pycom11g22680

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007406
Physical Location & Seq
Forward (+)
25657488 .. 25659356
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
ATGTTGCAGACCCAACACCTTCTCCTTTCCAATTTCCCCATCTTTCTCTCTCATCCCCAAACCCACTTTCTCTCACCTCCCAATCTCTCACCTTTTCCTCTCACTTTTCTCCACAAAACCACCAGTCTCTGCCCTGTATCAGCCCATTCCAGAGCCGGACCCGAACAATGGCTAGCCGAAGCTCCAGAACCCACCACCGCAACTCCATACACTCCCTTAGAGTTTGCTCCAGACGGTCCCGAAGAATTGCCACCGTCTTCTTCTCCAGTGTTTGCCACCAATGATGACCCTTCATCTCTCCAAGTGGCCACCAGTGTTCTTCTCACAGGAGCCATCACTGTCTTCCTCTTTCGCTCGCTGCGACGCCGTGCCAAGCGTGCTAAGGAACTGAAATATAGGTCATCTGGAATGAAGAAGACATTGAAGGATGAGGCTTTGGATAGCCTGAAAGCACTGTCTACAGGTTCTGTTGAAGCAAAAGGTCCACCGTCACCTGTTCAGGCGTTGTTGGGTGGAATATCAGCTGGCGTCATTGCGCTTATTCTTTATAAGTTCACTACTACAATTGAAGCATCTCTCAACCGCCAAACTATTTCTGATAATTTTTCGGTTCGTCAGATTACAATAACCATAAGGACCATTATAAATGGGTTGTGCTACCTTGCAACATTTGTGTTCGGCATCAATGCTGTGGGTTTAGTCCTTTATGCTGGTCAGCTCGCCATCAACTCTATCATGGAAGATATAAATGAAGACACTCAGACTCAAGGTAAGGAGCAGTCAGGCTCACTGAATTCAACGGTTGAAAGCCCCGCAAATAGTGGTGAGAACAGCAATAAGGATAATCAAAGTTCAGATGGAACACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

290

Amino Acids

31.09

Weight (kDa)

5.97

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 163 - 240 1.2e-27 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 549, 644
AccI GTMKAC 1 cut(s) 458
AciI CCGC 3 cut(s) 198, 583, 813
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 793
AcyI GRCGYC 2 cut(s) 364, 528
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 5 cut(s) 424, 473, 569, 798, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 3 cut(s) 182, 524, 718
AluI AGCT 3 cut(s) 182, 524, 718
Alw26I GTCTC 1 cut(s) 131
AlwNI CAGNNNCTG 2 cut(s) 129, 467
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 793
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 4 cut(s) 158, 236, 482, 636
AsuHPI GGTGA 4 cut(s) 66, 81, 483, 836
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 4 cut(s) 158, 236, 482, 636
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 4 cut(s) 249, 334, 422, 759
BbvI GCAGC 1 cut(s) 345
BccI CCATC 4 cut(s) 47, 341, 731, 851
BceAI ACGGC 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme18I GGWCC 4 cut(s) 158, 236, 482, 636
BmgT120I GGNCC 4 cut(s) 158, 236, 482, 636
BmiI GGNNCC 3 cut(s) 160, 238, 331
BmsI GCATC 2 cut(s) 581, 690
BmtI GCTAGC 1 cut(s) 176
BpiI GAAGAC 4 cut(s) 249, 334, 422, 759
BpmI CTGGAG 3 cut(s) 168, 213, 249
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 364, 528
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 3 cut(s) 123, 266, 312
Bse3DI GCAATG 1 cut(s) 531
BseGI GGATG 2 cut(s) 52, 433
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 3 cut(s) 123, 266, 312
BseXI GCAGC 1 cut(s) 345
BshFI GGCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 308
BspACI CCGC 3 cut(s) 198, 583, 813
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 772
BspLI GGNNCC 3 cut(s) 160, 238, 331
BspOI GCTAGC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 3 cut(s) 123, 266, 312
BssNI GRCGYC 2 cut(s) 364, 528
Bst4CI ACNGT 6 cut(s) 236, 255, 340, 456, 489, 802
BstACI GRCGYC 2 cut(s) 364, 528
BstC8I GCNNGC 5 cut(s) 174, 356, 378, 526, 720
BstDEI CTNAG 3 cut(s) 217, 381, 759
BstF5I GGATG 2 cut(s) 52, 433
BstHHI GCGC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 4 cut(s) 249, 334, 422, 759
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 52, 433
BtsIMutI CAGTG 5 cut(s) 273, 319, 336, 452, 788
Cac8I GCNNGC 5 cut(s) 174, 356, 378, 526, 720
CaiI CAGNNNCTG 2 cut(s) 129, 467
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 4 cut(s) 158, 236, 482, 636
CseI GACGC 2 cut(s) 372, 517
CviAII CATG 1 cut(s) 736
DdeI CTNAG 3 cut(s) 217, 381, 759
EaeI YGGCCR 1 cut(s) 306
Eco47I GGWCC 4 cut(s) 158, 236, 482, 636
EcoRI GAATTC 1 cut(s) 793
FaeI CATG 1 cut(s) 739
FaiI YATR 8 cut(s) 208, 396, 549, 632, 644, 708, 737, 746
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 735
FauI CCCGC 1 cut(s) 820
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 2 cut(s) 39, 440
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 3 cut(s) 168, 213, 249
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 372, 517
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 2 cut(s) 364, 528
Hin1II CATG 1 cut(s) 739
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 1 cut(s) 763
HpaII CCGG 1 cut(s) 156
HphI GGTGA 4 cut(s) 66, 81, 483, 836
Hpy166II GTNNAC 3 cut(s) 459, 485, 555
Hpy188I TCNGA 4 cut(s) 598, 618, 762, 856
Hpy188III TCNNGA 5 cut(s) 150, 185, 230, 239, 405
Hpy8I GTNNAC 3 cut(s) 459, 485, 555
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 3 cut(s) 29, 300, 418
HpyCH4III ACNGT 6 cut(s) 236, 255, 340, 456, 489, 802
HpyCH4V TGCA 2 cut(s) 7, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 217, 381, 759
Hsp92I GRCGYC 2 cut(s) 364, 528
Hsp92II CATG 1 cut(s) 739
HspAI GCGC 1 cut(s) 536
LmnI GCTCC 4 cut(s) 187, 232, 329, 775
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 581, 690
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 489
MboII GAAGA 9 cut(s) 249, 252, 254, 311, 334, 424, 427, 752, 764
MfeI CAATTG 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 31, 245, 564, 601, 793
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 757
MnlI CCTC 4 cut(s) 87, 108, 356, 424
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 377
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 739
NlaIV GGNNCC 3 cut(s) 160, 238, 331
NmuCI GTSAC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PsiI TTATAA 2 cut(s) 549, 644
PspN4I GGNNCC 3 cut(s) 160, 238, 331
PspPI GGNCC 4 cut(s) 158, 236, 482, 636
PstNI CAGNNNCTG 2 cut(s) 129, 467
PvuII CAGCTG 1 cut(s) 524
SatI GCNGC 1 cut(s) 359
Sau96I GGNCC 4 cut(s) 158, 236, 482, 636
SchI GAGTC 1 cut(s) 757
SfaNI GCATC 2 cut(s) 581, 690
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 4 cut(s) 158, 236, 482, 636
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 5 cut(s) 31, 245, 564, 601, 793
SsiI CCGC 3 cut(s) 198, 583, 813
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 6 cut(s) 236, 255, 340, 456, 489, 802
TasI AATT 5 cut(s) 31, 245, 564, 601, 793
TscAI CASTG 5 cut(s) 273, 319, 343, 459, 795
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 282, 425, 765
TspRI CASTG 5 cut(s) 273, 319, 343, 459, 795
VpaK11BI GGWCC 4 cut(s) 158, 236, 482, 636
XapI RAATTY 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.