Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006125

Physical Location & Seq

Genomic Coordinates Reverse (-)

26272365 .. 26275680

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTCTGCGGAAAGCCTTTCGCTCCCGGAAATTCTCCAAATCGTTCCGGGAATTGAAGCTCAGCGACGAGGATCAGGCGAGTGGGGGCGGCCGCAGAATCGTCCGCGACTCCGACTGTGCTGACTCATCTTCGTCGCCGTCGTCGTCTTCGTGGTCGGATATGCTCCCGGAGCTGCTCGGCGAGATCATACGGAGAGTGGAGGCCAGCGAGGACAAGTGGCCGCACCGCAAAAACGTCGTCGCTTGTGCCTGTGTCTGCAAGCGGTGGAGGGATATCACCAAGGAGATCGCGCGGTCTCCTTCGTACAGTGGCAAAATTACCTTCCCTTCGTGCCTTAAACAGCCAGGACCACGCGATTTTCCCCACCAATGTCTAATAAAACGAAACAAGAAGACCTCAACGTTTTACCTTTATCTTGCACTTACCCCATCATTCACCGATAAGGGAAAGTTTCTTTTAGCAGCGCGGAGATACAGGCATGGCACTAACACTGAGTATATAATATCACTTGATGCTGATGACATATCCCAAGGAAGTAATGCTTATGTGGGAAAATTAAGCTCCGATTTTCTGGGCACCAATTTTACAATCTATGACAGTCAGCCACCGCATAGTGGTGCAAAGCCTGCTAGCAGTAGGTCTACTCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCGGCAGGCAACTTTGAAGTTGGGCAGGTCTCTTACAAGTTCAACCTTCTAAAATCAAGAGGTCCAAGGAGGATGATTTGTCCGCTTATTTGCCCACCATCAGATGAAACTTCCATTGGAAAACCTTTGGACAATTTAAAGTTGAAGAAAACAGCTTCTACAAGTTCTGGTTACACCTTTTTGAGGAACAAAGCTCCAAGATGGCATGATCAGTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACAGTGGCATCAGTAAAGAACTTTCAACTGGTTGCAGCTGTGGACCCAAGCCAACCAGGAGGGAAAGGAGACGAAGAAACGGCTCTCCAGTTCGGGAAAGTGGGTGATGATACATTTACCATGGATTATAGACAGCCTTTGTCAGCGTTCCAGGCGTTTGCTATTTGCCTTACCAGCTTTGGCACCAAACTGGCGTGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

379

Amino Acids

42.12

Weight (kDa)

9.56

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	113 - 373	1.3e-95	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53320
fragaria_vesca	FvH4_3g18240 FvH4_3g18250
malus_domestica	MD03G1243700.v1.1 MD11G1264100.v1.1
prunus_persica	Prupe.4G164400_v2.0.a1
pyrus_communis	pycom03g19050 pycom11g23260
rosa_chinensis	RchiOBHm_Chr5g0030861 RchiOBHm_Chr5g0030871
rosa_laevigata	RLG00000033258 RLG00000033259
rosa_multiflora	Rmu_sc0001974.1_g000029
rosa_roxburghii	Rroxscaffold_1G00049390 Rroxscaffold_1G00049400
rosa_rugosa	Rorug05G0121000 Rorug05G0121000
rosa_samantha	Rh5AG214000 Rh5AG214100 Rh5BG213200 Rh5BG213300 Rh5CG237000 Rh5CG237100 Rh5DG217600 Rh5DG217700
rosa_wichuraiana	Rw5G019560 Rw5G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	2 cut(s)	578, 1115
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	5 cut(s)	108, 293, 295, 357, 469
AclI	AACGTT	1 cut(s)	404
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	91, 221
AcsI	RAATTY	2 cut(s)	32, 916
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	4 cut(s)	617, 685, 867, 928
AgsI	TTSAA	6 cut(s)	58, 701, 727, 829, 916, 959
AjnI	CCWGG	3 cut(s)	346, 988, 1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AluBI	AGCT	7 cut(s)	61, 175, 564, 839, 878, 971, 1110
AluI	AGCT	7 cut(s)	61, 175, 564, 839, 878, 971, 1110
Alw26I	GTCTC	4 cut(s)	9, 303, 718, 996
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	3 cut(s)	91, 204, 221
ApeKI	GCWGC	3 cut(s)	175, 464, 968
ApoI	RAATTY	2 cut(s)	32, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspLEI	GCGC	2 cut(s)	295, 469
AspS9I	GGNCC	3 cut(s)	350, 746, 976
AsuC2I	CCSGG	3 cut(s)	28, 50, 170
AsuHPI	GGTGA	3 cut(s)	271, 430, 1049
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	3 cut(s)	350, 746, 976
BaeGI	GKGCMC	1 cut(s)	581
BanI	GGYRCC	2 cut(s)	578, 1115
BbsI	GAAGAC	2 cut(s)	141, 401
BbvI	GCAGC	3 cut(s)	162, 476, 980
BccI	CCATC	3 cut(s)	439, 790, 879
BceAI	ACGGC	2 cut(s)	124, 1029
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	3 cut(s)	348, 990, 1085
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	3 cut(s)	28, 50, 170
BcoDI	GTCTC	4 cut(s)	9, 303, 718, 996
BfaI	CTAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	6 cut(s)	91, 94, 176, 224, 465, 969
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	6 cut(s)	92, 95, 177, 225, 466, 970
Bme1390I	CCNGG	6 cut(s)	28, 50, 170, 348, 990, 1085
Bme18I	GGWCC	3 cut(s)	350, 746, 976
BmgT120I	GGNCC	3 cut(s)	350, 746, 976
BmiI	GGNNCC	3 cut(s)	580, 978, 1117
BmrFI	CCNGG	6 cut(s)	28, 50, 170, 348, 990, 1085
BmsI	GCATC	2 cut(s)	505, 950
BmtI	GCTAGC	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	141, 401
BpmI	CTGGAG	1 cut(s)	1004
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuMI	CCSGG	3 cut(s)	28, 50, 170
BsaI	GGTCTC	2 cut(s)	303, 718
BsaJI	CCNNGG	5 cut(s)	282, 532, 749, 922, 1053
Bsc4I	CCNNNNNNNGG	4 cut(s)	617, 685, 867, 928
Bse1I	ACTGG	3 cut(s)	966, 1021, 1128
BseBI	CCWGG	3 cut(s)	348, 990, 1085
BseDI	CCNNGG	5 cut(s)	282, 532, 749, 922, 1053
BseGI	GGATG	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	617, 685, 867, 928
BseMII	CTCAG	2 cut(s)	76, 486
BseNI	ACTGG	3 cut(s)	966, 1021, 1128
BseSI	GKGCMC	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	162, 476, 980
Bsh1236I	CGCG	5 cut(s)	108, 293, 295, 357, 469
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	93, 206, 223
BshNI	GGYRCC	2 cut(s)	578, 1115
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	4 cut(s)	28, 49, 170, 686
BslI	CCNNNNNNNGG	4 cut(s)	617, 685, 867, 928
BsmAI	GTCTC	4 cut(s)	9, 303, 718, 996
BsmBI	CGTCTC	1 cut(s)	996
BsnI	GGCC	3 cut(s)	93, 206, 223
Bso31I	GGTCTC	2 cut(s)	303, 718
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	4 cut(s)	73, 186, 288, 892
Bsp1720I	GCTNAGC	1 cut(s)	62
Bsp19I	CCATGG	2 cut(s)	922, 1053
BspANI	GGCC	3 cut(s)	93, 206, 223
BspCNI	CTCAG	2 cut(s)	75, 487
BspFNI	CGCG	5 cut(s)	108, 293, 295, 357, 469
BspLI	GGNNCC	3 cut(s)	580, 978, 1117
BspMI	ACCTGC	1 cut(s)	700
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	2 cut(s)	578, 1115
BspTNI	GGTCTC	2 cut(s)	303, 718
BsrI	ACTGG	3 cut(s)	966, 1021, 1128
BssECI	CCNNGG	5 cut(s)	282, 532, 749, 922, 1053
BssMI	GATC	4 cut(s)	73, 186, 288, 892
BssT1I	CCWWGG	5 cut(s)	282, 532, 749, 922, 1053
Bst2UI	CCWGG	3 cut(s)	348, 990, 1085
Bst4CI	ACNGT	4 cut(s)	119, 311, 602, 937
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstC8I	GCNNGC	7 cut(s)	208, 263, 630, 634, 661, 665, 691
BstDEI	CTNAG	2 cut(s)	62, 495
BstDSI	CCRYGG	2 cut(s)	922, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	865
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	5 cut(s)	108, 293, 295, 357, 469
BstHHI	GCGC	2 cut(s)	295, 469
BstKTI	GATC	4 cut(s)	76, 189, 291, 895
BstMAI	GTCTC	4 cut(s)	9, 303, 718, 996
BstMBI	GATC	4 cut(s)	73, 186, 288, 892
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 629, 1085, 1107
BstNI	CCWGG	3 cut(s)	348, 990, 1085
BstSCI	CCNGG	6 cut(s)	26, 48, 168, 346, 988, 1083
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	5 cut(s)	108, 293, 295, 357, 469
BstV1I	GCAGC	3 cut(s)	162, 476, 980
BstV2I	GAAGAC	2 cut(s)	141, 401
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	93, 206, 223
BtgI	CCRYGG	2 cut(s)	922, 1053
BtsCI	GGATG	1 cut(s)	762
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	4 cut(s)	316, 492, 908, 942
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	7 cut(s)	208, 263, 630, 634, 661, 665, 691
CciNI	GCGGCCGC	1 cut(s)	91
CfoI	GCGC	2 cut(s)	295, 469
Cfr13I	GGNCC	3 cut(s)	350, 746, 976
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	4 cut(s)	482, 890, 923, 1054
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	62, 495
DpnI	GATC	4 cut(s)	75, 188, 290, 894
DpnII	GATC	4 cut(s)	73, 186, 288, 892
DraI	TTTAAA	1 cut(s)	822
EaeI	YGGCCR	2 cut(s)	91, 221
EagI	CGGCCG	1 cut(s)	91
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	5 cut(s)	282, 532, 749, 922, 1053
Eco31I	GGTCTC	2 cut(s)	303, 718
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	350, 746, 976
Eco52I	CGGCCG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	865
EcoRII	CCWGG	3 cut(s)	346, 988, 1083
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	5 cut(s)	282, 532, 749, 922, 1053
ErhI	CCWWGG	5 cut(s)	282, 532, 749, 922, 1053
Esp3I	CGTCTC	1 cut(s)	996
FaeI	CATG	4 cut(s)	485, 893, 926, 1057
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	4 cut(s)	481, 889, 922, 1053
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	6 cut(s)	91, 94, 176, 224, 465, 969
FokI	GGATG	1 cut(s)	769
Fsp4HI	GCNGC	6 cut(s)	91, 94, 176, 224, 465, 969
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	2 cut(s)	294, 468
GluI	GCNGC	6 cut(s)	91, 94, 176, 224, 465, 969
GsuI	CTGGAG	1 cut(s)	1004
HaeIII	GGCC	3 cut(s)	93, 206, 223
HapII	CCGG	4 cut(s)	28, 49, 170, 686
HhaI	GCGC	2 cut(s)	295, 469
Hin1II	CATG	4 cut(s)	485, 893, 926, 1057
Hin6I	GCGC	2 cut(s)	293, 467
HinP1I	GCGC	2 cut(s)	293, 467
HinfI	GANTC	3 cut(s)	99, 110, 125
HpaII	CCGG	4 cut(s)	28, 49, 170, 686
HphI	GGTGA	3 cut(s)	271, 430, 1049
Hpy166II	GTNNAC	2 cut(s)	645, 976
Hpy188I	TCNGA	4 cut(s)	115, 160, 568, 787
Hpy188III	TCNNGA	2 cut(s)	741, 1027
Hpy8I	GTNNAC	2 cut(s)	645, 976
Hpy99I	CGWCG	7 cut(s)	71, 139, 145, 148, 242, 245, 654
HpyAV	CCTTC	4 cut(s)	312, 334, 339, 740
HpyCH4III	ACNGT	4 cut(s)	119, 311, 602, 937
HpyCH4IV	ACGT	2 cut(s)	237, 404
HpyCH4V	TGCA	6 cut(s)	261, 422, 623, 659, 901, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 629, 1085, 1107
HpyF3I	CTNAG	2 cut(s)	62, 495
HpySE526I	ACGT	2 cut(s)	237, 404
Hsp92II	CATG	4 cut(s)	485, 893, 926, 1057
HspAI	GCGC	2 cut(s)	293, 467
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	4 cut(s)	73, 186, 288, 892
LmnI	GCTCC	5 cut(s)	29, 171, 172, 569, 883
Lsp1109I	GCAGC	3 cut(s)	162, 476, 980
LweI	GCATC	2 cut(s)	505, 950
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	237, 404
MaeIII	GTNAC	2 cut(s)	854, 931
MalI	GATC	4 cut(s)	75, 188, 290, 894
MboI	GATC	4 cut(s)	73, 186, 288, 892
MboII	GAAGA	5 cut(s)	123, 141, 406, 841, 1019
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	7 cut(s)	32, 53, 318, 557, 583, 817, 916
MlyI	GAGTC	2 cut(s)	104, 119
MmeI	TCCRAC	2 cut(s)	138, 138
MnlI	CCTC	9 cut(s)	64, 196, 205, 264, 409, 737, 747, 861, 986
MseI	TTAA	3 cut(s)	339, 560, 821
MslI	CAYNNNNRTG	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	4 cut(s)	28, 49, 170, 686
MspR9I	CCNGG	6 cut(s)	28, 50, 170, 348, 990, 1085
MvaI	CCWGG	3 cut(s)	348, 990, 1085
MvnI	CGCG	5 cut(s)	108, 293, 295, 357, 469
MwoI	GCNNNNNNNGC	4 cut(s)	172, 629, 1085, 1107
NciI	CCSGG	3 cut(s)	28, 50, 170
NcoI	CCATGG	2 cut(s)	922, 1053
NdeII	GATC	4 cut(s)	73, 186, 288, 892
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	4 cut(s)	485, 893, 926, 1057
NlaIV	GGNNCC	3 cut(s)	580, 978, 1117
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	931
NotI	GCGGCCGC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	3 cut(s)	140, 143, 149
PfeI	GAWTC	1 cut(s)	99
PfoI	TCCNGGA	3 cut(s)	26, 48, 168
PkrI	GCNGC	6 cut(s)	92, 95, 177, 225, 466, 970
PleI	GAGTC	2 cut(s)	104, 119
PpsI	GAGTC	2 cut(s)	104, 119
Psp1406I	AACGTT	1 cut(s)	404
Psp6I	CCWGG	3 cut(s)	346, 988, 1083
PspGI	CCWGG	3 cut(s)	346, 988, 1083
PspN4I	GGNNCC	3 cut(s)	580, 978, 1117
PspPI	GGNCC	3 cut(s)	350, 746, 976
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	339, 560, 821
SatI	GCNGC	6 cut(s)	91, 94, 176, 224, 465, 969
Sau3AI	GATC	4 cut(s)	73, 186, 288, 892
Sau96I	GGNCC	3 cut(s)	350, 746, 976
SchI	GAGTC	2 cut(s)	104, 119
ScrFI	CCNGG	6 cut(s)	28, 50, 170, 348, 990, 1085
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	2 cut(s)	505, 950
SinI	GGWCC	3 cut(s)	350, 746, 976
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	7 cut(s)	32, 53, 318, 557, 583, 817, 916
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	6 cut(s)	26, 48, 168, 346, 988, 1083
StyI	CCWWGG	5 cut(s)	282, 532, 749, 922, 1053
TaaI	ACNGT	4 cut(s)	119, 311, 602, 937
TaiI	ACGT	2 cut(s)	240, 407
TasI	AATT	7 cut(s)	32, 53, 318, 557, 583, 817, 916
TauI	GCSGC	3 cut(s)	93, 96, 226
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	3 cut(s)	339, 560, 821
Tru9I	TTAA	3 cut(s)	339, 560, 821
TscAI	CASTG	4 cut(s)	316, 499, 908, 942
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	3 cut(s)	175, 464, 968
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	1 cut(s)	804
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	4 cut(s)	316, 499, 908, 942
VpaK11BI	GGWCC	3 cut(s)	350, 746, 976
XagI	CCTNNNNNAGG	1 cut(s)	865
XapI	RAATTY	2 cut(s)	32, 916
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.