGRYCG	1 cut(s)	1040
BshFI	GGCC	1 cut(s)	761
BshNI	GGYRCC	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	1040
BsiSI	CCGG	2 cut(s)	650, 1036
BsmAI	GTCTC	3 cut(s)	182, 416, 616
BsnI	GGCC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	1013
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	84, 680
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	1 cut(s)	883
BspANI	GGCC	1 cut(s)	761
BspEI	TCCGGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	1010
BspPI	GGATC	1 cut(s)	688
BspT107I	GGYRCC	1 cut(s)	1008
BsrDI	GCAATG	2 cut(s)	380, 907
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	101, 323, 432
BssMI	GATC	2 cut(s)	84, 680
BssSI	CACGAG	1 cut(s)	619
BssT1I	CCWWGG	2 cut(s)	101, 323
Bst2BI	CACGAG	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	433, 821
Bst4CI	ACNGT	5 cut(s)	174, 562, 734, 795, 916
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	2 cut(s)	407, 541
BstC8I	GCNNGC	3 cut(s)	582, 811, 887
BstDEI	CTNAG	2 cut(s)	159, 411
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	5 cut(s)	34, 334, 394, 538, 724
BstKTI	GATC	2 cut(s)	87, 683
BstMAI	GTCTC	3 cut(s)	182, 416, 616
BstMBI	GATC	2 cut(s)	84, 680
BstMCI	CGRYCG	1 cut(s)	1040
BstMWI	GCNNNNNNNGC	2 cut(s)	391, 590
BstNI	CCWGG	2 cut(s)	433, 821
BstNSI	RCATGY	2 cut(s)	601, 856
BstSCI	CCNGG	3 cut(s)	431, 819, 1034
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	1013
BstV1I	GCAGC	2 cut(s)	415, 577
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	5 cut(s)	34, 334, 394, 538, 724
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	3 cut(s)	739, 825, 1016
Cac8I	GCNNGC	3 cut(s)	582, 811, 887
Cfr13I	GGNCC	1 cut(s)	800
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	988, 1030
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	5 cut(s)	69, 324, 451, 598, 853
CviQI	GTAC	2 cut(s)	988, 1030
DdeI	CTNAG	2 cut(s)	159, 411
DpnI	GATC	2 cut(s)	86, 682
DpnII	GATC	2 cut(s)	84, 680
DrdI	GACNNNNNNGTC	1 cut(s)	798
DseDI	GACNNNNNNGTC	1 cut(s)	798
Eco130I	CCWWGG	2 cut(s)	101, 323
Eco47I	GGWCC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	273
Eco72I	CACGTG	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	431, 819
EcoT14I	CCWWGG	2 cut(s)	101, 323
ErhI	CCWWGG	2 cut(s)	101, 323
FaeI	CATG	5 cut(s)	72, 327, 454, 601, 856
FatI	CATG	5 cut(s)	68, 323, 450, 597, 852
FauNDI	CATATG	2 cut(s)	586, 996
Fnu4HI	GCNGC	3 cut(s)	429, 591, 883
FokI	GGATG	5 cut(s)	41, 341, 381, 545, 731
Fsp4HI	GCNGC	3 cut(s)	429, 591, 883
FspBI	CTAG	3 cut(s)	149, 194, 659
GluI	GCNGC	3 cut(s)	429, 591, 883
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	2 cut(s)	650, 1036
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	72, 327, 454, 601, 856
HincII	GTYRAC	2 cut(s)	461, 747
HindII	GTYRAC	2 cut(s)	461, 747
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	6 cut(s)	163, 190, 248, 275, 362, 568
HpaII	CCGG	2 cut(s)	650, 1036
HphI	GGTGA	4 cut(s)	46, 217, 284, 920
Hpy166II	GTNNAC	4 cut(s)	17, 170, 461, 747
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	8 cut(s)	58, 138, 194, 279, 398, 650, 710, 770
Hpy8I	GTNNAC	4 cut(s)	17, 170, 461, 747
HpyAV	CCTTC	4 cut(s)	248, 289, 449, 772
HpyCH4III	ACNGT	5 cut(s)	174, 562, 734, 795, 916
HpyCH4IV	ACGT	3 cut(s)	406, 540, 986
HpyCH4V	TGCA	7 cut(s)	380, 394, 443, 548, 584, 809, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	391, 590
HpyF3I	CTNAG	2 cut(s)	159, 411
HpySE526I	ACGT	3 cut(s)	406, 540, 986
Hsp92II	CATG	5 cut(s)	72, 327, 454, 601, 856
Kpn2I	TCCGGA	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	84, 680
LmnI	GCTCC	2 cut(s)	212, 447
Lsp1109I	GCAGC	2 cut(s)	415, 577
LweI	GCATC	4 cut(s)	403, 523, 557, 835
MaeI	CTAG	3 cut(s)	149, 194, 659
MaeII	ACGT	3 cut(s)	406, 540, 986
MaeIII	GTNAC	3 cut(s)	106, 823, 908
MalI	GATC	2 cut(s)	86, 682
MboI	GATC	2 cut(s)	84, 680
MboII	GAAGA	2 cut(s)	314, 521
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	1013
MluCI	AATT	8 cut(s)	341, 705, 804, 830, 874, 936, 959, 1045
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	105, 671, 778
MroI	TCCGGA	1 cut(s)	649
MseI	TTAA	2 cut(s)	242, 939
MslI	CAYNNNNRTG	2 cut(s)	71, 288
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	2 cut(s)	650, 1036
MspR9I	CCNGG	3 cut(s)	433, 821, 1036
MunI	CAATTG	1 cut(s)	804
MvaI	CCWGG	2 cut(s)	433, 821
MwoI	GCNNNNNNNGC	2 cut(s)	391, 590
NciI	CCSGG	1 cut(s)	1036
NcoI	CCATGG	1 cut(s)	323
NdeI	CATATG	2 cut(s)	586, 996
NdeII	GATC	2 cut(s)	84, 680
NlaIII	CATG	5 cut(s)	72, 327, 454, 601, 856
NlaIV	GGNNCC	1 cut(s)	1010
NmuCI	GTSAC	2 cut(s)	823, 908
NspI	RCATGY	2 cut(s)	601, 856
OliI	CACNNNNGTG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	597
PfeI	GAWTC	5 cut(s)	163, 248, 275, 362, 568
PkrI	GCNGC	3 cut(s)	430, 592, 884
PleI	GAGTC	1 cut(s)	184
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	2 cut(s)	407, 541
PscI	ACATGT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	431, 819
PspCI	CACGTG	1 cut(s)	541
PspGI	CCWGG	2 cut(s)	431, 819
PspN4I	GGNNCC	1 cut(s)	1010
PspPI	GGNCC	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	492
RsaI	GTAC	2 cut(s)	989, 1031
RsaNI	GTAC	2 cut(s)	988, 1030
RseI	CAYNNNNRTG	2 cut(s)	71, 288
SaqAI	TTAA	2 cut(s)	242, 939
SatI	GCNGC	3 cut(s)	429, 591, 883
Sau3AI	GATC	2 cut(s)	84, 680
Sau96I	GGNCC	1 cut(s)	800
ScaI	AGTACT	1 cut(s)	1031
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	433, 821, 1036
SduI	GDGCHC	1 cut(s)	1013
SfaNI	GCATC	4 cut(s)	403, 523, 557, 835
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	71, 288
SmlI	CTYRAG	2 cut(s)	58, 857
SmoI	CTYRAG	2 cut(s)	58, 857
Sse9I	AATT	8 cut(s)	341, 705, 804, 830, 874, 936, 959, 1045
SsiI	CCGC	1 cut(s)	883
SspI	AATATT	2 cut(s)	48, 115
SspMI	CTAG	3 cut(s)	149, 194, 659
StyD4I	CCNGG	3 cut(s)	431, 819, 1034
StyI	CCWWGG	2 cut(s)	101, 323
TaaI	ACNGT	5 cut(s)	174, 562, 734, 795, 916
TaiI	ACGT	3 cut(s)	409, 543, 989
TaqI	TCGA	2 cut(s)	87, 952
TasI	AATT	8 cut(s)	341, 705, 804, 830, 874, 936, 959, 1045
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	1 cut(s)	885
TfiI	GAWTC	5 cut(s)	163, 248, 275, 362, 568
Tru1I	TTAA	2 cut(s)	242, 939
Tru9I	TTAA	2 cut(s)	242, 939
TscAI	CASTG	3 cut(s)	739, 832, 1023
TseFI	GTSAC	2 cut(s)	823, 908
TseI	GCWGC	2 cut(s)	428, 590
Tsp45I	GTSAC	2 cut(s)	823, 908
TspDTI	ATGAA	5 cut(s)	345, 464, 621, 754, 1013
TspRI	CASTG	3 cut(s)	739, 832, 1023
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	2 cut(s)	341, 830
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	2 cut(s)	601, 856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XspI	CTAG	3 cut(s)	149, 194, 659
ZrmI	AGTACT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.