Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Reverse (-)

27140000 .. 27142244

Gene Structure 2245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATTTGTTCCATATCTACAGTTTGAATGGAAAACAGGTCTTCCAAAAACCAAAAATTGAAGGCATGTTTGAAGCTCAAGCAATTTGCAGTCCCAAATGGCTCCAATTTCCCACTCCCACCGGGAACAGCATTCCCAAACCCAGAATTGGATTCCCGACTGGAATTTCAAACCCAAATGTTCTCATTTGCCAAACCCCCATTCACTTCCCCCCTCACAAGAACATCAAATCTCAGACCCCTTTTGCAGTAAATGCTTCCTCAGCTTCAGAATACATAGAGGAACCTGCTACCAAAGAGAAATTTCAAACATCTTTGAGTTTACCAGGTTGTTCGAGTTCATTGACGTTGCTTGGAACTGGATACAGGGAAAAGGTCTTTGCAATTATTGGCGTAAAAGTCTATGCTGCAGGACTATATGTGAACCAGTCCGTCTTAAATAGTTTGCATGTTTGGAAAGGAAGATCAACTGCTGAGATTCAAGAGGATTCATCCTTGTTCAACTCTATTTTTCTATCTCCTTTGGAGAAATCGTTACAGATTGTTCTGGTTAGAGATGTTGAGGGGAAAACTTTTTGGGACGCCTTGAATGATGCCATCTCTCCAAGAATCAAATCACCAACCCCTGTTGATGAATCTGCACTGTCCACATTCCGTAGCATCTTTCAAGGGCAACCTCTTAAGAAAGGAACTTTCATATTTTTGACTTGGCCAGACCCTTCCAAAATGCTTGTCTCTATCTCGTCTGATGGGCTTCCTTCTAGTGTGGGTGCTGAAATTAAGTCAGAAAACGTGGCTTTTGCTCTTTTTGATGTATTCTTTGGAGATACTCCAGTTTCTTTCTCCTTGAAAGCTTCGGTTGTGAAAGGACTGGAATCAGTCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

297

Amino Acids

32.38

Weight (kDa)

8.85

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	101 - 292	8.7e-19	Chalcone-flavanone isomerase
Chalcone_3	PF16036	112 - 286	2e-11	Chalcone isomerase-like
Chalcone_2	PF16035	115 - 288	4.7e-12	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	3 cut(s)	4, 165, 302
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	77, 266, 854
AluI	AGCT	3 cut(s)	77, 266, 854
Alw26I	GTCTC	1 cut(s)	739
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	3 cut(s)	4, 165, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BalI	TGGCCA	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	605, 743
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	2 cut(s)	19, 408
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	2 cut(s)	124, 327
BmiI	GGNNCC	2 cut(s)	104, 285
BmrFI	CCNGG	2 cut(s)	124, 327
BmsI	GCATC	2 cut(s)	583, 669
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	63, 869
BpuMI	CCSGG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	5 cut(s)	166, 364, 427, 833, 876
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	3 cut(s)	248, 276, 465
BseNI	ACTGG	5 cut(s)	166, 364, 427, 833, 876
BseXI	GCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	78, 593
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	739
BsmFI	GGGAC	2 cut(s)	78, 593
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	712
Bsp143I	GATC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	3 cut(s)	247, 275, 466
BspLI	GGNNCC	2 cut(s)	104, 285
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	5 cut(s)	166, 364, 427, 833, 876
BssMI	GATC	1 cut(s)	464
BssNI	GRCGYC	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	23, 645
BstACI	GRCGYC	1 cut(s)	582
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	234, 262, 474
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	70, 452
BstSCI	CCNGG	2 cut(s)	122, 325
BstSFI	CTRYAG	2 cut(s)	19, 408
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	295
CseI	GACGC	1 cut(s)	590
CsiI	ACCWGGT	1 cut(s)	325
CviAII	CATG	2 cut(s)	67, 449
CviJI	RGCY	7 cut(s)	77, 103, 266, 712, 754, 797, 854
CviKI_1	RGCY	7 cut(s)	77, 103, 266, 712, 754, 797, 854
DdeI	CTNAG	3 cut(s)	234, 262, 474
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	70, 452
FaiI	YATR	8 cut(s)	15, 68, 278, 405, 418, 420, 450, 698
FaqI	GGGAC	2 cut(s)	78, 593
FatI	CATG	2 cut(s)	66, 448
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	2 cut(s)	70, 452
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	6 cut(s)	153, 478, 488, 609, 635, 875
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	3 cut(s)	323, 424, 648
Hpy188I	TCNGA	4 cut(s)	237, 271, 748, 787
Hpy188III	TCNNGA	2 cut(s)	157, 482
Hpy8I	GTNNAC	3 cut(s)	323, 424, 648
HpyAV	CCTTC	3 cut(s)	56, 729, 768
HpyCH4III	ACNGT	2 cut(s)	23, 645
HpyCH4IV	ACGT	2 cut(s)	347, 792
HpyCH4V	TGCA	6 cut(s)	90, 248, 383, 410, 448, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	3 cut(s)	234, 262, 474
HpySE526I	ACGT	2 cut(s)	347, 792
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	70, 452
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	583, 669
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	347, 792
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	2 cut(s)	34, 474
MlsI	TGGCCA	1 cut(s)	712
MluCI	AATT	9 cut(s)	4, 57, 84, 107, 147, 165, 302, 384, 777
MluNI	TGGCCA	1 cut(s)	712
MnlI	CCTC	6 cut(s)	225, 271, 274, 478, 556, 687
Mox20I	TGGCCA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	3 cut(s)	437, 681, 780
Msp20I	TGGCCA	1 cut(s)	712
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	124, 327
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	70, 452
NlaIV	GGNNCC	2 cut(s)	104, 285
NspI	RCATGY	2 cut(s)	70, 452
PctI	GAATGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	153, 478, 488, 609, 635, 875
PkrI	GCNGC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	104, 285
PstI	CTGCAG	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	437, 681, 780
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	124, 327
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	583, 669
SfcI	CTRYAG	2 cut(s)	19, 408
SmlI	CTYRAG	3 cut(s)	78, 680, 884
SmoI	CTYRAG	3 cut(s)	78, 680, 884
Sse9I	AATT	9 cut(s)	4, 57, 84, 107, 147, 165, 302, 384, 777
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	122, 325
TaaI	ACNGT	2 cut(s)	23, 645
TaiI	ACGT	2 cut(s)	350, 795
TaqI	TCGA	1 cut(s)	335
TasI	AATT	9 cut(s)	4, 57, 84, 107, 147, 165, 302, 384, 777
TfiI	GAWTC	6 cut(s)	153, 478, 488, 609, 635, 875
Tru1I	TTAA	3 cut(s)	437, 681, 780
Tru9I	TTAA	3 cut(s)	437, 681, 780
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	5 cut(s)	17, 330, 480, 648, 685
TspGWI	ACGGA	2 cut(s)	421, 644
TspRI	CASTG	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	680
XapI	RAATTY	3 cut(s)	4, 165, 302
XceI	RCATGY	2 cut(s)	70, 452
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.