pycom11g24150

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010243
Physical Location & Seq
Forward (+)
27149109 .. 27152415
3307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
ATGATGTCAATGACATGCCACACTCTTGATGGGAGAGCTGTGATGGATTTTGTGGCTTGTGGGTGTTCTTCCAATGCTTTGTTGGACCGCTATTCGGTGAGGAATTACTCGAAGGCAAATTCCAAGGGCAGTTGTAGAGGTTATGGAGCTCGGCTGAATCGAATTCGGTGTGGAGTTTCTTCAATGACAACAGCTGAGACTCCAGTACCAAAGAAGGCAGATAGTGCTCTGCTGAATGGTGTGCCTGAAGGTCTTCCACAGGTTTTAAATTTAAAGAAACAATCCAGAAAGCCGGTTTCGCTGACAAATTTGTTTGAAATTGTTGCTGATGACCTCCTCACATTAAATCAAAATCTTCAGTCAATTGTTGGTGCAGAAAACCCCGTCTTAATGTCAGCTGCCGAGCAGATCTTTGGTGCTGGTGGGAAGAGGATGAGACCTGCATTGGTGTTTCTAGTGTCTAGAGCAACAGCAGAACTAGTTGGATTGAAGGAACTTACCAAAGAGCATCGGCGATTGGCAGAGATCATCGAAATGATCCATACAGCAAGCTTGATACATGATGACGTTTTGGATGAAAGTGACATGCGACGAGGGAAGGAAACTGTTCATCAAATGTTCGGTACAAGAGTGGCAGTGCTTGCTGGGGACTTCATGTTTGCACAGTCGTCGTGGTATCTTGCAAATCTAGAAAACATTCAGGTCATCAAGCTCATCAGCCAGGTTATCAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCTAGCTTGTTTGATTGTGACGTCGAACTTGAGGAGTACTTGCTTAAGAGCTACTACAAAACAGCCTCCTTAATCGCTGCAAGTACCAAAGGAGCTGCCATTTTTAGTGGGGTTGACAACTATGTAATGGAGAAAATGTATGACTATGGCAAGAATCTCGGGCTGTCCTTCCAAGTTGTTGATGACATATTGGATTTCACACAGTCGGCGGAGCAGCTGGGGAAGCCTGCTGGAACTGACCTTGCCAAAGGAAACCTGACAGCCCCGGTTATATTTGCTTTGAAGAAAGAACCAAAACTAAGAGACATAATTGAATCAGAATTCAGCGAGACTGGTTCCCTCGACGAAGCCATTTCATTGGTTAAGGCTTGTGGGGGGATTGAACAAGCACAAGAATTAGCGAAAGAGAAAGCTCATCTTGCAATACAAAATCTCGAGTGTCTTCCCAAGACTGCTTTTCGATTAGCGCTGGAGGATATGGTGATGTTCAATCTTCAACGGATTGATTAG

Protein Analysis

424

Amino Acids

46.41

Weight (kDa)

5.7

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 128 - 374 2.8e-77 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca FvH4_3g17330 FvH4_3g17330
malus_domestica MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica Prupe.4G153300_v2.0.a1
pyrus_communis pycom03g20020 pycom11g24150
rosa_chinensis RchiOBHm_Chr5g0028851
rosa_laevigata RLG00000033119
rosa_multiflora Rmu_sc0005178.1_g000010
rosa_roxburghii Rroxscaffold_1G00051040
rosa_rugosa Rorug05G0110700
rosa_samantha Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana Rw5G018380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 448
AciI CCGC 2 cut(s) 88, 971
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 5 cut(s) 118, 162, 268, 307, 1082
AcuI CTGAAG 2 cut(s) 267, 341
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 4 cut(s) 207, 625, 800, 847
AfeI AGCGCT 1 cut(s) 1230
AfiI CCNNNNNNNGG 1 cut(s) 94
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 8 cut(s) 183, 317, 490, 1045, 1076, 1145, 1252, 1259
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 1 cut(s) 720
Alw21I GWGCWC 2 cut(s) 151, 229
Alw26I GTCTC 4 cut(s) 191, 430, 1059, 1085
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 2 cut(s) 920, 1196
Aor51HI AGCGCT 1 cut(s) 1230
ApeKI GCWGC 4 cut(s) 398, 839, 857, 976
ApoI RAATTY 5 cut(s) 118, 162, 268, 307, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 3 cut(s) 252, 606, 696
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 3 cut(s) 109, 758, 1255
AvaI CYCGRG 2 cut(s) 920, 1196
AvaII GGWCC 1 cut(s) 85
BaeI ACNNNNGTAYC 4 cut(s) 189, 222, 615, 648
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 2 cut(s) 245, 1196
Bbv12I GWGCWC 2 cut(s) 151, 229
BbvI GCAGC 4 cut(s) 385, 826, 844, 988
BccI CCATC 2 cut(s) 23, 37
BcgI CGANNNNNNTGC 4 cut(s) 651, 685, 901, 935
BciT130I CCWGG 1 cut(s) 722
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 4 cut(s) 191, 430, 1059, 1085
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 5 cut(s) 455, 462, 479, 689, 765
BfoI RGCGCY 1 cut(s) 1232
BfrI CTTAAG 1 cut(s) 806
BfuAI ACCTGC 1 cut(s) 448
BglII AGATCT 1 cut(s) 408
BisI GCNGC 4 cut(s) 399, 840, 858, 977
BlsI GCNGC 4 cut(s) 400, 841, 859, 978
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 2 cut(s) 722, 1028
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 2 cut(s) 920, 1196
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 1099
BmrFI CCNGG 2 cut(s) 722, 1028
BmsI GCATC 2 cut(s) 517, 770
BpiI GAAGAC 2 cut(s) 245, 1196
BpmI CTGGAG 2 cut(s) 186, 1253
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 123, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 203, 1099
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 2 cut(s) 123, 1026
BseGI GGATG 2 cut(s) 438, 580
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 203, 1099
BseRI GAGGAG 2 cut(s) 326, 809
BseXI GCAGC 4 cut(s) 385, 826, 844, 988
BseYI CCCAGC 2 cut(s) 644, 979
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 151, 229
BsiHKCI CYCGRG 2 cut(s) 920, 1196
BsiSI CCGG 2 cut(s) 293, 1028
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 4 cut(s) 191, 430, 1059, 1085
BsmFI GGGAC 1 cut(s) 662
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 2 cut(s) 920, 1196
Bsp1286I GDGCHC 2 cut(s) 151, 229
Bsp143I GATC 3 cut(s) 408, 525, 537
BspACI CCGC 2 cut(s) 88, 971
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 1099
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 2 cut(s) 203, 1099
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 123, 1026
BssMI GATC 3 cut(s) 408, 525, 537
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 607, 666, 966
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 783
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 2 cut(s) 224, 641
BstC8I GCNNGC 4 cut(s) 550, 642, 759, 990
BstDEI CTNAG 2 cut(s) 195, 1061
BstF5I GGATG 2 cut(s) 438, 580
BstH2I RGCGCY 1 cut(s) 1232
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 3 cut(s) 411, 528, 540
BstMAI GTCTC 4 cut(s) 191, 430, 1059, 1085
BstMBI GATC 3 cut(s) 408, 525, 537
BstMWI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 2 cut(s) 18, 589
BstSCI CCNGG 2 cut(s) 720, 1026
BstV1I GCAGC 4 cut(s) 385, 826, 844, 988
BstV2I GAAGAC 2 cut(s) 245, 1196
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 408
BtsCI GGATG 2 cut(s) 438, 580
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 4 cut(s) 550, 642, 759, 990
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 4 cut(s) 206, 624, 799, 846
CviAII CATG 4 cut(s) 15, 560, 586, 655
CviQI GTAC 4 cut(s) 206, 624, 799, 846
DdeI CTNAG 2 cut(s) 195, 1061
DpnI GATC 3 cut(s) 410, 527, 539
DpnII GATC 3 cut(s) 408, 525, 537
DraI TTTAAA 2 cut(s) 267, 273
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 85
Eco47III AGCGCT 1 cut(s) 1230
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 267, 341
Eco88I CYCGRG 2 cut(s) 920, 1196
EcoICRI GAGCTC 1 cut(s) 149
EcoRI GAATTC 2 cut(s) 162, 1082
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 18, 563, 589, 658
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 14, 559, 585, 654
Fnu4HI GCNGC 4 cut(s) 399, 840, 858, 977
FokI GGATG 2 cut(s) 445, 587
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 399, 840, 858, 977
FspBI CTAG 5 cut(s) 455, 462, 479, 689, 765
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 4 cut(s) 399, 840, 858, 977
GsaI CCCAGC 2 cut(s) 648, 983
GsuI CTGGAG 2 cut(s) 186, 1253
HaeII RGCGCY 1 cut(s) 1232
HapII CCGG 2 cut(s) 293, 1028
HhaI GCGC 1 cut(s) 1231
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 4 cut(s) 18, 563, 589, 658
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 4 cut(s) 157, 199, 916, 1076
HpaII CCGG 2 cut(s) 293, 1028
HphI GGTGA 3 cut(s) 109, 758, 1255
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 1 cut(s) 1081
Hpy188III TCNNGA 5 cut(s) 26, 285, 462, 689, 1196
Hpy8I GTNNAC 1 cut(s) 877
Hpy99I CGWCG 4 cut(s) 594, 673, 788, 1109
HpyAV CCTTC 6 cut(s) 106, 208, 242, 484, 592, 940
HpyCH4III ACNGT 3 cut(s) 607, 666, 966
HpyCH4IV ACGT 2 cut(s) 567, 783
HpyCH4V TGCA 7 cut(s) 374, 443, 662, 683, 740, 842, 1184
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
HpyF3I CTNAG 2 cut(s) 195, 1061
HpySE526I ACGT 2 cut(s) 567, 783
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 4 cut(s) 18, 563, 589, 658
HspAI GCGC 1 cut(s) 1229
Kzo9I GATC 3 cut(s) 408, 525, 537
LmnI GCTCC 3 cut(s) 146, 854, 973
Lsp1109I GCAGC 4 cut(s) 385, 826, 844, 988
LweI GCATC 2 cut(s) 517, 770
MaeI CTAG 5 cut(s) 455, 462, 479, 689, 765
MaeII ACGT 2 cut(s) 567, 783
MaeIII GTNAC 2 cut(s) 581, 779
MalI GATC 3 cut(s) 410, 527, 539
MboI GATC 3 cut(s) 408, 525, 537
MboII GAAGA 8 cut(s) 60, 171, 245, 347, 439, 1057, 1196, 1247
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 151, 229
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 63, 463
MroXI GAANNNNTTC 3 cut(s) 252, 606, 696
MseI TTAA 7 cut(s) 266, 272, 344, 389, 807, 833, 1125
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 3 cut(s) 194, 398, 979
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 2 cut(s) 293, 1028
MspR9I CCNGG 2 cut(s) 722, 1028
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 722
MwoI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
NciI CCSGG 1 cut(s) 1028
NdeII GATC 3 cut(s) 408, 525, 537
NlaIII CATG 4 cut(s) 18, 563, 589, 658
NlaIV GGNNCC 1 cut(s) 1099
NmeAIII GCCGAG 2 cut(s) 130, 427
NmuCI GTSAC 2 cut(s) 581, 779
NspI RCATGY 2 cut(s) 18, 589
PaeR7I CTCGAG 1 cut(s) 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdmI GAANNNNTTC 3 cut(s) 252, 606, 696
PfeI GAWTC 3 cut(s) 157, 916, 1076
PkrI GCNGC 4 cut(s) 400, 841, 859, 978
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 720
PspFI CCCAGC 2 cut(s) 644, 979
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 1099
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 3 cut(s) 194, 398, 979
RsaI GTAC 4 cut(s) 207, 625, 800, 847
RsaNI GTAC 4 cut(s) 206, 624, 799, 846
RseI CAYNNNNRTG 1 cut(s) 533
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 7 cut(s) 266, 272, 344, 389, 807, 833, 1125
SatI GCNGC 4 cut(s) 399, 840, 858, 977
Sau3AI GATC 3 cut(s) 408, 525, 537
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 722, 1028
SduI GDGCHC 2 cut(s) 151, 229
SfaNI GCATC 2 cut(s) 517, 770
Sfr274I CTCGAG 1 cut(s) 1196
SinI GGWCC 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 1196
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 3 cut(s) 791, 806, 1196
SmoI CTYRAG 3 cut(s) 791, 806, 1196
SpeI ACTAGT 1 cut(s) 478
SsiI CCGC 2 cut(s) 88, 971
SspMI CTAG 5 cut(s) 455, 462, 479, 689, 765
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 720, 1026
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 607, 666, 966
TaiI ACGT 2 cut(s) 570, 786
TaqI TCGA 7 cut(s) 110, 160, 531, 786, 1104, 1197, 1222
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 3 cut(s) 157, 916, 1076
Tru1I TTAA 7 cut(s) 266, 272, 344, 389, 807, 833, 1125
Tru9I TTAA 7 cut(s) 266, 272, 344, 389, 807, 833, 1125
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 581, 779
TseI GCWGC 4 cut(s) 398, 839, 857, 976
Tsp45I GTSAC 2 cut(s) 581, 779
TspDTI ATGAA 4 cut(s) 591, 599, 643, 1107
TspRI CASTG 1 cut(s) 642
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 5 cut(s) 118, 162, 268, 307, 1082
XbaI TCTAGA 2 cut(s) 461, 688
XceI RCATGY 2 cut(s) 18, 589
XcmI CCANNNNNNNNNTGG 2 cut(s) 26, 79
XhoI CTCGAG 1 cut(s) 1196
XmnI GAANNNNTTC 3 cut(s) 252, 606, 696
XspI CTAG 5 cut(s) 455, 462, 479, 689, 765
ZraI GACGTC 1 cut(s) 784
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.