Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Forward (+)

26941608 .. 26942965

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCTGGAAGAAATCGTGGACCACCTCATGCTGGATTGCCCCCTCCGGTTCATGAATCTCCATATGGAAGAGGACTTGGGCCGATACCCCATCCAGCATTAGTTGAGGAAATGCGAGAATCTCAGCTTGGCATGGGTCCCAGACAACGTCCTCCCCACCCTGCAATAATAGAGGAGCATCTTGCGGCTCAACATCAAGATATACAAGGACTTCTAGGTGATAACCAAAGGCTGGCTGCAACCCATGTCGCACTTAAGCAGGAATTGGAGGCTGCCCAATTTGAGTTGCAGCGAATGGCTTACCATGTTGATTCACTGCGGGCAGACAAGGATGTTCAAATGAGAGATTTGTATGACAAGTCTGTTCGTTTGGAAGTGGACCTTCGTGGAGTTGAGGCCATGCGGAATGAACTTCTTCAGGTTCGTACTGATATCAAGGAGCTCACTGCTGCGAGGCAGGACCTCTCGGCTCAGGCACAAGCGATGACACAAGATTTGGCTAGAATGACTGCTGATTTGCAACAAGCACCAGCTTTGAGAGCAGAAATTGAAGCAATGAAACAGGAATTGCAACGTGCTAGAGCTGCCATTGAGTATGAAAAGAAAGGATATGCAGAGAATTATGAGCATGGTCAGATCATGGAGAAGAATTTGACATCGATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATTGCTAATACTGAGAAGAGAGCACGAGCTGCAGCTGCTGTTGGAAATCCAGGTTATAATGCAAATTATGGCAATCTTGAAGCAGGATATGCAGGAAATCCCTATCCTGCCAACTATGGCATGAATCCTGTACATAGTGGTGCTGAAAATTTTCCTCAGTATGCTCCTATGCCCGGTTCGTCAGGTGCTTATGACATGCAGCGAGCTCAGGGACACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

33.71

Weight (kDa)

6.14

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	3 cut(s)	185, 319, 403
AcsI	RAATTY	2 cut(s)	649, 841
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	427, 825
AfiI	CCNNNNNNNGG	3 cut(s)	32, 232, 866
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	338, 551, 773
AjnI	CCWGG	1 cut(s)	742
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	8 cut(s)	127, 442, 533, 584, 673, 722, 728, 899
AluI	AGCT	8 cut(s)	127, 442, 533, 584, 673, 722, 728, 899
Alw21I	GWGCWC	3 cut(s)	444, 718, 901
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	2 cut(s)	80, 396
ApeKI	GCWGC	9 cut(s)	236, 272, 289, 449, 584, 722, 725, 728, 892
ApoI	RAATTY	2 cut(s)	649, 841
ArsI	GACNNNNNNTTYG	4 cut(s)	478, 499, 510, 531
Asp700I	GAANNNNTTC	2 cut(s)	414, 843
AspS9I	GGNCC	5 cut(s)	20, 80, 137, 379, 460
AsuC2I	CCSGG	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	4 cut(s)	20, 137, 379, 460
BanII	GRGCYC	2 cut(s)	444, 901
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	444, 718, 901
BbvI	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 904
BccI	CCATC	2 cut(s)	99, 655
BciT130I	CCWGG	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	867
BfaI	CTAG	4 cut(s)	215, 501, 579, 666
BfmI	CTRYAG	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	744, 867
Bme18I	GGWCC	4 cut(s)	20, 137, 379, 460
BmgT120I	GGNCC	5 cut(s)	20, 80, 137, 379, 460
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	2 cut(s)	744, 867
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	2 cut(s)	471, 900
BpuMI	CCSGG	1 cut(s)	867
Bsa29I	ATCGAT	1 cut(s)	659
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 232, 866
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	1 cut(s)	659
BseGI	GGATG	2 cut(s)	91, 337
BseLI	CCNNNNNNNGG	3 cut(s)	32, 232, 866
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	5 cut(s)	137, 485, 696, 863, 914
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 904
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	82, 398
BshVI	ATCGAT	1 cut(s)	659
BsiHKAI	GWGCWC	3 cut(s)	444, 718, 901
BsiSI	CCGG	2 cut(s)	47, 867
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	32, 232, 866
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	82, 398
Bsp1286I	GDGCHC	3 cut(s)	444, 718, 901
Bsp1407I	TGTACA	1 cut(s)	823
Bsp143I	GATC	1 cut(s)	636
BspACI	CCGC	3 cut(s)	185, 319, 403
BspANI	GGCC	2 cut(s)	82, 398
BspCNI	CTCAG	5 cut(s)	136, 484, 697, 862, 913
BspDI	ATCGAT	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	138, 139
BspMAI	CTGCAG	1 cut(s)	727
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	823
BssMI	GATC	1 cut(s)	636
BssSI	CACGAG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	744
Bst6I	CTCTTC	2 cut(s)	64, 704
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	3 cut(s)	695, 722, 782
BstAUI	TGTACA	1 cut(s)	823
BstC8I	GCNNGC	3 cut(s)	234, 321, 897
BstDEI	CTNAG	5 cut(s)	123, 471, 705, 849, 900
BstF5I	GGATG	2 cut(s)	91, 337
BstKTI	GATC	1 cut(s)	639
BstMBI	GATC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 782
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	2 cut(s)	742, 865
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 904
Bsu15I	ATCGAT	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	82, 398
BsuTUI	ATCGAT	1 cut(s)	659
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	91, 337
BtsI	GCAGTG	2 cut(s)	314, 444
BtsIMutI	CAGTG	2 cut(s)	314, 444
Cac8I	GCNNGC	3 cut(s)	234, 321, 897
CaiI	CAGNNNCTG	1 cut(s)	731
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	5 cut(s)	20, 80, 137, 379, 460
ClaI	ATCGAT	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	426, 824
CviQI	GTAC	2 cut(s)	426, 824
DdeI	CTNAG	5 cut(s)	123, 471, 705, 849, 900
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	64, 704
EarI	CTCTTC	2 cut(s)	64, 704
Ecl136II	GAGCTC	2 cut(s)	442, 899
Eco24I	GRGCYC	2 cut(s)	444, 901
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	4 cut(s)	20, 137, 379, 460
Eco53kI	GAGCTC	2 cut(s)	442, 899
Eco57I	CTGAAG	1 cut(s)	401
EcoICRI	GAGCTC	2 cut(s)	442, 899
EcoO109I	RGGNCCY	2 cut(s)	137, 460
EcoRII	CCWGG	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	444, 901
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	123
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	64
FokI	GGATG	2 cut(s)	78, 344
FriOI	GRGCYC	2 cut(s)	444, 901
FspBI	CTAG	4 cut(s)	215, 501, 579, 666
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	82, 398
HapII	CCGG	2 cut(s)	47, 867
HinfI	GANTC	4 cut(s)	56, 119, 311, 817
HpaII	CCGG	2 cut(s)	47, 867
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	20, 379
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	4 cut(s)	6, 53, 197, 770
Hpy8I	GTNNAC	2 cut(s)	20, 379
HpyAV	CCTTC	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	148, 574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 782
HpyF3I	CTNAG	5 cut(s)	123, 471, 705, 849, 900
HpySE526I	ACGT	2 cut(s)	148, 574
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	636
LmnI	GCTCC	4 cut(s)	175, 439, 670, 862
Lsp1109I	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 904
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	4 cut(s)	215, 501, 579, 666
MaeII	ACGT	2 cut(s)	148, 574
MalI	GATC	1 cut(s)	638
MboI	GATC	1 cut(s)	636
MboII	GAAGA	5 cut(s)	21, 81, 407, 658, 721
MhlI	GDGCHC	3 cut(s)	444, 718, 901
MluCI	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 757, 841
MmeI	TCCRAC	1 cut(s)	715
MroXI	GAANNNNTTC	2 cut(s)	414, 843
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	47, 867
MspR9I	CCNGG	2 cut(s)	744, 867
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 782
NciI	CCSGG	1 cut(s)	867
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	1 cut(s)	636
NlaIV	GGNNCC	2 cut(s)	138, 139
NmeAIII	GCCGAG	1 cut(s)	446
NspI	RCATGY	1 cut(s)	892
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	414, 843
PfeI	GAWTC	4 cut(s)	56, 119, 311, 817
PflFI	GACNNNGTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	232
PpuMI	RGGWCCY	2 cut(s)	137, 460
PsiI	TTATAA	1 cut(s)	750
Psp124BI	GAGCTC	2 cut(s)	444, 901
Psp5II	RGGWCCY	2 cut(s)	137, 460
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	138, 139
PspPI	GGNCC	5 cut(s)	20, 80, 137, 379, 460
PspPPI	RGGWCCY	2 cut(s)	137, 460
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	731
PsyI	GACNNNGTC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	427, 825
RsaNI	GTAC	2 cut(s)	426, 824
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	2 cut(s)	444, 901
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	5 cut(s)	20, 80, 137, 379, 460
ScrFI	CCNGG	2 cut(s)	744, 867
SduI	GDGCHC	3 cut(s)	444, 718, 901
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	4 cut(s)	20, 137, 379, 460
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 757, 841
SsiI	CCGC	3 cut(s)	185, 319, 403
SspMI	CTAG	4 cut(s)	215, 501, 579, 666
SstI	GAGCTC	2 cut(s)	444, 901
StyD4I	CCNGG	2 cut(s)	742, 865
TaiI	ACGT	2 cut(s)	151, 577
TaqI	TCGA	1 cut(s)	659
TasI	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 757, 841
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	56, 119, 311, 817
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	321, 451
TseI	GCWGC	9 cut(s)	236, 272, 289, 449, 584, 722, 725, 728, 892
TspDTI	ATGAA	6 cut(s)	41, 69, 423, 572, 612, 830
TspRI	CASTG	2 cut(s)	321, 451
Tth111I	GACNNNGTC	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	4 cut(s)	20, 137, 379, 460
XapI	RAATTY	2 cut(s)	649, 841
XceI	RCATGY	1 cut(s)	892
XmnI	GAANNNNTTC	2 cut(s)	414, 843
XspI	CTAG	4 cut(s)	215, 501, 579, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.