Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Reverse (-)

26231890 .. 26240291

Gene Structure 8402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTGGGAGAGAATTTCTAATTATTTCTATTCACAAAGAGTATTGGACTCGTCTTCGTTCAAGTTTTACGTTTATCTTGGGCCTTCATATTTTTTTTTTCTGGTCAAACAGGGCCTCCATATCAGAGCCCAATATAATATAATACAGTCTACCGTTTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCCATCTATCCGAAATGGGTTTATCTGCTCCGGCCAGGCTGCGAGAGGAGATCCTGTAAGTCGGCCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCAGAGAAATATCCATCATTCAGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGTCCTGATGGAGTGATTATTTTCTCTGACATACTTACGCCTCTACCTGCATTTGGTGTTCCCTTTGACATAGAAGACGTCAAGGGTCCTGTTATTCAGACACCCATTGTTTCTGAAGAGGGATTGAAGACCTTGCATCCGATTGACATGGACAAACTGCACTTTGTGGGGGAATCTTTAAAGATACTGCGGCAGGAGGTTGGTGGGCATGCTGCTGTTTTGGGTTTCGTAGGGGCACCCTGGACGATTGCTACATACATAGTAGAAGGGGGTTCAACTTCCACTTATACAAAAATAAAGAGCATGTGCCATACAGCACCACATATATTGAGGGCTCTTCTTTCTCATTTGACTCAGGCAATATCAGACTACATTGTTTTCCAAGTAGAAGCAGGGGCACATTGCATACAAATATTTGATTCATGGGGTGGGCAACTACCACCAGCCATGTGGGATAGGTGGTCGAAGCCTTATATCCAAGAGATCGTGACTTCAGTTAGGAAAAGATGCCCTAAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCCTTCTTGAGCGTATGAAAGGAACCGGCGTAGACGTGATTGGGCTCGACTGGACGGTAGACATAGCTGATGGTAGAAAACGACTGGGTAGTGAGATCAGTGTACAGGGAAATGTGGATCCTGCTTACCTATTTTCTCCTCTTCCTTCCTTGACCGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGGGGACACATTCTCAATCTAGGGCATGGTGTTCTTGTACGGACACCTGAAGAATCTGTTGAACATTTCTTCGAAGTTGCAAGAAGCTTGAATTATGACACATTTCTTGAACCACAAACGCCGAGGGAATTGGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

428

Amino Acids

47.85

Weight (kDa)

6.84

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	78 - 410	1.5e-115	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	637
AccI	GTMKAC	3 cut(s)	149, 984, 1011
AciI	CCGC	1 cut(s)	592
AclWI	GGATC	3 cut(s)	242, 1064, 1077
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	12, 375, 1113
AcuI	CTGAAG	3 cut(s)	537, 879, 1212
AcyI	GRCGYC	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	2 cut(s)	1056, 1182
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	7 cut(s)	61, 529, 678, 1118, 1205, 1234, 1253
AjiI	CACGTC	1 cut(s)	988
AjnI	CCWGG	2 cut(s)	231, 641
AluBI	AGCT	4 cut(s)	316, 398, 1019, 1230
AluI	AGCT	4 cut(s)	316, 398, 1019, 1230
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	3 cut(s)	242, 1064, 1077
AoxI	GGCC	6 cut(s)	80, 112, 229, 260, 952, 1139
ApeKI	GCWGC	3 cut(s)	236, 385, 614
ApoI	RAATTY	3 cut(s)	12, 375, 1113
AseI	ATTAAT	1 cut(s)	939
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	4 cut(s)	80, 112, 488, 1139
AsuHPI	GGTGA	1 cut(s)	1138
AsuII	TTCGAA	1 cut(s)	1215
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	2 cut(s)	640, 802
BamHI	GGATCC	1 cut(s)	1069
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	3 cut(s)	130, 739, 999
BbsI	GAAGAC	3 cut(s)	45, 483, 536
BbvI	GCAGC	3 cut(s)	223, 397, 601
BccI	CCATC	4 cut(s)	208, 340, 404, 1016
BciT130I	CCWGG	2 cut(s)	233, 643
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	1163
BfmI	CTRYAG	1 cut(s)	1134
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	237, 386, 593, 615
BlsI	GCNGC	4 cut(s)	238, 387, 594, 616
Bme1390I	CCNGG	2 cut(s)	233, 643
Bme18I	GGWCC	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	988
BmgT120I	GGNCC	4 cut(s)	80, 112, 488, 1139
BmiI	GGNNCC	4 cut(s)	489, 639, 976, 1071
BmrFI	CCNGG	2 cut(s)	233, 643
BmrI	ACTGGG	1 cut(s)	1046
BmsI	GCATC	3 cut(s)	267, 547, 899
BmuI	ACTGGG	1 cut(s)	1046
BpiI	GAAGAC	3 cut(s)	45, 483, 536
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	1215
BpuEI	CTTGAG	1 cut(s)	980
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	4 cut(s)	389, 641, 1142, 1265
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	2 cut(s)	1007, 1041
Bse3DI	GCAATG	1 cut(s)	802
BseBI	CCWGG	2 cut(s)	233, 643
BseDI	CCNNGG	4 cut(s)	389, 641, 1142, 1265
BseGI	GGATG	2 cut(s)	279, 538
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	2 cut(s)	1007, 1041
BseRI	GAGGAG	2 cut(s)	258, 1080
BseSI	GKGCMC	2 cut(s)	640, 802
BseXI	GCAGC	3 cut(s)	223, 397, 601
BsgI	GTGCAG	1 cut(s)	545
BshFI	GGCC	6 cut(s)	82, 114, 231, 262, 954, 1141
BshNI	GGYRCC	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	228, 978
BslFI	GGGAC	1 cut(s)	1161
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	1161
BsnI	GGCC	6 cut(s)	82, 114, 231, 262, 954, 1141
Bsp119I	TTCGAA	1 cut(s)	1215
Bsp1286I	GDGCHC	5 cut(s)	130, 640, 739, 802, 999
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	247, 361, 885, 1047, 1069
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	6 cut(s)	82, 114, 231, 262, 954, 1141
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	489, 639, 976, 1071
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	3 cut(s)	242, 1064, 1077
BspQI	GCTCTTC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	1215
BspT107I	GGYRCC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	2 cut(s)	1007, 1041
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	4 cut(s)	389, 641, 1142, 1265
BssMI	GATC	5 cut(s)	247, 361, 885, 1047, 1069
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	389, 1142
Bst2UI	CCWGG	2 cut(s)	233, 643
Bst4CI	ACNGT	3 cut(s)	147, 154, 1009
Bst6I	CTCTTC	3 cut(s)	513, 744, 1098
BstACI	GRCGYC	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	1054
BstBI	TTCGAA	1 cut(s)	1215
BstC8I	GCNNGC	2 cut(s)	318, 612
BstDEI	CTNAG	1 cut(s)	756
BstF5I	GGATG	2 cut(s)	279, 538
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	5 cut(s)	250, 364, 888, 1050, 1072
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	5 cut(s)	247, 361, 885, 1047, 1069
BstNI	CCWGG	2 cut(s)	233, 643
BstNSI	RCATGY	2 cut(s)	614, 709
BstSCI	CCNGG	2 cut(s)	231, 641
BstSFI	CTRYAG	1 cut(s)	1134
BstSLI	GKGCMC	2 cut(s)	640, 802
BstV1I	GCAGC	3 cut(s)	223, 397, 601
BstV2I	GAAGAC	3 cut(s)	45, 483, 536
BstX2I	RGATCY	2 cut(s)	247, 1069
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	2 cut(s)	247, 1069
BsuRI	GGCC	6 cut(s)	82, 114, 231, 262, 954, 1141
BtrI	CACGTC	1 cut(s)	988
BtsCI	GGATG	2 cut(s)	279, 538
BtsIMutI	CAGTG	1 cut(s)	1057
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	318, 612
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	4 cut(s)	80, 112, 488, 1139
Csp6I	GTAC	2 cut(s)	1055, 1181
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	7 cut(s)	270, 550, 611, 706, 825, 850, 1169
CviQI	GTAC	2 cut(s)	1055, 1181
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	5 cut(s)	249, 363, 887, 1049, 1071
DpnII	GATC	5 cut(s)	247, 361, 885, 1047, 1069
DraI	TTTAAA	1 cut(s)	582
DraIII	CACNNNGTG	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	513, 744, 1098
EarI	CTCTTC	3 cut(s)	513, 744, 1098
Eco130I	CCWWGG	2 cut(s)	389, 1142
Eco24I	GRGCYC	3 cut(s)	130, 739, 999
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	3 cut(s)	537, 879, 1212
EcoO109I	RGGNCCY	2 cut(s)	112, 488
EcoRII	CCWGG	2 cut(s)	231, 641
EcoT14I	CCWWGG	2 cut(s)	389, 1142
EcoT38I	GRGCYC	3 cut(s)	130, 739, 999
ErhI	CCWWGG	2 cut(s)	389, 1142
FaeI	CATG	7 cut(s)	273, 553, 614, 709, 828, 853, 1172
FaqI	GGGAC	1 cut(s)	1161
FatI	CATG	7 cut(s)	269, 549, 610, 705, 824, 849, 1168
FblI	GTMKAC	3 cut(s)	149, 984, 1011
Fnu4HI	GCNGC	4 cut(s)	237, 386, 593, 615
FokI	GGATG	2 cut(s)	286, 525
FriOI	GRGCYC	3 cut(s)	130, 739, 999
Fsp4HI	GCNGC	4 cut(s)	237, 386, 593, 615
FspBI	CTAG	1 cut(s)	1163
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	4 cut(s)	237, 386, 593, 615
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	6 cut(s)	82, 114, 231, 262, 954, 1141
HapII	CCGG	2 cut(s)	228, 978
HhaI	GCGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	7 cut(s)	273, 553, 614, 709, 828, 853, 1172
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	3 cut(s)	314, 396, 1228
HinfI	GANTC	5 cut(s)	47, 575, 754, 821, 1196
HpaII	CCGG	2 cut(s)	228, 978
HphI	GGTGA	1 cut(s)	1138
Hpy166II	GTNNAC	5 cut(s)	150, 307, 985, 1012, 1055
Hpy188I	TCNGA	9 cut(s)	125, 209, 341, 352, 430, 501, 517, 543, 769
Hpy188III	TCNNGA	4 cut(s)	407, 889, 959, 1250
Hpy8I	GTNNAC	5 cut(s)	150, 307, 985, 1012, 1055
HpyAV	CCTTC	5 cut(s)	93, 285, 662, 965, 1107
HpyCH4III	ACNGT	3 cut(s)	147, 154, 1009
HpyCH4IV	ACGT	3 cut(s)	69, 480, 987
HpyCH4V	TGCA	8 cut(s)	320, 385, 452, 538, 562, 807, 1136, 1223
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	3 cut(s)	69, 480, 987
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	7 cut(s)	273, 553, 614, 709, 828, 853, 1172
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	247, 361, 885, 1047, 1069
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	3 cut(s)	223, 397, 601
LweI	GCATC	3 cut(s)	267, 547, 899
MaeI	CTAG	1 cut(s)	1163
MaeII	ACGT	3 cut(s)	69, 480, 987
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	5 cut(s)	249, 363, 887, 1049, 1071
MboI	GATC	5 cut(s)	247, 361, 885, 1047, 1069
MboII	GAAGA	9 cut(s)	45, 488, 530, 541, 731, 1085, 1121, 1204, 1205
MflI	RGATCY	2 cut(s)	247, 1069
MhlI	GDGCHC	5 cut(s)	130, 640, 739, 802, 999
MluCI	AATT	6 cut(s)	12, 19, 375, 1113, 1234, 1271
MlyI	GAGTC	2 cut(s)	41, 748
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	2 cut(s)	581, 939
MspI	CCGG	2 cut(s)	228, 978
MspR9I	CCNGG	2 cut(s)	233, 643
MvaI	CCWGG	2 cut(s)	233, 643
NdeII	GATC	5 cut(s)	247, 361, 885, 1047, 1069
NlaIII	CATG	7 cut(s)	273, 553, 614, 709, 828, 853, 1172
NlaIV	GGNNCC	4 cut(s)	489, 639, 976, 1071
NmuCI	GTSAC	1 cut(s)	889
NspI	RCATGY	2 cut(s)	614, 709
NspV	TTCGAA	1 cut(s)	1215
PaeI	GCATGC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	3 cut(s)	575, 821, 1196
PkrI	GCNGC	4 cut(s)	238, 387, 594, 616
PleI	GAGTC	2 cut(s)	41, 748
PpsI	GAGTC	2 cut(s)	41, 748
PpuMI	RGGWCCY	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	939
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	231, 641
PspGI	CCWGG	2 cut(s)	231, 641
PspN4I	GGNNCC	4 cut(s)	489, 639, 976, 1071
PspPI	GGNCC	4 cut(s)	80, 112, 488, 1139
PspPPI	RGGWCCY	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	1138
PsuI	RGATCY	2 cut(s)	247, 1069
RsaI	GTAC	2 cut(s)	1056, 1182
RsaNI	GTAC	2 cut(s)	1055, 1181
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	581, 939
SatI	GCNGC	4 cut(s)	237, 386, 593, 615
Sau3AI	GATC	5 cut(s)	247, 361, 885, 1047, 1069
Sau96I	GGNCC	4 cut(s)	80, 112, 488, 1139
SchI	GAGTC	2 cut(s)	41, 748
ScrFI	CCNGG	2 cut(s)	233, 643
SduI	GDGCHC	5 cut(s)	130, 640, 739, 802, 999
SfaNI	GCATC	3 cut(s)	267, 547, 899
SfcI	CTRYAG	1 cut(s)	1134
SfuI	TTCGAA	1 cut(s)	1215
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	6 cut(s)	12, 19, 375, 1113, 1234, 1271
SsiI	CCGC	1 cut(s)	592
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	1 cut(s)	1163
StyD4I	CCNGG	2 cut(s)	231, 641
StyI	CCWWGG	2 cut(s)	389, 1142
TaaI	ACNGT	3 cut(s)	147, 154, 1009
TaiI	ACGT	3 cut(s)	72, 483, 990
TaqI	TCGA	3 cut(s)	866, 999, 1215
TaqII	GACCGA	1 cut(s)	1121
TasI	AATT	6 cut(s)	12, 19, 375, 1113, 1234, 1271
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	3 cut(s)	575, 821, 1196
Tru1I	TTAA	2 cut(s)	581, 939
Tru9I	TTAA	2 cut(s)	581, 939
TscAI	CASTG	1 cut(s)	1057
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	3 cut(s)	236, 385, 614
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	3 cut(s)	75, 813, 983
TspGWI	ACGGA	2 cut(s)	392, 1198
TspRI	CASTG	1 cut(s)	1057
VpaK11BI	GGWCC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	3 cut(s)	12, 375, 1113
XceI	RCATGY	2 cut(s)	614, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XmiI	GTMKAC	3 cut(s)	149, 984, 1011
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	1 cut(s)	1163
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.