Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

27303505 .. 27305337

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGCGAAGACGAACAGAAGAGGGGAGTCTCAAGTGATCCTCATCACCGCTATCCGCTTCCACCCCCCGAGTACGGGACGTTCCAAGGAGTAGCCAACTACCGACCACCGCCTCCCCCGCATCACCCTCCGCCGACCGGGTTCCCTCAGCCTGTGCCGCCGCCGGGAGCCGGTGGCCCTTCAGCGCCTCATCCTGACTACTACACTCATGGATATCAAACCGTTCCTGGTTATGCAGTTGCAGAAGGACGACCAGTAAGAGAGCGTCGCCTTCCTTGCTGTGGTTGTGGACTTGGCTGGTGCCTGTTTATCATTGGTTTCTTCCTAGCTACCGTCCCCTGGTATGTTGGTGCATTCATCTTACTTTGCGCCAGGATAGACCCCCGTGAGAAACCAGGATATATCGCTTGTACACTTGGCGCCATTCTTGCAACAATTGCTATTGTCCTAGGTGCAACAAGGGGAAGTCATGACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.24

Weight (kDa)

7.67

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	300, 419
AciI	CCGC	7 cut(s)	49, 56, 110, 119, 131, 158, 161
AclWI	GGATC	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	2 cut(s)	74, 412
AfiI	CCNNNNNNNGG	7 cut(s)	74, 75, 137, 164, 170, 281, 339
AjnI	CCWGG	4 cut(s)	226, 338, 371, 394
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	175
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	3 cut(s)	187, 371, 422
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	139, 165
AsuHPI	GGTGA	2 cut(s)	38, 116
AvaI	CYCGRG	1 cut(s)	68
AvrII	CCTAGG	1 cut(s)	448
BanI	GGYRCC	2 cut(s)	300, 419
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	147
BciT130I	CCWGG	4 cut(s)	228, 340, 373, 396
BcnI	CCSGG	2 cut(s)	139, 165
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	326, 449
BfoI	RGCGCY	2 cut(s)	188, 423
BisI	GCNGC	2 cut(s)	158, 161
BlnI	CCTAGG	1 cut(s)	448
BlsI	GCNGC	2 cut(s)	159, 162
Bme1390I	CCNGG	6 cut(s)	139, 165, 228, 340, 373, 396
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	4 cut(s)	143, 169, 302, 421
BmrFI	CCNGG	6 cut(s)	139, 165, 228, 340, 373, 396
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	2 cut(s)	139, 165
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	85, 338, 448
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 75, 137, 164, 170, 281, 339
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	254, 479
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	4 cut(s)	228, 340, 373, 396
BseDI	CCNNGG	3 cut(s)	85, 338, 448
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	7 cut(s)	74, 75, 137, 164, 170, 281, 339
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	254, 479
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	2 cut(s)	300, 419
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	138, 164, 171
BslFI	GGGAC	2 cut(s)	91, 320
BslI	CCNNNNNNNGG	7 cut(s)	74, 75, 137, 164, 170, 281, 339
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	91, 320
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	7 cut(s)	49, 56, 110, 119, 131, 158, 161
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	143, 169, 302, 421
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	2 cut(s)	300, 419
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	254, 479
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	85, 338, 448
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	85, 448
Bst2UI	CCWGG	4 cut(s)	228, 340, 373, 396
Bst4CI	ACNGT	2 cut(s)	223, 334
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	2 cut(s)	188, 423
BstHHI	GCGC	3 cut(s)	187, 371, 422
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	37
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 157, 276, 428, 437
BstNI	CCWGG	4 cut(s)	228, 340, 373, 396
BstSCI	CCNGG	6 cut(s)	137, 163, 226, 338, 371, 394
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	190
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	3 cut(s)	187, 371, 422
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	73, 411
CviAII	CATG	2 cut(s)	209, 470
CviJI	RGCY	6 cut(s)	95, 151, 170, 177, 297, 329
CviKI_1	RGCY	6 cut(s)	95, 151, 170, 177, 297, 329
CviQI	GTAC	2 cut(s)	73, 411
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	85, 448
Eco32I	GATATC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	4 cut(s)	226, 338, 371, 394
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	85, 448
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	85, 448
FaeI	CATG	2 cut(s)	212, 473
FaiI	YATR	5 cut(s)	210, 234, 345, 402, 471
FaqI	GGGAC	2 cut(s)	91, 320
FatI	CATG	2 cut(s)	208, 469
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	158, 161
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	158, 161
FspBI	CTAG	2 cut(s)	326, 449
GlaI	GCGC	3 cut(s)	186, 370, 421
GluI	GCNGC	2 cut(s)	158, 161
HaeII	RGCGCY	2 cut(s)	188, 423
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	138, 164, 171
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	3 cut(s)	187, 371, 422
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	212, 473
Hin6I	GCGC	3 cut(s)	185, 369, 420
HinP1I	GCGC	3 cut(s)	185, 369, 420
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	3 cut(s)	138, 164, 171
HphI	GGTGA	2 cut(s)	38, 116
Hpy166II	GTNNAC	2 cut(s)	290, 413
Hpy188III	TCNNGA	2 cut(s)	194, 470
Hpy8I	GTNNAC	2 cut(s)	290, 413
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	189, 239, 281
HpyCH4III	ACNGT	2 cut(s)	223, 334
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	236, 242, 353, 431, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 157, 276, 428, 437
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	212, 473
HspAI	GCGC	3 cut(s)	185, 369, 420
KasI	GGCGCC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	167
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	326, 449
MaeII	ACGT	1 cut(s)	80
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	20, 31, 313
MfeI	CAATTG	1 cut(s)	435
MluCI	AATT	1 cut(s)	435
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	15, 51, 123, 138, 156, 198
MspI	CCGG	3 cut(s)	138, 164, 171
MspR9I	CCNGG	6 cut(s)	139, 165, 228, 340, 373, 396
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	4 cut(s)	228, 340, 373, 396
MwoI	GCNNNNNNNGC	5 cut(s)	118, 157, 276, 428, 437
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	2 cut(s)	139, 165
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	212, 473
NlaIV	GGNNCC	4 cut(s)	143, 169, 302, 421
PagI	TCATGA	1 cut(s)	469
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	159, 162
PleI	GAGTC	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	4 cut(s)	226, 338, 371, 394
PspGI	CCWGG	4 cut(s)	226, 338, 371, 394
PspN4I	GGNNCC	4 cut(s)	143, 169, 302, 421
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	65, 97
RsaI	GTAC	2 cut(s)	74, 412
RsaNI	GTAC	2 cut(s)	73, 411
SatI	GCNGC	2 cut(s)	158, 161
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	6 cut(s)	139, 165, 228, 340, 373, 396
SetI	ASST	3 cut(s)	83, 331, 454
SfaNI	GCATC	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	7 cut(s)	49, 56, 110, 119, 131, 158, 161
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	326, 449
StyD4I	CCNGG	6 cut(s)	137, 163, 226, 338, 371, 394
StyI	CCWWGG	2 cut(s)	85, 448
TaaI	ACNGT	2 cut(s)	223, 334
TaiI	ACGT	1 cut(s)	83
TasI	AATT	1 cut(s)	435
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	2 cut(s)	160, 163
TspDTI	ATGAA	1 cut(s)	346
XmaJI	CCTAGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	326, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.